| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,997,314 | G→T | 66.3% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,997,314 | 0 | G | T | 66.3% | 218.7 / 269.3 | 228 | intergenic (‑227/‑39) | fliC/fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
| Reads supporting (aligned to +/- strand): ref base G (37/40); new base T (77/74); total (114/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.97e-01 | |||||||||||
Only 100 of 228 total aligned reads displayed.
TCGTCTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAAT > CP009273/1997167‑1997457 | tCGTCTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGt < 1:1108295/150‑1 (MQ=255) cTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTc < 2:3169647/150‑1 (MQ=255) cGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGttt < 2:1009676/150‑1 (MQ=255) gTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGtttt < 1:56224/150‑1 (MQ=255) gTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGtttt > 1:1686729/1‑150 (MQ=255) gTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGtttt > 1:1686878/1‑150 (MQ=255) aaaaCAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTAc < 2:2569918/150‑1 (MQ=255) aaaaCAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTAc > 1:2569763/1‑150 (MQ=255) aaaaCAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTAc < 1:3220147/150‑1 (MQ=255) aaaCAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACg < 1:1410095/150‑1 (MQ=255) aaaCAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACg < 2:1395778/150‑1 (MQ=255) aaaCAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACg > 1:3771029/1‑150 (MQ=255) caacCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACgtgt < 1:3062856/150‑1 (MQ=255) caacCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACgtgt < 1:3258010/150‑1 (MQ=255) caacCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACgtgt < 1:3820946/150‑1 (MQ=255) caacCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACgtgt > 2:440123/1‑150 (MQ=255) aacCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTc < 1:2922645/150‑1 (MQ=255) aacCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTc > 1:2868157/1‑150 (MQ=255) acCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCg > 1:4126973/1‑150 (MQ=255) cTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAAGTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGaa < 2:4198637/150‑1 (MQ=255) tAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGa < 2:2407767/150‑1 (MQ=255) ataaTTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGAt < 2:3407122/148‑1 (MQ=255) aGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGAt < 2:3407063/150‑1 (MQ=255) ttttttCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAg < 2:1991685/150‑1 (MQ=255) ttttCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGa > 2:2803262/1‑150 (MQ=255) ttttCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGa > 2:2247585/1‑150 (MQ=255) tttCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGAGAAAAGGaa > 2:571403/1‑150 (MQ=255) ttCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGaaa > 2:389730/1‑150 (MQ=255) tCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAAt > 1:1790664/1‑150 (MQ=255) tCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAAt < 1:3560568/150‑1 (MQ=255) cAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATc < 1:426078/150‑1 (MQ=255) cAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATc < 1:711612/150‑1 (MQ=255) aCAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATg > 1:2005298/1‑150 (MQ=255) cAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGTTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATgg < 2:912479/150‑1 (MQ=255) aGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGc > 1:2388308/1‑150 (MQ=255) aGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGc > 1:1411208/1‑150 (MQ=255) gCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCa < 1:4074097/150‑1 (MQ=255) cATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAg > 2:1264353/1‑150 (MQ=255) aTTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGt > 2:1314023/1‑150 (MQ=255) ttttttGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTa < 1:847244/150‑1 (MQ=255) ttttGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTAtt > 1:2252680/1‑150 (MQ=255) ttGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTc < 1:4175232/150‑1 (MQ=255) ttGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTc > 2:2366707/1‑150 (MQ=255) tAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCg > 2:1774809/1‑150 (MQ=255) tAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCg > 2:2902616/1‑150 (MQ=255) gTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCt < 2:2360438/150‑1 (MQ=255) gTCGCCGAAATACTCTTTTCTCTGCCCCTAATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCt < 2:2154530/150‑1 (MQ=255) tCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTg > 2:2811169/1‑150 (MQ=255) cGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTgg > 1:3032855/1‑150 (MQ=255) gCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTggg < 2:301523/150‑1 (MQ=255) gCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTggg < 2:1275432/150‑1 (MQ=255) cGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAg > 1:1462352/1‑150 (MQ=255) gAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGt > 2:1410096/1‑150 (MQ=255) aaaTACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTc < 1:900493/150‑1 (MQ=255) aaaTACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTc > 1:4507624/1‑150 (MQ=255) aaaTACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTc > 2:747683/1‑150 (MQ=255) aTACTCTTTTCTCTGCCCCTTAGTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCgg < 2:947339/150‑1 (MQ=255) tACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCggg > 2:1202573/1‑150 (MQ=255) tACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCggg > 2:1202692/1‑150 (MQ=255) ctctTGTCTCTGCCCATTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTc < 2:3238282/150‑1 (MQ=255) ttttCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAgg > 1:634507/1‑150 (MQ=255) tctcTGCCCCTTATTCCCGCTATTAAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTc > 1:2608108/1‑150 (MQ=255) ctctGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTg > 1:488521/1‑150 (MQ=255) ctctGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTg > 1:3295090/1‑150 (MQ=255) ctctGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTg > 1:4161172/1‑150 (MQ=255) tGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGAt < 2:1814538/150‑1 (MQ=255) tGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGAt > 1:509029/1‑150 (MQ=255) cTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAg > 2:2712026/1‑150 (MQ=255) tATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGtt < 1:972603/150‑1 (MQ=255) tATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGtt > 1:2795502/1‑150 (MQ=255) cccGCTATT‑AAAAAAAACAATGAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCAt < 1:1205530/150‑1 (MQ=255) cTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCtt < 1:2463069/150‑1 (MQ=255) cTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCtt < 2:2578575/150‑1 (MQ=255) cTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCtt > 2:3796134/1‑150 (MQ=255) tATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTg > 1:3809181/1‑150 (MQ=255) tATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTg < 1:6084/150‑1 (MQ=255) aTT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGa > 2:4286437/1‑150 (MQ=255) t‑AAAAAAAACAATTACACGTAAACTTTGCGCAAGTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATa < 2:3817755/150‑1 (MQ=255) t‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATa > 2:4353265/1‑150 (MQ=255) aaaaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAg > 1:2064505/1‑150 (MQ=255) aaaaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGAGTTAAGTTCCATCCTTGATAg > 2:3064431/1‑150 (MQ=255) aaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCAc < 2:3524739/150‑1 (MQ=255) aaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCAc > 2:335129/1‑150 (MQ=255) cAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCAccg < 1:745666/150‑1 (MQ=255) aaacttaaacttTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCcgcg < 1:3912465/150‑1 (MQ=255) aaaCGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCcgcg < 1:1635402/150‑1 (MQ=255) tAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCaaaa > 2:4403079/1‑150 (MQ=255) aaCTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAg > 2:540020/1‑150 (MQ=255) cTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCg > 1:1935626/1‑150 (MQ=255) cTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCg < 1:4370844/150‑1 (MQ=255) cTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCg > 1:15829/1‑150 (MQ=255) cAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTaa > 1:2700312/1‑150 (MQ=255) ttCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAAccc > 1:2010158/1‑150 (MQ=255) ttCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAAccc > 1:4020990/1‑150 (MQ=255) tCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAAcccc > 1:1708565/1‑150 (MQ=255) aGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCa > 2:1385069/1‑150 (MQ=255) aCCGATAACCCATTTATTCGTTTTACGTGTCGAAATATAAAAGGAAATCGCTTGGAATTTATTTCATCGGTGGGAGTCGGGTCTGGTATGTTTTTAAGTTCCATCCTTGATTGCCTCACCGCCGCGAAAAAAGCGACGCTAACCCCCAtt < 2:2134784/150‑1 (MQ=255) ccGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCAtat > 1:17138/1‑148 (MQ=255) aTAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCaa > 2:2290095/1‑150 (MQ=255) aaCCCCGGTTTTCGTTTTACGTGTCGAAATATAAAAGGAAATCGCTTGGCAAGTTTTTCATCGCTGGGAGTCGGGTCAGGTCGGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAAt < 2:2905406/150‑1 (MQ=255) | TCGTCTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATT‑AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAAT > CP009273/1997167‑1997457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |