| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 681,488 | G→T | 7.9% | T213N (ACC→AAC) | gltJ ← | glutamate, aspartate ABC transporter permease subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 681,488 | 0 | G | T | 7.9% | 676.5 / 3.7 | 218 | T213N (ACC→AAC) | gltJ | glutamate, aspartate ABC transporter permease subunit |
| Reads supporting (aligned to +/- strand): ref base G (139/47); new base T (2/28); total (141/77) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.45e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 224 total aligned reads displayed.
AGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCA > CP009273/681339‑681637 | aGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCgg < 1:2191312/150‑1 (MQ=255) tGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑Ac < 1:1209416/150‑1 (MQ=255) gCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGa < 1:2615039/150‑1 (MQ=255) cAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGAc < 2:2799515/150‑1 (MQ=255) gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTccc > 1:1522382/1‑150 (MQ=255) agggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAg > 2:751438/1‑150 (MQ=255) aTGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATggg > 2:1937384/1‑150 (MQ=255) ggAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCt > 2:3846500/1‑150 (MQ=255) aCTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAg > 2:2369123/1‑150 (MQ=255) tCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTa > 2:2744814/1‑150 (MQ=255) tCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTa > 2:2183390/1‑150 (MQ=255) ccAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTaa > 1:2290660/1‑150 (MQ=255) cAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAg > 2:608566/1‑150 (MQ=255) aaaCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGc > 2:4504487/1‑150 (MQ=255) aCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCaa > 1:1267281/1‑150 (MQ=255) aCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCaa > 2:157135/1‑150 (MQ=255) cTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAAt > 1:3089170/1‑150 (MQ=255) tCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAAtt > 1:626869/1‑150 (MQ=255) aCATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTAcc > 2:3523355/1‑150 (MQ=255) ttattTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGc > 1:522189/1‑150 (MQ=255) ccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccgc > 1:4120913/1‑150 (MQ=255) ccctGTTGCCTGGCAGGCTAACTTTCGGTTCAACCAGCGACAACACCAGAATTATAACAGCTTTAATAAACACA‑TCCCCCAGCTTATGGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCa < 2:862009/147‑1 (MQ=255) ccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCa > 1:3916906/1‑150 (MQ=255) cttggtGCCAGGCTGGCTAAATTTCCTTAAAACCCGCGAAAACACCATAATTATAAAACATTTAAAAAACACA‑TACGCCAGGTTATGGGCGG‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat < 1:2840683/145‑1 (MQ=255) cATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat > 2:1509453/1‑150 (MQ=255) tgggggCCAGGCTGGCGAACTTTCCGTTCAACCCGCGTCATCACCAGCATGATAACCGCGTTAATCACCACA‑GACCCCAGCGTATGGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCata < 2:2475443/145‑1 (MQ=255) ttGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATcc > 2:4110703/1‑150 (MQ=255) tggcatggcaggtGAAATTTACTTACAACCTCAGTCATCACCTTCATGATAAATGCTTTAATCAA‑ACATTACGCCTGC‑TAATTGTGGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCTCCATATcc < 2:2605004/144‑1 (MQ=255) ccAGGCTTGAGAATTTTTCTTTAAACGAGCGTCTTCACCAGATTGATAAATGTGTTAATAAACACA‑TACGACAGGTTATTGGGGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc < 2:1915890/150‑1 (MQ=255) ccAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc > 2:1447019/1‑150 (MQ=255) ccAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc > 2:268526/1‑150 (MQ=255) ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGa > 1:4508672/1‑150 (MQ=255) ggcGAACTTTACGTTCAACCAGCGAAATCACCAGAATGATAAACGCTTTAATCAACACA‑TACGCCAGCGTATTGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGa < 2:2555773/150‑1 (MQ=255) cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATa > 2:4509556/1‑150 (MQ=255) taaCTTTAGGTACAACCAGCGTCATCACCTGCATTATAAAAGCTTTAATCAAAACA‑TACGCCTGCTTATTGGCGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAg < 1:2973879/149‑1 (MQ=255) aaCTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGt > 2:1868280/1‑150 (MQ=255) cTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCg > 1:3408113/1‑150 (MQ=255) tACTTTCAACCAGCGTAATCACAAGATTTATAAAAGCTTTAATCAACACA‑TCCGCCTGCGTATTGGGGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAgg < 2:1072799/150‑1 (MQ=255) acttacAACCAGCGTCAACACCCGATTTATAAAAGCGTTAATCAACACA‑TACGCCAGCTTATGGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGc < 2:4245103/145‑1 (MQ=255) cGTTAAACCCGCTTCATCACCTGCTTGATAAAAGCTTTAAAAAACACA‑TCCGCCTGGGTATGGGCGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCg < 1:2257801/150‑1 (MQ=255) tttCAACCAGCGTAATCACACGATTTATAAATGCTTTAATCAACACA‑TACGCCTGGTTATTGGGGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGa < 2:1161637/149‑1 (MQ=255) ttCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGAt > 2:2304329/1‑150 (MQ=255) ttCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGAt > 2:3212215/1‑150 (MQ=255) atCAACCACCGTCAACACCAGAATTATAAAAGCTTTAATCACCACA‑TCCCCCTGCTTTTGGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGAt < 1:3177551/149‑1 (MQ=255) tCAACCTGCGTCATCCCCCGCTGGATAAACGCGTTACGCACCACC‑GCCGCCCGGGTATGGGGGG‑TAC‑CCGACTCCCCGGCATGGGCTGAGTACTCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATg < 2:238235/150‑1 (MQ=255) tCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATg > 1:330193/1‑150 (MQ=255) acAACCCGCGACACCACCAGATTGATAAAAGGTTTAAACACCACA‑CCCGCCCGCTTATTGG‑GG‑TAACACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATg < 2:2656066/149‑1 (MQ=255) cAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATgg > 1:960729/1‑150 (MQ=255) aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg > 2:1157517/1‑150 (MQ=255) ccAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCgg > 2:3725994/1‑150 (MQ=255) cAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGa > 2:581768/1‑150 (MQ=255) cAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGa > 2:134113/1‑150 (MQ=255) aGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAg > 1:2554592/1‑150 (MQ=255) aGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAg > 1:2932036/1‑150 (MQ=255) gcctcaccaCCATCATTATAAAAGCTATAAACAAAACA‑TACGCAAGCTTATGGGCGT‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGt < 1:4480614/147‑1 (MQ=255) gTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttt > 2:1546536/1‑150 (MQ=255) catcaCCTGCTTGATAAAAGCGTTAAACAACACC‑TACGCCAGCGTATTGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttttt < 2:2969577/150‑1 (MQ=255) catcaCCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttttt > 2:3418537/1‑150 (MQ=255) caccaccacCATTAAAAACGCGTAAAACACCAAA‑CACGCCAGCTATATGGCGT‑ACC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttttt < 1:842544/147‑1 (MQ=255) ccAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGCCTGAGTAATCGAGCAATTTACCCGCCGGCGCCGCCATATCCACCAGACCGATAGTCGATGCTATGGCGGAGTGTTTCACCa > 2:4423273/1‑150 (MQ=255) aGCATTATAAAAGGTTTAATCAACACA‑TACGCCCGCGTATGGGCGG‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAgg < 2:2087825/150‑1 (MQ=255) aGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAgg > 1:637563/1‑150 (MQ=255) aGCATGATAAAAGCGTTAATACACACA‑TACGCCCGCGTAAGGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAgg < 2:2087858/150‑1 (MQ=255) gctttaTAAAAGGTTTAAACAACACA‑TCCGCCAGGGTATGGGGGG‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGt < 1:679336/145‑1 (MQ=255) cATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGtt > 1:3036673/1‑150 (MQ=255) tttaTAAAAGAGTTAATCAACACA‑TACGCCAGCTTATTGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc < 2:1723330/147‑1 (MQ=255) aTGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 2:3596007/1‑150 (MQ=255) aTGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 2:535435/1‑150 (MQ=255) tGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtca > 1:2007353/1‑150 (MQ=255) tGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtca > 1:1424621/1‑150 (MQ=255) gATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat > 2:3269463/1‑150 (MQ=255) aTAAAAGCGTTAACCACCAAA‑TACGCCCGGTTATTGGCGG‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc < 1:4258042/150‑1 (MQ=255) aaaaGCGTTAATCAACACA‑TACGCCAGCGTATTGGCGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTcatcat < 2:272025/150‑1 (MQ=255) aaaGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCatcatc > 1:324854/1‑150 (MQ=255) gCGTTAATCAACACT‑TCCGCCCGCGT‑TTGGGGG‑TAACACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATctct < 1:3558532/150‑1 (MQ=255) cGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTg > 1:4176735/1‑150 (MQ=255) gTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCTGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa > 2:3722914/1‑150 (MQ=255) tAAACAACACA‑GACGCCAGCTTATTGGCGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAgg < 2:3619460/150‑1 (MQ=255) cAACACA‑TACGCCAGCTTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCAt < 2:2600809/150‑1 (MQ=255) acacA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcg > 2:3105503/1‑150 (MQ=255) caca‑TACGCCCTCGTATGGGCGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg < 2:1603032/150‑1 (MQ=255) cacagccGCCAGCGTAATGGCGG‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg < 2:4045269/144‑1 (MQ=255) aca‑TCCGCCAGCTTATTGGCGG‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc < 2:3413489/150‑1 (MQ=255) aca‑TACGCCAGCGTATTGGCGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc < 1:352516/150‑1 (MQ=255) ca‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcg > 1:2652552/1‑150 (MQ=255) a‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcgg > 2:4208671/1‑150 (MQ=255) tcccccAGCGTATGGGCGT‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCggg < 1:1059467/146‑1 (MQ=255) aCGCCAGCGTAAGGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGa < 2:1847028/150‑1 (MQ=255) cGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAc > 2:4270237/1‑150 (MQ=255) cGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAc > 1:4481694/1‑150 (MQ=255) aGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATa > 2:1520438/1‑150 (MQ=255) gCGTATTGGCGG‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATaa < 2:484343/150‑1 (MQ=255) gCGTAATGGCGG‑TAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATaa < 2:2910227/150‑1 (MQ=255) ttattGGCGG‑AAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcg < 1:2229897/146‑1 (MQ=255) atgggCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg < 2:1032193/147‑1 (MQ=255) aagggCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg < 2:3315353/147‑1 (MQ=255) aaTGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg > 2:3790230/1‑150 (MQ=255) aaTGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg > 1:1923706/1‑150 (MQ=255) g‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCa > 1:2435205/1‑150 (MQ=255) g‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCa > 1:882032/1‑150 (MQ=255) | AGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACA‑TACGCCAGCGTAATGGCGG‑TAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCA > CP009273/681339‑681637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |