| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,414,576 | C→T | 13.7% | intergenic (‑78/‑46) | racR ← / → ydaS | Rac prophage; putative DNA‑binding transcriptional regulator/Rac prophage; putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,414,576 | 0 | C | T | 13.7% | 916.9 / 109.0 | 313 | intergenic (‑78/‑46) | racR/ydaS | Rac prophage; putative DNA‑binding transcriptional regulator/Rac prophage; putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (122/148); new base T (25/18); total (147/166) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 316 total aligned reads displayed.
ACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATG > CP009273/1414428‑1414725 | aCGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCg < 1:331828/150‑1 (MQ=255)aCGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCg < 1:4044032/150‑1 (MQ=255) cGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTCTTGACAATTGCGt > 2:1580793/1‑150 (MQ=255) cGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGt > 2:2478598/1‑150 (MQ=255) ggATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCAGTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGtt < 1:3525747/150‑1 (MQ=255) tCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCAGTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAgg < 1:4025341/150‑1 (MQ=255) aTGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCg > 1:1597235/1‑150 (MQ=255) gCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGcc > 2:3757852/1‑150 (MQ=255) cGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCt > 2:3059/1‑150 (MQ=255) aTTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTaa > 2:632662/1‑150 (MQ=255) tttttttGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAat < 1:903612/150‑1 (MQ=255) tttttttGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAat < 1:1932490/150‑1 (MQ=255) ttttttGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATGACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAata < 2:3697458/150‑1 (MQ=255) tttttGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAatat > 2:504491/1‑150 (MQ=255) tttGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATAttt < 2:4348563/150‑1 (MQ=255) tttGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATAttt < 2:3880220/150‑1 (MQ=255) ttGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTc < 1:1619216/150‑1 (MQ=255) tGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCt < 2:1948628/150‑1 (MQ=255) gCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATGAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGttt < 2:3728872/150‑1 (MQ=255) cTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGttttt < 1:739183/150‑1 (MQ=255) cTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGttttt < 2:282922/150‑1 (MQ=255) tctATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTCTGCGCAGTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAg < 2:4141456/150‑1 (MQ=255) tctATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTCTGCGCAGGACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAg < 2:2905703/150‑1 (MQ=255) tctATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAg > 1:3156569/1‑150 (MQ=255) ctATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGt < 2:2981996/150‑1 (MQ=255) cGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCAt < 1:2566754/150‑1 (MQ=255) cTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTc < 2:1537024/150‑1 (MQ=255) tCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCg < 1:3574351/150‑1 (MQ=255) cGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGa > 1:344199/1‑150 (MQ=255) cGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGa > 2:1442466/1‑150 (MQ=255) ggCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGAt > 1:1648481/1‑150 (MQ=255) gCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATg < 1:1217565/150‑1 (MQ=255) tAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGaaa > 2:313638/1‑150 (MQ=255) tAAGTCTTTACCACTAAGCATTGCTTAATAGTCTCCTCTGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGaaa > 1:964558/1‑150 (MQ=255) aaGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGaaaa < 2:1660028/150‑1 (MQ=255) aaGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGaaaa > 2:1779583/1‑150 (MQ=255) cTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAaga > 1:233596/1‑150 (MQ=255) ttACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAgaga < 1:4212997/150‑1 (MQ=255) tACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGaa > 2:1212062/1‑150 (MQ=255) aCCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAAc < 2:3549714/150‑1 (MQ=255) aCCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAAc < 2:3799102/150‑1 (MQ=255) aCCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAAc < 2:2072211/150‑1 (MQ=255) ccACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACt < 1:221760/150‑1 (MQ=255) cACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTa > 1:4452266/1‑150 (MQ=255) aCTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTat > 1:2173953/1‑150 (MQ=255) cTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTatt < 2:888636/150‑1 (MQ=255) aaGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTattca < 1:1862395/150‑1 (MQ=255) aGCATTGCTTAATATTCTCCTATGCGCATGACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTattcat < 1:4329848/150‑1 (MQ=255) gCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTattcatt > 2:2560207/1‑150 (MQ=255) cATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTattcattc > 2:42430/1‑150 (MQ=255) aTTGCTTAATATTCTCCTATGCGCATGACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTAttcattca < 1:102357/150‑1 (MQ=255) ttGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTcaa > 1:3842930/1‑150 (MQ=255) ttAATATTCTCCTATGTGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTcaagcaa > 2:3975096/1‑150 (MQ=255) tAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTcaagaaag > 2:3489890/1‑150 (MQ=255) aaTATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCaagcaagc > 2:619363/1‑150 (MQ=255) tatTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCtt < 1:1779583/150‑1 (MQ=255) ctcCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGc > 2:1463411/1‑150 (MQ=255) tcCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCt > 2:2149223/1‑150 (MQ=255) tATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCtgtt < 2:4012696/150‑1 (MQ=255) aTGCGCATGACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCtgttg < 1:2145859/150‑1 (MQ=255) tGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCTAGCAAGCTTGTGCtgttgt > 2:293229/1‑150 (MQ=255) tGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCtgttgt < 1:2077873/150‑1 (MQ=255) gcATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCgg < 1:4387124/150‑1 (MQ=255) cattacattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGt > 2:2702049/1‑150 (MQ=255) cattacattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGt > 2:2184045/1‑150 (MQ=255) cattacattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGt > 2:4457855/1‑150 (MQ=255) attacattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTg > 2:2341606/1‑150 (MQ=255) acattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGc > 2:732619/1‑150 (MQ=255) cattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCGTGTGCTGTTGTCGGTGGGCa > 2:3385619/1‑150 (MQ=255) cattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCa < 1:311130/150‑1 (MQ=255) attaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCaa < 1:447757/150‑1 (MQ=255) aGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCa > 1:2013285/1‑150 (MQ=255) aaTCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCaa > 1:1341171/1‑150 (MQ=255) aTCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAAt > 1:439911/1‑150 (MQ=255) aTCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAAt < 2:3272082/150‑1 (MQ=255) tCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATg > 1:3460717/1‑150 (MQ=255) tCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATg > 1:1174490/1‑150 (MQ=255) cTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCt < 1:2488237/150‑1 (MQ=255) cccTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAgg < 1:900234/150‑1 (MQ=255) ccTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGc > 1:4106262/1‑150 (MQ=255) cTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCt < 1:3648284/150‑1 (MQ=255) cTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCt < 1:3878520/150‑1 (MQ=255) tACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCttt < 2:3347469/150‑1 (MQ=255) aCTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCtttt > 1:109405/1‑150 (MQ=255) aCTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCtttt > 2:1803360/1‑150 (MQ=255) tGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAg < 1:642736/150‑1 (MQ=255) tGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAg > 1:1807751/1‑150 (MQ=255) gCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAgg < 2:1844694/150‑1 (MQ=255) cATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgt < 1:632662/150‑1 (MQ=255) cATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgt < 1:2892522/150‑1 (MQ=255) aTTAGGCACAGCCTATTGACAATTGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgtg < 1:1434327/150‑1 (MQ=255) aTTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgtg > 1:1478656/1‑150 (MQ=255) aGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTAt > 2:1252094/1‑150 (MQ=255) cacaGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCAc > 2:1148837/1‑150 (MQ=255) aGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTc > 2:1504522/1‑150 (MQ=255) aGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTc > 2:1347131/1‑150 (MQ=255) cAATTGTGTTAGGCGTCGCCTAATATTTCTGTGAGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTaaa < 1:2720178/150‑1 (MQ=255) cAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTaaa > 2:3065076/1‑150 (MQ=255) aaTTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAAt < 1:1994454/150‑1 (MQ=255) ttGTGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCa < 2:163827/150‑1 (MQ=255) | ACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATG > CP009273/1414428‑1414725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |