Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,103,588 A→T 11.9% V11E (GTG→GAG)  rfbC ← dTDP‑4‑deoxyrhamnose‑3,5‑epimerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,103,5880AT11.9% 759.9 / 77.1 236V11E (GTG→GAG) rfbCdTDP‑4‑deoxyrhamnose‑3,5‑epimerase
Reads supporting (aligned to +/- strand):  ref base A (85/123);  new base T (13/15);  total (98/138)
Fisher's exact test for biased strand distribution p-value = 6.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01

Only 100 of 239 total aligned reads displayed.

GGCCTCTGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCT  >  CP009273/2103439‑2103736
                                                                                                                                                     |                                                                                                                                                    
   ctctGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACAt                                                                                                                                                   >  1:4300827/1‑150 (MQ=255)
   ctctGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACAt                                                                                                                                                   >  1:1725506/1‑150 (MQ=255)
    tctGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATc                                                                                                                                                  >  1:965049/1‑150 (MQ=255)
     ctGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCt                                                                                                                                                 >  2:4457815/1‑150 (MQ=255)
     ctGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCt                                                                                                                                                 <  2:3088568/150‑1 (MQ=255)
      tGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCtt                                                                                                                                                <  1:1802871/150‑1 (MQ=255)
           aCATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAAtt                                                                                                                                           >  2:3518528/1‑150 (MQ=255)
           aCATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAAtt                                                                                                                                           <  1:4262527/150‑1 (MQ=255)
            cATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAAttt                                                                                                                                          <  2:2004009/150‑1 (MQ=255)
               tttttGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAg                                                                                                                                       <  1:244607/150‑1 (MQ=255)
                ttttGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGt                                                                                                                                      <  1:210822/150‑1 (MQ=255)
                ttttGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGt                                                                                                                                      <  2:2271250/150‑1 (MQ=255)
                  ttGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTc                                                                                                                                    <  2:3162319/150‑1 (MQ=255)
                   tgatgaACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCt                                                                                                                                   <  1:3756656/150‑1 (MQ=255)
                   tgatgaACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCt                                                                                                                                   <  2:3337980/150‑1 (MQ=255)
                    gatgaACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTa                                                                                                                                  <  1:4474901/150‑1 (MQ=255)
                      tgaACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAAt                                                                                                                                >  2:2481107/1‑150 (MQ=255)
                       gaACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATc                                                                                                                               >  2:629535/1‑150 (MQ=255)
                       gaACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATc                                                                                                                               <  2:2198402/150‑1 (MQ=255)
                       gaACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATc                                                                                                                               >  2:2893268/1‑150 (MQ=255)
                        aaCGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATca                                                                                                                              <  2:3495826/150‑1 (MQ=255)
                         aCGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTAACATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATcac                                                                                                                             >  1:4094211/1‑150 (MQ=255)
                          cGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATcaca                                                                                                                            <  1:133009/150‑1 (MQ=255)
                                 gaTTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTa                                                                                                                     <  2:2290391/150‑1 (MQ=255)
                                   ttGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAAt                                                                                                                   <  1:4425002/150‑1 (MQ=255)
                                     gTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAAttt                                                                                                                 >  2:738268/1‑150 (MQ=255)
                                      tCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTg                                                                                                                >  1:192917/1‑150 (MQ=255)
                                         tGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAAt                                                                                                             <  1:1190260/150‑1 (MQ=255)
                                         tGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAAt                                                                                                             >  1:1434574/1‑150 (MQ=255)
                                             cAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCtt                                                                                                         <  2:2643824/150‑1 (MQ=255)
                                             cAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCtt                                                                                                         <  2:4381505/150‑1 (MQ=255)
                                               aaGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCg                                                                                                       <  1:2081521/150‑1 (MQ=255)
                                               aaGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAAGACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCg                                                                                                       <  1:896943/150‑1 (MQ=255)
                                                aGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGt                                                                                                      <  1:1769890/150‑1 (MQ=255)
                                                  cTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCa                                                                                                    <  1:3306076/150‑1 (MQ=255)
                                                  cTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCa                                                                                                    <  1:160190/150‑1 (MQ=255)
                                                     aCCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCAttt                                                                                                 <  1:1769894/150‑1 (MQ=255)
                                                     aCCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCAttt                                                                                                 >  2:2777530/1‑150 (MQ=255)
                                                     aCCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCAttt                                                                                                 <  2:2870879/150‑1 (MQ=255)
                                                       cGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTta                                                                                               <  1:4148176/150‑1 (MQ=255)
                                                       cGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTta                                                                                               >  2:3722487/1‑150 (MQ=255)
                                                        ggATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTtat                                                                                              >  1:2979497/1‑150 (MQ=255)
                                                            aGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAg                                                                                          <  2:3821489/150‑1 (MQ=255)
                                                            aGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAg                                                                                          <  1:3383154/150‑1 (MQ=255)
                                                                 aGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACt                                                                                     <  2:1488452/150‑1 (MQ=255)
                                                                  gAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTg                                                                                    <  2:12424/150‑1 (MQ=255)
                                                                   aaTATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGc                                                                                   >  2:377177/1‑150 (MQ=255)
                                                                    atatGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGcc                                                                                  >  2:761068/1‑150 (MQ=255)
                                                                    atatGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGcc                                                                                  >  1:2330393/1‑150 (MQ=255)
                                                                     tatGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGccc                                                                                 <  2:651217/150‑1 (MQ=255)
                                                                     tatGTTCAAATGCTGATTGATTAAAGCTCACATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGccc                                                                                 <  2:4168279/150‑1 (MQ=255)
                                                                         ttCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATaa                                                                             <  2:1098361/150‑1 (MQ=255)
                                                                           cAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAatt                                                                           >  1:924968/1‑150 (MQ=255)
                                                                           cAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAatt                                                                           >  1:3963050/1‑150 (MQ=255)
                                                                             aaTGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAattat                                                                         >  2:2702535/1‑150 (MQ=255)
                                                                              aTGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAattatt                                                                        <  2:1378184/150‑1 (MQ=255)
                                                                               tGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTc                                                                       <  2:3001471/150‑1 (MQ=255)
                                                                                  tgattgatTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGACCATAATTATTGttt                                                                    >  1:2585126/1‑150 (MQ=255)
                                                                                   gattgattAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTtta                                                                   >  2:477805/1‑150 (MQ=255)
                                                                                       gattAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAg                                                               >  2:1866811/1‑150 (MQ=255)
                                                                                       gattAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAg                                                               >  1:4337735/1‑150 (MQ=255)
                                                                                          tAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTgg                                                            <  2:2058416/150‑1 (MQ=255)
                                                                                           aaaGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCAAATTCATTAATTTGAATCCTTCGTCATATTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGt                                                           >  1:2813150/1‑150 (MQ=255)
                                                                                            aaGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTa                                                          <  2:2146519/150‑1 (MQ=255)
                                                                                             aGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTAc                                                         <  1:637029/150‑1 (MQ=255)
                                                                                             aGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTaa                                                         >  2:872324/1‑149 (MQ=255)
                                                                                             aGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTAc                                                         >  1:302650/1‑150 (MQ=255)
                                                                                             aGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTAc                                                         >  1:302752/1‑150 (MQ=255)
                                                                                               ctctCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAg                                                       <  1:1276565/150‑1 (MQ=255)
                                                                                               ctctCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAg                                                       <  1:2219521/150‑1 (MQ=255)
                                                                                                 ctcATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCt                                                     <  2:2362429/150‑1 (MQ=255)
                                                                                                 ctcATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCt                                                     <  2:1487788/150‑1 (MQ=255)
                                                                                                   cATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTaa                                                   >  1:950480/1‑150 (MQ=255)
                                                                                                    aTAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAAt                                                  >  2:3984774/1‑150 (MQ=255)
                                                                                                       aaaGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAAtttt                                               >  1:2629995/1‑150 (MQ=255)
                                                                                                         aGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCt                                             <  2:1668346/150‑1 (MQ=255)
                                                                                                          gcaaCCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCtt                                            <  1:2512211/148‑1 (MQ=255)
                                                                                                          gAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCtt                                            <  2:1130234/150‑1 (MQ=255)
                                                                                                                tctATCATCACCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGc                                      <  1:3518528/150‑1 (MQ=255)
                                                                                                                  tATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTc                                    >  1:2376023/1‑150 (MQ=255)
                                                                                                                  tATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTc                                    <  1:582691/150‑1 (MQ=255)
                                                                                                                     catcaCCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTCCAGCTAATTTTCTTACTTGCTCAAc                                 >  2:3891320/1‑150 (MQ=255)
                                                                                                                      atcaCCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACa                                >  2:3220908/1‑150 (MQ=255)
                                                                                                                         aCCAAATACTCTTGGCTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCa                             <  1:2005038/150‑1 (MQ=255)
                                                                                                                           cAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAt                           <  1:2481107/150‑1 (MQ=255)
                                                                                                                                aCTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAAc                      <  2:2638120/150‑1 (MQ=255)
                                                                                                                                aCTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAAc                      <  2:2638144/150‑1 (MQ=255)
                                                                                                                                aCTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGATCAACATCAATAAAAc                      >  2:3405859/1‑150 (MQ=255)
                                                                                                                                      ggCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAc                <  1:2777530/150‑1 (MQ=255)
                                                                                                                                      ggCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAc                <  1:248599/150‑1 (MQ=255)
                                                                                                                                        cTCCAGAATTAGCTCATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGa              >  2:4086362/1‑150 (MQ=255)
                                                                                                                                             gAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGc         >  1:761876/1‑150 (MQ=255)
                                                                                                                                              aaTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACACCTAATTTTCTTACTTGCTCAACATCAATAAAAACTTTACGAAATGCa        >  2:3478099/1‑150 (MQ=255)
                                                                                                                                                ttAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAt      <  2:4300827/150‑1 (MQ=255)
                                                                                                                                                ttAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAt      <  2:131035/150‑1 (MQ=255)
                                                                                                                                                  aGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtct    >  2:4517892/1‑150 (MQ=255)
                                                                                                                                                   gCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtctc   <  2:1726029/150‑1 (MQ=255)
                                                                                                                                                   gCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtctc   >  1:1504388/1‑150 (MQ=255)
                                                                                                                                                   gCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtctc   <  1:1072121/150‑1 (MQ=255)
                                                                                                                                                    cacaTCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATctct  >  1:4530140/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GGCCTCTGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCT  >  CP009273/2103439‑2103736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: