| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,708 | G→T | 10.3% | intergenic (‑25/+283) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,708 | 0 | G | T | 10.3% | 470.8 / 8.1 | 177 | intergenic (‑25/+283) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (65/85); new base T (5/22); total (70/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.81e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 179 total aligned reads displayed.
GCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGA > CP009273/2170560‑2170857 | gCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGa < 1:1278515/150‑1 (MQ=255) cAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt < 2:3961739/150‑1 (MQ=255) cAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt < 1:1436427/150‑1 (MQ=255) cAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt < 2:2500260/150‑1 (MQ=255) gTTGGCAGCGGTTTCTACCACCACGTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTc < 2:1716522/150‑1 (MQ=255) tttgCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCa < 2:3626671/147‑1 (MQ=255) ggCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTTAATGCCGGAACCGCATAACCTCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCaaa < 2:263344/150‑1 (MQ=255) ggCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCaaa < 2:2529188/150‑1 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAat‑a > 2:250161/1‑150 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAat‑a < 2:469769/150‑1 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAat‑a < 2:3871314/150‑1 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAat‑a > 2:1803783/1‑150 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTTTGTTTTAGAATTCCAAat‑a > 2:4524056/1‑150 (MQ=255) cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAt‑ata < 1:3319999/150‑1 (MQ=255) cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAt‑ata > 2:14615/1‑150 (MQ=255) ggTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATaa < 2:1437622/150‑1 (MQ=255) ggTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAT‑ATaa > 2:2273501/1‑150 (MQ=255) ggTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAAT‑ATaa > 2:3717154/1‑150 (MQ=255) ggTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAaaaaaaaaa > 1:354402/1‑145 (MQ=255) gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCCTATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAAt < 2:3952104/150‑1 (MQ=255) tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATg < 1:3315080/150‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGaaa < 1:659054/150‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGaaa < 2:2992921/150‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAat < 2:522704/150‑1 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAattatt < 2:658668/150‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttt < 2:822304/150‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttt < 2:152632/150‑1 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGtttt < 1:2265546/150‑1 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGtttt < 1:388610/150‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTATATTTAAAAAT‑ATAATTAAAtttttttttttt > 1:2929647/1‑150 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttttt < 2:3788234/150‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttttt < 2:1897199/150‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGACGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttttt < 2:1898706/150‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTa < 1:1981441/150‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTa < 1:1924206/150‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTa < 1:2630114/150‑1 (MQ=255) cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTTATTTAAAAAA‑AAAAATAAAATATTTTTTTTTAAat > 1:580944/1‑150 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAT‑ATAATGAAATTTTTTGTTTTTAAata < 1:2580298/150‑1 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAT‑ATAATTAAATTATTTTTTTTTTAata > 2:2968933/1‑150 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCg < 2:3278495/150‑1 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTATATTTAAAAAA‑AAAAATAAAATTTTTTTTTTTTAATATAgagag > 1:4360840/1‑149 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAAT‑ATAATGAAATTATTTTTTTTTTAATATCGCGAttaa > 2:4070953/1‑147 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACg < 2:3340727/150‑1 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACg < 1:1254511/150‑1 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGAATTCAAAAT‑ATAATTAAAATATTTGTTTTTAAAAATAGAGATaaaca > 2:867191/1‑147 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 1:248067/150‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATc < 1:4159715/150‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTGTTAAA‑ATAATTTAAAAAATTTTTTTTTAATATGTAGTTAAAGAta > 1:2256479/1‑149 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAT‑ATAAAGAAAATATTTTTTTTTAAATATAGAGAAAAACATca > 2:372659/1‑150 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcaca < 2:3284570/150‑1 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcaca < 2:594734/150‑1 (MQ=255) gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaa < 1:1357595/150‑1 (MQ=255) ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCTTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGAc < 2:2073873/150‑1 (MQ=255) ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGAc < 2:2073883/150‑1 (MQ=255) cGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTGGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACa < 2:1430404/150‑1 (MQ=255) cGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGAATAT‑ATAAATAAATTATTTTTTTTTTAATATAGATATAAAGaaaaaaaaaaaaaaa > 1:494834/1‑145 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACaa < 2:1535003/150‑1 (MQ=255) aCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGCTTTAAAAATAATAAT‑AAATTTTTTTTTTTTAAAAATCGAGATAAAGATCACAAAAACGACAatat > 2:3107621/1‑150 (MQ=255) ccGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCAAAAA‑ATAAATAAATTATTTGTTTTTAAATATAGAGTTAACGATAACAAAAACGACAaaatt > 2:4414685/1‑149 (MQ=255) cATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAT‑ATAATTAAATTATTTTTTTTTAATTATCGAGATAAAGATACCAAAAAAGACAAAATGaaa > 1:300006/1‑150 (MQ=255) cATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTTTTTGATTTAAAAAT‑ATAATTAAATTTTTTGTTTTTTAATATCGGGTTAAAGATGAAAAAAAAGACAATATGtaa > 1:2565289/1‑150 (MQ=255) aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTCGATTTAAAAAT‑ATAAATAAATTATTTTTTTTTTAATATAGAGATAACGATCACAAAAACGACAATATGaaaa > 2:648119/1‑150 (MQ=255) aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAT‑AAAAATAAAATATTTTTTTTTTAATATATAGATAACGATAACAAAAAACACAAAATGtaaa > 2:3422621/1‑150 (MQ=255) cgcTGGGGGTTGTTCAGCATCTGCTTTGCCGATACCCCTAACATTTTCATATCCTGTCTTTTGTTTTCGATTTCAAAAT‑ATAATTAAATTATTTGTTTTAAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgagg < 1:1450883/150‑1 (MQ=255) cTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgaggag < 2:1861334/150‑1 (MQ=255) gtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAT‑ATAATGTAATTATTTTTTTTTTAATATCGAGTTTAAGATCAAAAAAACAAAAAAATAAAAATTATTAGAGGAGtt > 1:1806585/1‑149 (MQ=255) aGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGAAAAA‑ATAAATAAAATATTTTTTTTTTAATATAGAGATAAACAACACAAAAAAGAAAAAATTTAAAAAATTAGTGGAGTGTGAAGGCaaaa > 2:2679043/1‑150 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAA‑AAAATGAAATTAATTGTTTTTAAAAATAGAGATAAACATAACAAAAAAGACAAAATTAAAAATATTAGAGGAGTG‑AAAGGCaaaaaaaa > 2:643728/1‑149 (MQ=255) tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTCGATTTTAAAAT‑ATAATTAAAATATTTGTGTTTAAATATCGAGATAAAGAAAACACAAACACAAAAAATAAAATTATTCGAGGCTTG‑GAAGGCCACAAAAca > 2:4208810/1‑149 (MQ=255) cTGTTTTGTCGATCCCAATTAATTTTTAATATCTTTTCTTTTTTTTTCTATTAAAAAAT‑ATAATTAATTTTTTTTTTTTTAAATATCTATAAAACGAAAAAAAACACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACgg < 1:867863/150‑1 (MQ=255) cTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATAAAAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACgg < 1:1840524/150‑1 (MQ=255) cTGATTTTTCGATACCACTTAAATTTTCATATCCTGTCGTTTGTTTTCTATTACAAAAT‑ATAATGAATTTATTTTTTTTTAATTATCGATATAACGACCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACgg < 2:1559435/150‑1 (MQ=255) tGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTATATATCGAGATAAAGATAACAAAAACGACAATATGAAAATTATTCGCGGAGTG‑AAAGGCCAAAATACGGc > 2:4148979/1‑150 (MQ=255) tGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCAAAAA‑ATAATGAAAATATTTTTTTTTTAATATCGAGATAACCATAACAAAAAACACAAAATTAAAAATATTAGAGGAGGG‑AAAGGCAAAAAAAAGGCCTccc > 2:569307/1‑150 (MQ=255) tGTCGATACAACGTACATTTTAATATCCTGTCGTTTGTTTTCGATTTAAAAAT‑ATAATGAAATTATTTTTTTTTAAATATCGAGATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTccc < 2:3272734/150‑1 (MQ=255) ctaTACCACTTACTTTTTCATATCCTTTCTTTTTTTTTCTATTTAAAAAT‑ATAATTAAATTTTTTTTTTTTAAATTTCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGAt < 2:1353530/148‑1 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAAT‑ATAATTAATTTATTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGAt < 2:1352204/150‑1 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGAt < 2:1352232/150‑1 (MQ=255) aTACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAg < 2:2163261/150‑1 (MQ=255) cACGTAAATTTACATATCCTGTCGTTTGTTTTCGATTTAAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCTAGATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 2:727696/150‑1 (MQ=255) ctttttCAGAGCCTGTCGTTTGTTTTCGATTACAAAAT‑ATAATGAATTTTTTTGTTTTTAAATATCGAGATAACTCTCACAAACACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 2:3082406/148‑1 (MQ=255) atttttCATATCTTGTGTTTTTTTTTCTATTAAAAAAT‑ATAATTAAATTATTTTTTTTTAAATATCTATATAACGATCACAACCACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 1:973928/148‑1 (MQ=255) atttttCATACCATGTGTTTTTTTTTCTATTAAAAAAT‑ATAATTAATTTTTTTTTTTTTAAATTTCGATAAAAAGATAACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 1:3238521/148‑1 (MQ=255) ttaaatatCCGTTCTTTTGTTTTCTATTTAAAAAA‑ATAATTAAATTATTTTTTTTTAAATATCGATATAACTAACACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCa < 2:3820781/146‑1 (MQ=255) tctCCTTTTGTTTTTTTTCTATTACAAAAT‑ATAATTAAATTTTTTTTTTTTAAATATCGATAAACAGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 1:858406/148‑1 (MQ=255) tatCCTGTGTTTTGTTTTCTATTAAAAAAT‑ATATTTAATTTTTTTTTTTTTAATTATCTATATAACTAAAAAAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 1:858526/150‑1 (MQ=255) tcccTGTCGTTTTTTTTCGATTAAAAAAT‑AAAATGAAATTATTTTTTTTTAAATATCTATATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTga < 1:4412155/148‑2 (MQ=255) cgtGTCTTTTGTTTTCTATTTCAAAAT‑ATAATGAATTTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcgc < 2:3882431/148‑1 (MQ=255) gtggtttttttTTGATTTCAAATT‑ATATTTAATTTTTTTGTTTTTAAATATCGTGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg < 1:372659/147‑1 (MQ=255) gtttgtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:1736046/1‑150 (MQ=255) gtttgtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:4018277/1‑150 (MQ=255) tgtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa > 1:3135463/1‑150 (MQ=255) gtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:2409653/1‑150 (MQ=255) gtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:676087/1‑150 (MQ=255) gtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:676077/1‑150 (MQ=255) ttttCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 1:3590242/1‑150 (MQ=255) ttttCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 1:2217388/1‑150 (MQ=255) tttCTATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGc < 2:2003100/150‑1 (MQ=255) tttCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGc > 1:766888/1‑150 (MQ=255) gATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa > 1:764121/1‑150 (MQ=255) | GCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGA > CP009273/2170560‑2170857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |