| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,557,158 | T→C | 5.3% | G393G (GGA→GGG) | mdtM ← | multidrug efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,557,158 | 0 | T | C | 5.3% | 587.0 / 3.6 | 185 | G393G (GGA→GGG) | mdtM | multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base T (115/53); new base C (2/8); total (117/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.25e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 186 total aligned reads displayed.
AGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATATTTAGCGATGCGGAGACGG > CP009273/4557011‑4557306 | aGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATc > 2:2719504/1‑149 (MQ=255)aGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATc > 2:561520/1‑149 (MQ=255)aGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATc > 2:3692976/1‑149 (MQ=255)aGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATc > 2:3695718/1‑149 (MQ=255)aGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGAGTGAGCAATc > 2:2209042/1‑149 (MQ=255) tAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATccc < 1:3380760/149‑1 (MQ=255) tAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATccc > 1:2979293/1‑149 (MQ=255) aaGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGc > 1:1135378/1‑149 (MQ=255) agagagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGcc < 2:447784/149‑1 (MQ=255) gagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAgg > 1:1708326/1‑149 (MQ=255) gagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAgg > 1:2693282/1‑149 (MQ=255) gagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAgg > 1:11005/1‑149 (MQ=255) gagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAgg > 1:3007266/1‑149 (MQ=255) gagCACCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAgg > 2:1880486/1‑149 (MQ=255) gcgcCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGt > 2:1060580/1‑149 (MQ=255) gcgcCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAAAGTTAAGAATAGAGCCTGACGGCCGGATAGCGCAAAAATCACTGCTCCTCCACTAGCTCTGCTGCCTGATGATGGCGCACTCGATAGAGCAATCCCGCCAGGGt > 2:25776/1‑149 (MQ=255) aaCCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGCGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGaaaa < 2:1368922/149‑1 (MQ=255) aaCCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGaaaa > 1:2882839/1‑149 (MQ=255) aCCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAac < 2:1256654/149‑1 (MQ=255) ccTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAacg > 1:902376/1‑149 (MQ=255) ttttGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAacgac < 2:1978221/149‑1 (MQ=255) ttttGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAacgac > 1:1315809/1‑149 (MQ=255) ttttGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAacgac < 2:160703/149‑1 (MQ=255) ttttGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAacgac > 1:1170439/1‑149 (MQ=255) tGGCGCGTCTGAGTTCGATGAGTTTATTCATAACTTTAAGAATAGTGCCTGCCGGCGGGATCGCGCAAAAATCAGTGCTCCTCCACTAGCTCGGCTGCCTGTTGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGAt < 2:2452667/149‑1 (MQ=255) gcgcGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATaa > 1:3639317/1‑149 (MQ=255) cgcgTCTTTTTTCTATGTTTTTATTCATAAGTTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCGGCCTTATGCTGGCGCAGGCGATTGTGAAATCCCGCCAGGGTGAAAACGACGATAAc < 2:2772359/149‑1 (MQ=255) tGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAAcgcccgc > 2:764296/1‑149 (MQ=255) gTTCGATTATTTTATTCATACCGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCACCTAGCTCGGCTGCCTTATGCTGGCGCACGCGATTGCGCAATCCCGCCAGGGTGAACACGACGATAACGCCCGCcac < 2:117462/149‑1 (MQ=255) gTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATACCGCCCGCcac > 2:3781620/1‑149 (MQ=255) gTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCcac > 2:1605521/1‑149 (MQ=255) ctttttttttATTAATAACTTAAAGAATAGAGCCTGACGGCCGGATCGCTAAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGGTGGCGCACGCTTTTGAGAAATCCCGCCAGGGTTAAAACGACGATAACGCCCGCCACAAc < 2:1499781/142‑1 (MQ=255) ttttttATTAATAACTTTAAGATTAGCGCCGGACGGCCGTTTCGCGAAAAAATCACTGCTCCTCCACTTGCTCGGGTGCTTTTTGGGGGCGCACGCTTTTGAGCAATCCGGCCTGGTTTAACACGACGATAACGCCCGCCACAACGGCt < 2:3618913/146‑1 (MQ=255) ttgTTTATTCATAAGTTTTAGATTTGAGCCTGCGGGCGGGATCGCGAAAAAATCACTGCGCCTCCAGTCGCGGGGGGGCCTGTGGGTGGCGCACGCTTTTGCGCAATCCCGCCTGGGTGAAAACGACGATAACGCCCGCCACAACGGCt < 2:1442245/147‑1 (MQ=255) gattttATTCATACCGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCt < 2:1037865/146‑1 (MQ=255) tttttATTAATAACTTTAATAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCTTTTGAGCAATCCCGCCTGGGTGAAAACGACGATAACGCCCGCCACAACGGCTa < 2:1666506/147‑1 (MQ=255) gTTTATTAATAACTTTAAGAATAGCGCCTGCCGGCCGTATCGCGAAAAAATCACTGCTCCTCCAATAGCTCGGCTGCCTGATGCTGGCGCACGCTATTGAGAAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTaa < 2:1346186/149‑1 (MQ=255) tATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAg > 1:996280/1‑149 (MQ=255) tATTAATAACTTTAATATTAGCGCCTGACGGCCGGATCGCCAAAAAATCAGTGCTCCCCCACTAGCTCGGCTGCCTTATGCGGGCGCACGCTTTTGACAAATCCCGCCTGGGTTAAAACGACGATAACGCCCGCCACAACGGCTAACAg < 1:3872921/149‑1 (MQ=255) ataaaaaaCTTTAATAATAGAGCCTGACGGCGGGAGCGCCCAAAAATCACTGCTCCTCCACTCGCGCGGCTGCCTGTGGGTGGCGCACGCGTTTGAGCAACCCCGCCTGGTTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGa < 1:3902414/143‑1 (MQ=255) ataaaTAACTTTAAGAATAGAGCGTGAGGGCCGGAGCGCGAAAAAATCACGGCTCCCCCACTAGCTGGGCGGCCTGAGGCGGGCGCACGGGTTTGACCAACCCCGCCTGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGa < 1:3903157/145‑1 (MQ=255) aTTAATAACTTTAAGATTAGCGCGTGCGGGCCGGATCGCGCAAAAATCACTGCTCCGCCACTCGCTGGGCGGCCTGTTGGTGGCGCCGGGGTTTGTGCAATCCCGCCTGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGa < 2:1153870/149‑1 (MQ=255) aTTAATAACTTTAACAATAGAGCCTGACGGCCGTATCGCGAAAAAATCACTGCGCCTCCACTAGCTCGGCGGCCTGTTGCGGGCGCACGCGTTTGACAAACCCCGCCTGGGTCAAAACGACGATAACGCCCGCCACAACGGCTAACAGa < 1:3902437/149‑1 (MQ=255) ttCATAACGTTAATAATAGCGCCTGACGGCCGGATCGCGCAAAAATCACTGCGCCTCCACTAGCTCGGCTGCCTGATGGGGGCGCACGCGTTTGAGCAAGCCCGCCAGGGTGAACACGACGATAACGCCCGCCACAACGGCTAACAGAt < 2:3351748/149‑1 (MQ=255) tcaCGTTAAGAATATAGCCTGACTGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCAGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGaaa > 1:622873/3‑149 (MQ=255) tAACGTTAAGAATAGAGCCTGCCGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTCGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGaaa < 2:3902847/149‑1 (MQ=255) tAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTCACAGATGaaa > 1:797134/1‑149 (MQ=255) actttAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGTGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACg < 2:2509310/146‑1 (MQ=255) aCGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACg > 1:2720597/1‑149 (MQ=255) ttaaaGATTAGCGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTCGCTCGGCTGCCTGTTGCTGGCGCCCGCGATTGAGCAATCCCCCCTGGGTTAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGc < 1:2112402/146‑1 (MQ=255) aaGAATAGAGCCTGACGGCCGGATCGCGCAAAATTAAATGCTCCTCCACTAGCTCGGCTGCCTGTTGCTGGCGCACGCTATTGAGCTTTCCCGCCTGGTTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAg < 2:3176666/149‑1 (MQ=255) aaGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAg > 2:4034682/1‑149 (MQ=255) aaGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAg > 2:510696/1‑149 (MQ=255) aGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGc > 1:2870953/1‑149 (MQ=255) aGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGc > 1:2870966/1‑149 (MQ=255) aTAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGAc > 1:927590/1‑149 (MQ=255) tAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCACGCGAcc > 2:3051190/1‑149 (MQ=255) gagCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGAccgc > 2:1138377/1‑149 (MQ=255) agCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGAccgcc > 1:4156519/1‑149 (MQ=255) ccTGACGGCCGTATCGCCAAAAAATCAGTGCTCCTCAACTAGCTGGGCTGCATTTTGGGGGCGCACGCGTTTTAGAAATCCCGCCTGGGTTAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGt < 2:651011/149‑1 (MQ=255) tGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTa > 2:3555089/1‑149 (MQ=255) tGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTa > 1:3210933/1‑149 (MQ=255) tGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTa > 2:2747409/1‑149 (MQ=255) aCGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTaaa > 1:3913582/1‑149 (MQ=255) gCCGTATCGCGCAAAAATCACTGCCCCTCCACTAGCTCGGCTGCCGGATGCTGGCGCACGCGATTGACAAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCa < 2:2124500/149‑1 (MQ=255) gCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAACCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCa > 1:475653/1‑149 (MQ=255) gCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAACCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCa > 1:475761/1‑149 (MQ=255) ggATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAg > 2:2453315/1‑149 (MQ=255) ggATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAg > 2:3494057/1‑149 (MQ=255) gATCGCGAAAAAATCACGCCTCCGCCACTACCTGGGCTGCCTGTTGTGGGCGCACGCGATTGCCCACTCCCGCCGGGGTTAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGc < 2:1944716/149‑1 (MQ=255) tCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCa > 1:4294545/1‑149 (MQ=255) gcgcAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGc > 1:3532246/1‑149 (MQ=255) aaaaaTCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATCACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGcc > 2:2199509/1‑149 (MQ=255) cACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTc > 1:2616166/1‑149 (MQ=255) cTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCga > 2:1326734/1‑149 (MQ=255) tGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCgac > 1:1379727/1‑149 (MQ=255) gCTCCTCCACTAGCTCGGCTGCCTGATGCGGGCGCACGCTATTGAGCAATCCCGCCAGGGTTAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCgacc < 2:4328931/149‑1 (MQ=255) ctccACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCgaccgaga > 2:4046856/1‑149 (MQ=255) ccACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCgaccgagacc > 1:291821/1‑149 (MQ=255) cTAGCTGGGCTGCCTGTTGGTGGCGCAGGCTATTGAGAAATCCCGCCTGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGAc < 2:3189077/149‑1 (MQ=255) tAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACa > 2:94326/1‑149 (MQ=255) aGCTCGGCTGCCTGATGCTGGCGCACGCGATTGTGCAATCCCGCCAGGGTGAAAACGACGATCACGCCCGCCACCACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTACACCATAGCCAGCGGCCGCTTGCGACCGAGCCCGACAt > 2:3016589/1‑149 (MQ=255) gCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATc > 2:1574338/1‑149 (MQ=255) gCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATc > 1:3182711/1‑149 (MQ=255) gCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATc > 1:3440949/1‑149 (MQ=255) cGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCAcc > 2:426081/1‑149 (MQ=255) gCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCAt > 2:4293917/1‑149 (MQ=255) tGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCa > 2:2043920/1‑149 (MQ=255) ccTGTTGCGGGCGCACGCTTTTGAGAAACCCCGCCTGGGTTAAAACGACGATAACGCCCGCCACAACGGCTAACATATGAACCGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAgg < 1:1791451/149‑1 (MQ=255) tggtGGCGCAGGCTTTTTAGAAATCCCGCCTGGTTCAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCAc < 1:2806266/146‑1 (MQ=255) gCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCAcc > 1:1182251/1‑149 (MQ=255) gggCGCACGATTTTGTGAAAGCCCGCCTGGTTTAAAACGACGATAACGCCCGCCACAACGGCTAACAGATTAAACGGCACGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCat < 1:3160260/148‑1 (MQ=255) ggCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCata > 1:1541451/1‑149 (MQ=255) cgcCCGCGTTGGCGCAATCCCGCCCGGGTGAAAACGCCGATAACGCCCGCCACAACGGCTAACAGATGAACCGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATAtt < 2:1475540/149‑1 (MQ=255) ctaTTGACCAAGCCCGCCAGGGTGAACACGCCGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAGGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATATTTAGCGa < 2:1227818/147‑1 (MQ=255) gATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATATTTAGCGAt > 1:407217/1‑149 (MQ=255) ttGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATATTTAGCGATGc > 2:2921450/1‑149 (MQ=255) aGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATATTTAGCGATGCGga > 2:3671826/1‑149 (MQ=255) aTCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATATTTAGCGATGCGGAGACg > 2:2250902/1‑149 (MQ=255) tCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATATTTAGCGATGCGGAGACgg > 2:3193649/1‑149 (MQ=255) | AGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCACAACGGCTAACAGATGAAACGGCAAGCGACCGCCGTTAAACCATAGCCAGCGGCCGATTTCGACCGAGACCGACATCACCATCAGGATCACCATATTTAGCGATGCGGAGACGG > CP009273/4557011‑4557306 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |