| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,411,145 | T→G | 10.5% | L450R (CTG→CGG) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,411,145 | 0 | T | G | 10.5% | 416.2 / 3.4 | 202 | L450R (CTG→CGG) | ulaA | L‑ascorbate‑specific enzyme IIC permease component of PTS |
| Reads supporting (aligned to +/- strand): ref base T (65/108); new base G (22/6); total (88/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.04e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 202 total aligned reads displayed.
TCACCGGTATGAGTGCCTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGAAAGTGGACCAGTTTTTAAC > CP009273/4410998‑4411292 | cACCGGTATGAGTGCCTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTgc > 2:3331331/1‑149 (MQ=255) ggTATGAGTGCCTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTgcgcgc > 2:1956480/1‑149 (MQ=255) gTATGAGTGCCTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCa < 1:1049469/149‑1 (MQ=255) gTATGAGTGCCTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCa > 2:206022/1‑149 (MQ=255) tGAGTGCCTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCagaa > 2:3799761/1‑149 (MQ=255) ccTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGAt < 1:3328835/149‑1 (MQ=255) cTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAatatt > 1:1671696/1‑148 (MQ=255) cTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATg < 1:1399725/149‑1 (MQ=255) tGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGc > 2:808595/1‑149 (MQ=255) ggATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCa < 1:380206/149‑1 (MQ=255) gATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAATATGCAg > 2:786718/1‑149 (MQ=255) cATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAaac < 2:2403754/149‑1 (MQ=255) ggCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTAACGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAaacaac < 2:1398864/149‑1 (MQ=255) gACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGc > 2:3675924/1‑149 (MQ=255) tGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGa < 2:1471382/149‑1 (MQ=255) ggTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGaa < 1:3215452/149‑1 (MQ=255) gTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAAc < 1:3916146/149‑1 (MQ=255) cGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAg < 2:2116683/149‑1 (MQ=255) ttCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCt < 1:2136231/149‑1 (MQ=255) ttCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCt < 2:31336/149‑1 (MQ=255) ttCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCt < 2:29719/149‑1 (MQ=255) ttCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCt < 2:1169161/149‑1 (MQ=255) tCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCAGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTg < 2:223790/149‑1 (MQ=255) cTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGc < 2:3903477/149‑1 (MQ=255) ggCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCtt < 1:2597589/149‑1 (MQ=255) ggCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCtt > 2:2096994/1‑149 (MQ=255) cACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTtaa < 1:577923/149‑1 (MQ=255) aCCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTtaat > 2:1545044/1‑149 (MQ=255) aCCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTtaat < 1:2977124/149‑1 (MQ=255) ccgccgATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATTCAGAAAAAAAACTGGCAGAAAAGTCTGGTtaata > 2:2677159/1‑149 (MQ=255) gccgATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACGGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAg < 2:4249338/149‑1 (MQ=255) cgATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCAGCTTAATAAGGa > 2:2090755/1‑149 (MQ=255) cgATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGGCTGCTTAATAAGGa > 2:849284/1‑149 (MQ=255) gatgatGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAg < 1:914829/149‑1 (MQ=255) gatgatGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAg < 2:2887001/149‑1 (MQ=255) atgatgCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGt < 2:3537084/149‑1 (MQ=255) tgatgCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCCGAAGAAGATGCAGAAAAAAAACATGCAGAAAACTCTTCTTAATTAGGAGtt > 1:4189232/1‑149 (MQ=255) tgatgCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGtt < 1:2013957/149‑1 (MQ=255) tgatgCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACAGGCAGAACAGGATGCTTAATAAGGAGtt > 1:530397/1‑149 (MQ=255) tgatgCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCCGAAGAAGATGCAGAAAAAAAAAAGGCAGAACAGACTGGTTAATAAGGAGtt > 1:2912988/1‑149 (MQ=255) atgCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGtttt < 2:4270000/149‑1 (MQ=255) tgCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACCGTCTGCTTAATAAGGAGTTTTg > 2:2306199/1‑149 (MQ=255) cAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGAt < 1:3875819/149‑1 (MQ=255) aaGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGAtt < 1:1877487/149‑1 (MQ=255) aGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTa > 2:3018948/1‑149 (MQ=255) gCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATg < 1:2215916/149‑1 (MQ=255) cttcttCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑a < 1:1641199/149‑1 (MQ=255) cttcttCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑a < 2:1717042/149‑1 (MQ=255) ttcttcTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑Ac < 1:326722/149‑1 (MQ=255) cttctCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACcg > 2:2268894/1‑149 (MQ=255) ttctCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACcgt < 2:2244342/149‑1 (MQ=255) tctcCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACcgta < 1:345279/149‑1 (MQ=255) tctcCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACcgta > 2:2729786/1‑149 (MQ=255) ctcCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCACAAGAAGATGCAGAAAAAAAACAGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATT‑ACcgtac > 1:2290192/1‑149 (MQ=255) ccATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACcgtacgt < 1:1105791/149‑1 (MQ=255) cATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATTCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGCTTATG‑ACcgtacgta > 2:1815609/1‑149 (MQ=255) cGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTc < 1:1030168/149‑1 (MQ=255) cGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTc < 1:3535566/149‑1 (MQ=255) ggTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCAGAAGAAGATTCAGAAAAAAAACATGCAGAAAAGTCTTCTTAATAAGGAGTTTTTATTATT‑ACCGTACGTATTCt > 1:4119586/1‑149 (MQ=255) tATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCCGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑AACGTTCGTATTCTgg > 2:4202291/1‑149 (MQ=255) tATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTgg > 2:3831481/1‑149 (MQ=255) aTCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCACAAGAAGATGCAGAAAAAAAACAGGCCCAACACTCTGCTTAAAAAGGAGTTTTTATTATG‑ACCGGACGGATTCTGGc > 1:2950034/1‑149 (MQ=255) tCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCt < 2:2873691/149‑1 (MQ=255) cGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCACTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGGTTTCTGGCtg < 2:2132340/149‑1 (MQ=255) gcatttATGGCGGTCATCATTTTAATTGGACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCAGATGATTTTGCAGACAAACATCTGGCAGAACAGTCTTCTTAATAAGGAGTTTTTATTATG‑ACCGTACGTATTCTGGCtgt < 1:3164498/146‑1 (MQ=255) gCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCtgt < 1:2792432/149‑1 (MQ=255) ttATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCtgtgtgt < 2:1861639/149‑1 (MQ=255) ttATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCtgtgtgt < 2:182252/149‑1 (MQ=255) ggCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCAGAAGAAGATGCAGAAAAACAACAGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTAAG‑ACCGTACGTATTCTGGCTGTGTGTGGCa > 2:2318361/1‑149 (MQ=255) gCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCaa < 1:512655/149‑1 (MQ=255) gCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCCCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTAAG‑ACCGTACGTAATCTGGCTGTGGGTGGCaa > 1:2462401/1‑149 (MQ=255) gCCGTCAACATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCaa < 1:1913388/149‑1 (MQ=255) cGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTCTTCTGGCTGTGTGTGGCCACg > 2:4119542/1‑149 (MQ=255) cGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACg < 1:168998/149‑1 (MQ=255) atcatTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCCGAAGAAGATTCAGAAAAAAAACAGGCAGAAAAGTCATCTTAATAATGAGGTTTGTTTATT‑AACGGACGTATTATGGCTGTGTGTGGCAACCGACa > 1:1888088/1‑149 (MQ=255) tcatTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACaa < 2:3207484/149‑1 (MQ=255) catTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAAAAACATGCAGAAAAGTCTGCTTAATAATGAGGTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAg > 1:1737232/1‑149 (MQ=255) atTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAAAAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCCTACGTATTCTGGGTGTGTGTGGCAACGGACAAgg > 2:3622029/1‑149 (MQ=255) ttGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCACAAGAAGATTCAGAAAAAAAAAAGGCAGAACACTATTCTTTATAATGAGTTTTTATTATT‑AACGTAAGTATTATGGCTGTGTGTGGCAAAGGACAAAGc > 1:2653114/1‑149 (MQ=255) gTAATTGCACTGGCTTATATGTTCGTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAg < 1:3608868/149‑1 (MQ=255) tAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCCGAATAATATGCAGAAAAACAAATGGCAGAACAGTCTGCTTTATAAGGAGTTTTGATTATG‑ACCGTACGTATTATGGCTGTTTGTGGGAACGGACAAGGCAGt > 2:430768/1‑149 (MQ=255) aTTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTc < 1:441368/149‑1 (MQ=255) ttGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCCCAATAAGATTCAGAAAAAAAACAGGCAGAACAATCAGCGTAATAAGGAGTTTTTATTATGAACCGAAC‑TATTCTGGGTGTGTGTGGCAACGGTCAACGCACTTcc > 2:3256036/1‑149 (MQ=255) tGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCa < 2:1593680/149‑1 (MQ=255) ggCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGAATCAAAAAAAAAAAAGGCAGAACAGTCTGCTTTATAATGAGTTTTGTTTATT‑ACCGGACCTATTCTGGCTGTGTGTGGCAACCGACCACGCAGATCCAAGAtaa > 1:1533527/1‑147 (MQ=255) gCTTATATGTTCTTCGCTGGCCGCGCGCGGCGCGCCGAAGAATATTCAGAAAAAAAAAAGGCAGAAAAGTATTCTTAATAAGGAGTTTTTTTTATT‑ACCGTAAGTATTATTGCTGTTTGTTGCAACCGACAATGCAGTTACAAGAACAt > 1:1955385/1‑149 (MQ=255) tataTGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGaa < 2:673525/149‑1 (MQ=255) tataTGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCAGCTTAATAAGGAGTTTTTATTATG‑ACCGTAAGTATTCTGGCTGTGTGTTGCAACGGACAAGGCAGTTCCATGAtaaataa > 1:3139905/1‑143 (MQ=255) tatGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGa < 1:2464956/149‑1 (MQ=255) atGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATTCAGAAAAACAAAAGGCAGAAAAGTCTGCTTAAAAATGAGTTTTTATTATG‑AACGTAAGTATTATGGCTGTGTGTGGCAAAGGACAAGGCAGTTCCATGATCATGAAGAt > 2:1850037/1‑149 (MQ=255) gTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGa < 2:944150/149‑1 (MQ=255) ttcttcGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGaa < 1:2488052/149‑1 (MQ=255) tcttcGCTGGCCGCGCGCTGCGCGCAGCAGAAGATGCAGAAAAAAAACTGGCAGAAAAGTCTGCTTAATAAGGAGTTTTGATTATT‑AACGTACGTATTATGGCTTTGTGTGGCAAAGGACAAGGCAGTTCCATTATAATTAAGATGaaa > 2:4082886/1‑149 (MQ=255) cttcGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGAAAg < 1:3675924/149‑1 (MQ=255) ttcGCTGGCCGCGCGCGGCGCGCAGAAGAAGATTCAGAAAAACAACAGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATT‑ACCGTACGTATTCTTGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGAAAGt > 2:4203098/1‑149 (MQ=255) tGGCCGCGCGCTGCGCGCAGAAGAAGATTCAGAAAAACAACTTGCAGAACAGTCTGCTTAATAAGGATTTTTTATTATG‑ACCGTAAGGATTATGGCTGTGTGTGGCAAAGGACAAGGCATTTACAAGATCAAGAAGATTAAAATGGAcc > 2:2482925/1‑149 (MQ=255) ggCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTATGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCAAGAAGATGAAAGTGGACCa > 2:2360078/1‑149 (MQ=255) gCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGAAAGTGGACCAg < 2:3357294/149‑1 (MQ=255) gCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGAAAGTGGACCAg < 1:1571244/149‑1 (MQ=255) ccGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGAAAGTGGACCAGt < 2:538130/149‑1 (MQ=255) | TCACCGGTATGAGTGCCTGGATGGGCATGGCGGACTGGTCGATTCTGGCACCGCCGATGATGCAAGGCTTCTTCTCCATCGGTATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGCGCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATG‑ACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGAAAGTGGACCAGTTTTTAAC > CP009273/4410998‑4411292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |