| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 576,183 | G→T | 8.8% | intergenic (‑282/‑107) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 576,183 | 0 | G | T | 8.8% | 489.2 / 7.5 | 161 | intergenic (‑282/‑107) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| Reads supporting (aligned to +/- strand): ref base G (105/35); new base T (2/19); total (107/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.75e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 162 total aligned reads displayed.
CGTTGTGACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTG > CP009273/576034‑576329 | ttGTGACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGta < 2:3466985/150‑1 (MQ=255) tgACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGtattt < 1:3142928/150‑1 (MQ=255) tgACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGtattt < 1:2552080/150‑1 (MQ=255) gACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGtattta < 2:2694155/150‑1 (MQ=255) aCATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGtatttat < 2:2700674/150‑1 (MQ=255) cATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGtatttatt > 2:2198820/1‑150 (MQ=255) cATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGtatttatt > 1:3433607/1‑150 (MQ=255) tGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTAtttattta > 1:2842912/1‑150 (MQ=255) aGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTaaaa > 1:320136/1‑150 (MQ=255) attattATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCt < 1:946295/150‑1 (MQ=255) attattATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCt < 1:3221619/150‑1 (MQ=255) ttatCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGaaa < 1:531553/150‑1 (MQ=255) ttatCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGaaa < 1:3538025/150‑1 (MQ=255) atCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTTAGGTGTTT‑CCGTTCTTCTTCGTGGTAACTTAATGTATTTATTTTATATACCCCCTGaaatg > 2:3837618/1‑148 (MQ=255) cATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATAACCCCTGAaaagaa > 2:846781/1‑150 (MQ=255) aTTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAaaagaaa > 2:2869422/1‑150 (MQ=255) aTTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAaaagaaa > 1:1723318/1‑150 (MQ=255) ttGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGa > 2:3154466/1‑150 (MQ=255) tgtgGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGaa < 2:3116116/150‑1 (MQ=255) gtgGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGaaa < 1:297278/150‑1 (MQ=40) tgGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAAc < 1:325472/150‑1 (MQ=40) tgGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAAc > 1:15670/1‑150 (MQ=40) gggTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACg > 1:673249/1‑150 (MQ=39) gggTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACg < 2:87221/150‑1 (MQ=39) cTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAgg > 1:3932210/1‑150 (MQ=39) cTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAgg > 1:1208197/1‑150 (MQ=39) cTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAgg > 2:1628927/1‑150 (MQ=39) cTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATGTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATTTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAgg > 1:759985/1‑150 (MQ=255) ttCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTg > 1:1982855/1‑150 (MQ=39) cGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTg > 2:3326586/1‑150 (MQ=39) gATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAg > 1:1527171/1‑150 (MQ=38) gATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAg > 1:4446470/1‑150 (MQ=38) aTCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGc > 2:3916894/1‑150 (MQ=38) aTCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TAAAGGTGTTT‑CCGTACTTCTTCGTCGTAACTAAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGCAAACCACAGGTGCTGAAAGc > 2:3916897/1‑150 (MQ=11) tCCGACTGGTTCGGGGGCGGCGACCCGGGGGGTTTTCGCTATTTATTAAAATTTTCCGTT‑TTATGGTGTTT‑CCGTTCTTCTTCGTCGTAAATTATTTTATTTATTAAAAATACCCCCTCAAAACAAAGGAAACGACAGGTGCTGAAAGCg < 2:3363944/150‑1 (MQ=14) cGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAg > 2:4368037/1‑150 (MQ=39) gACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATAACCCCTGAAAAGAAAGGAAAAGACAGGTGCTGAAAGCGAGc > 1:1316187/1‑150 (MQ=255) aCAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCt > 2:2190360/1‑150 (MQ=39) cAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCtt > 1:412814/1‑150 (MQ=39) cAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCtt > 1:419993/1‑150 (MQ=39) cAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCtt > 1:2676689/1‑150 (MQ=39) ggTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCtttt > 2:3719397/1‑150 (MQ=39) gttcgggggCGCCGACCGGGCGGTTTTTCTATATTTTTTAAATTTTTCCGTT‑TTATGGTGTTT‑CCGTTATTCTTCTCCGAAAATTATTTTTTTTATTAAAAATACCCCCTCAAAACAACGCACACGACAGGTGCTGAAAGCGAGCttttt < 2:638037/145‑1 (MQ=255) ttACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGACACGACAGGTGCTGAAAGCGAGCTTTTTg > 2:932320/1‑150 (MQ=255) ttACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTg > 2:3201367/1‑150 (MQ=40) tACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTgg > 1:1713129/1‑150 (MQ=255) tACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTgg > 1:1711888/1‑150 (MQ=255) ccGGGGCGGCGACCGCGGGGTTTTTCGATTTTTATTAATTTTTTCGGGT‑TTAAGGTGTTT‑CCTTTATTCTTCGTCTTAACTTTTTTTATTTATTAAAAATACCCCCTTAAAACAAAGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGc < 2:3969254/149‑1 (MQ=255) aCGGGGCGGCGACCTCGCGGTTTTTCTATATTTATCAAAATTTTCGGTT‑TTATGGTGTTT‑CCTTTCTTCTTCGTCGAAACTTATTTTTTTTATTTAAAATCCCCCCTTAAAACAAAGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGc < 2:573587/150‑1 (MQ=255) aCGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGc > 1:4075956/1‑150 (MQ=255) cGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGcc > 2:1848083/1‑150 (MQ=255) ggggcgCCCTCGGGGTTTTTCGCTATTTATTAAATTTTTCGGTT‑TTATGTTGTTT‑CCGTTCTTCTTCTGCTAAATTTATTTTATTTTTTAAAAACACCCCCTGAAAATAACGGACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTg < 2:937131/148‑1 (MQ=255) gcggcgACCTCGCGGTTTTTCTATATTTATAAAAATTTACC‑TT‑TTAATGTTTTTACCTTTATTCTACTTCTAAAATTATTTTATTTATTAAAAATACCCCCTCAAAACAAACTAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTg < 2:583691/150‑1 (MQ=255) cggcgACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGt > 2:1522508/1‑150 (MQ=255) ggcgACCTCGGGTTTTTTCTTTATTTTTGAAATTTTTCCTTT‑TAAAGGTTTTT‑CCTTTTTTCTTCGTCTTAAATTATTTTATTTATTTAAAATACCCCCTGAAAACAACGCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTc < 2:1188104/150‑1 (MQ=9) cgACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAATGAAACGACAGGTGCTGAAAGCGAGCTTTTTTGCCTCTGTCGt > 1:2667579/1‑150 (MQ=255) gACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGtt > 2:1112868/1‑150 (MQ=255) cTCGGGGGTTTGCGATATTTATGAAATTTTCCCGTT‑TTATGGTGTTT‑CCGTTCTCCTACGTCTTACCTTATTGTATTTATTTAAAAAACCCCCTGAAAAGAACGCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTcc < 2:2827199/150‑1 (MQ=255) ggtttttCGCTATTTATGAAATTGTGCGGGT‑TTATGGTGGTG‑CCGTTCTTCTTCGTCTTAACTTAGTGTATTTATTTAAAATCCCCCCTCAAAAGAACGCCCACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTtct < 2:4285268/147‑1 (MQ=14) gggTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTGTCCTTtct > 1:1706130/1‑150 (MQ=255) tttttCGATTTTTATTAAAATTTTCCGGT‑TTAAGGTGTTT‑CCTTTATTCTTCGTCGTAACTTAATTTATTTATTTAAAATACCCCCTCAAAATAAAGTAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTctct < 2:2884167/149‑1 (MQ=14) ttttCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTATCTg > 2:3653461/1‑150 (MQ=255) cGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTGCGTTCTCTGttgt > 1:2445584/1‑148 (MQ=255) cGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGtttt > 2:3070851/1‑150 (MQ=255) gCTATTTATTAAAATTTTCCTTT‑TTAAGGTGTTT‑CGTTTATTCTTCTTCGTAAATTATTTTATTTATTTAAAATACCCCCTGAAAATAAAGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGttttt < 2:109729/150‑1 (MQ=14) tATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTATCTtttttttt > 1:110261/1‑148 (MQ=255) tATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTATCTGTTTTTGt > 2:1313689/1‑150 (MQ=255) aTTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTGTCCTTTCTCTGTTTTTGTc > 2:1820822/1‑150 (MQ=255) ttATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCg > 2:2176971/1‑150 (MQ=255) tATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGt > 2:4480881/1‑150 (MQ=255) aTGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTg > 2:4528159/1‑150 (MQ=255) ttaaatTTTTCCGGT‑TTCTGGTGTTG‑CCGTTCTTCTTCGTCTTAACTCATTTTATTTATTTAAAATACCCCCTGAAACCAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTgg < 2:3237783/148‑1 (MQ=14) aaTTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTGCTTTGTATGTTTTTGTGGGTGGAAtg > 1:4002325/1‑150 (MQ=14) aTTTTTCGGTGTTATGTTTTTT‑CTTTTTTTTTTCGTGTTAACTTATTTTTTTTAATAAAAAACCCCCATTAAAATAAAGAACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAAtg < 1:2190360/150‑1 (MQ=2) ttttCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTACGTGGAAtgtg > 1:2789176/1‑150 (MQ=255) ttttCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCGTTCTCTGTTTTTGTCCGTGGAAtgtg > 1:2788552/1‑150 (MQ=255) ttCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCa > 2:1439953/1‑150 (MQ=255) tcgggT‑TTAGGTTTTTT‑CCTTTCTATTTCTTGTTAATTTATTTTTTTTATTAAAAAAACCCACTTAAATTAAAGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCaa < 1:2900504/147‑1 (MQ=9) gT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATTTGCAAAGGa > 1:1488989/1‑150 (MQ=255) tAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTACTTTCTCTGTTTTTGTCAGTGGAATGTGCAATGGAAGt > 2:2017699/1‑150 (MQ=255) aaGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTc > 2:672636/1‑150 (MQ=255) ggTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTTTCCGTGGAATGTGCAATGGAAGTcaa > 2:1307346/1‑150 (MQ=255) ggTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaa > 2:3544226/1‑150 (MQ=255) tt‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTGCTTTATCTGTTTTTGTCCGTGGAGTGTGCAATGGTAGTCAACaaaa > 1:2429794/1‑150 (MQ=255) tt‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTACTTTATCTGTTTTTGTGCGTGGGATTTGCAATGGAAGTCAaaaaaa > 1:2429567/1‑150 (MQ=14) cGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTACGTTATCTGTTTTTTTCCGGGGTATGTGGAATGGAAGTAAACAAAAagc > 1:1554998/1‑150 (MQ=14) tttcttcttcGTCTTAACTTATTGTTTTTATTAAAAATACCCCCTCAAAATAACGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagca < 2:1711888/149‑1 (MQ=14) tttcttctgcGTCTTAAATTAATGTATTAATTTAAATTACCCCCTGAAAAGAACGCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagca < 2:1712148/149‑1 (MQ=14) cttcttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTACGTGGAATGTGCAATGGAAGTCAACAAAAagcagcg > 1:2568333/1‑149 (MQ=255) tcttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTGTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgctgg > 1:2087112/1‑150 (MQ=255) tagtcttcgaAACTTATTTTTTTTTTTAAAACAACCCCCTTAAAATAATCAAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgctgg < 1:4423560/144‑1 (MQ=14) ttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgctggct > 2:4445662/1‑150 (MQ=255) gtcgtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTACGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGAc > 2:4206385/1‑150 (MQ=255) gtcgtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCACTGTTTTTGTCCGTGGCATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGAc > 2:4206362/1‑150 (MQ=255) gtcgtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTACTTTCTCTGTTTTTTTCCGTGGAATGTGCAATGGAAGTCAACAAAAATCAGCTGGCTGAc > 1:2119127/1‑150 (MQ=255) cgtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCATTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGaaaa > 1:359773/1‑147 (MQ=255) gtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTATCTGTTTTTGTGCGTGGAATGTGCAATGGGAGTCAACAAAAAGCAGCTGGCTGACAtt > 1:3248060/1‑150 (MQ=255) cTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTGCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGGTGACAttttag > 2:3463381/1‑148 (MQ=255) ttAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCgg > 2:4298916/1‑150 (MQ=255) aaTGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTACTTTATGGTTTTTTGTTCGGGGTATTTGGAAAGGTAGGCAAAAAAAAACACCAGGCGGACAATTTGGGTg > 1:2652116/1‑150 (MQ=9) | CGTTGTGACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGT‑TTAAGGTGTTT‑CCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTG > CP009273/576034‑576329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |