| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,724 | G→T | 23.7% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,724 | 0 | G | T | 23.7% | 330.7 / 27.5 | 174 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (51/71); new base T (26/22); total (78/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 177 total aligned reads displayed.
TTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAC > CP009273/2170575‑2170873 | tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATg < 1:3315080/150‑1 (MQ=255) ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAT‑ATAATTAAATTAttt > 2:3385771/1‑150 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttt < 2:822304/150‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttt < 1:181709/150‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttt < 1:2445665/150‑1 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGtttt < 1:388610/150‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTTAAAAAT‑AAAAATAAAATAAtttttttt > 1:3812385/1‑150 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttttt < 2:3788234/150‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttttt < 2:1897204/150‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGttttt < 2:1897199/150‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTa < 1:2630114/150‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTa < 1:1924147/150‑1 (MQ=255) cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTATGTTTAAAAAT‑ATAATGAAATTATTTTTTTTTaata > 1:580994/1‑148 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAata < 2:70245/150‑1 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAata < 1:3621866/150‑1 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAT‑ATAATGAAATTTTTTGTTTTTAAata < 1:2580298/150‑1 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAT‑ATAATTAAATTATTTTTTTTTTAata > 2:2968933/1‑150 (MQ=255) ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATc < 2:55250/150‑1 (MQ=255) cGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAT‑ATAAAGAAAATATTTTTTTTTAAataaaga > 2:2205477/1‑146 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTATATTTAAAAAA‑AAAAATAAAATTTTTTTTTTTTAATATAgagag > 1:4360840/1‑149 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAAT‑ATAATGAAATTATTTTTTTTTTAATATCGCGAttaa > 2:4070953/1‑147 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACg < 1:1254511/150‑1 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGAATTCAAAAT‑ATAATTAAAATATTTGTTTTTAAAAATAGAGATaaaca > 2:867191/1‑147 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 1:248196/150‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATc < 1:4159715/150‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTGAAAAT‑ATTATTATATTATTTTTTTTTTTATATAGAGTTAActtta > 1:2256525/1‑146 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGGTTTCGCTGTCAAAAA‑ATAAAGAAAATATTTTTTTTTAAAAATAGAGATAACCATc > 2:3273379/1‑150 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATca < 2:3287789/150‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAT‑ATAAAGAAAATATTTTTTTTTAAATATAGAGAAAAACATca > 2:372659/1‑150 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcaca < 2:3284570/150‑1 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcaca < 2:594734/150‑1 (MQ=255) gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaa < 1:1357595/150‑1 (MQ=255) aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAAA‑ATAATGAAAATATTTTTTTTTTAATATAGAGTTAAAGATAACaaaaa > 2:593552/1‑150 (MQ=255) ccGGAACCGCATAACCGCCGCGCTGTGCTTTGTTCAGCATCTGCTTTGACGATACCACGTACATTTTAATATCCTGTCGTTTGTTTTCTATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGAc < 2:3861171/150‑1 (MQ=255) ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGAc < 2:2073883/150‑1 (MQ=255) cGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTGGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACa < 2:1430404/150‑1 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACaa < 2:1535003/150‑1 (MQ=255) aCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGCTTTAAAAATAATAAT‑AAATTTTTTTTTTTTAAAAATCGAGATAAAGATCACAAAAACGACAatat > 2:3107621/1‑150 (MQ=255) aCCGAATAACCGCCGCGCTGTGCGTTGTACAGCATCTGATTTGTCGAAACAATGTAATTTTACATATCCTTTCGTTTTTTTTCTTTTTAAAAAT‑ATAATTAAATTTTTTTTTTTTAATTATCGAGATAACGAAAACAAAAACGACAatat < 2:3016237/150‑1 (MQ=255) ccGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCAAAAA‑ATAAATAAATTATTTGTTTTTAAATATAGAGTTAACGATAACAAAAACGACAaaatt > 2:4414685/1‑149 (MQ=255) aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTCGATTTAAAAAT‑ATAAATAAATTATTTTTTTTTTAATATAGAGATAACGATCACAAAAACGACAATATGaaaa > 2:648119/1‑150 (MQ=255) tAACCGCGGGGGTGGGCGTTGTTCAGCATCTGCTTTGTCGATACAACTTACTTTTTAATATCGTGTGGTTTGTTTTCGATTTCAAAAT‑ATATTTAATTTTTTTTTTTTTAAATATCGTTATAACGATCACAAAAACGACAATATGAAAat < 1:718585/150‑1 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGAATTCAAAAT‑ATAATTAAATTATTTTTTTTTTAATATCGAGATAACCATCAAAAAAACGACAAAATGAAAatt > 2:2583147/1‑150 (MQ=255) cgccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTTAATATAGAGATAACGATAACAAAAAAGACAAAAAGAAAaatatt > 2:2130306/1‑150 (MQ=255) gcgcTGTGTGTTGTTCAGCTTTTGTTTTGTCGAGACCACGTACTTTTTAATATCCTTTCTTTTGTTTTCTATTAAAAAAT‑ATAATCAAATTTTTTTTTTTTAAATATCGAGATAACTATCACAAACACGACAATATGAAAATTATTCgag < 1:2916070/150‑1 (MQ=255) cgcTGGGGGTTGTTCAGCATCTGCTTTGCCGATACCCCTAACATTTTCATATCCTGTCTTTTGTTTTCGATTTCAAAAT‑ATAATTAAATTATTTGTTTTAAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgagg < 1:1450883/150‑1 (MQ=255) cTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgaggag < 2:1861334/150‑1 (MQ=255) tgtgCGTTGTTCAGAATCTGCTTTGTCGATCCCACGTAATTTTTCATATCGTGTCGTTTGTTTTCTATTACAAAAT‑ATATTGTAATTATTTTTTTTTAAATATCGAGATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGt < 2:4178842/150‑1 (MQ=255) tgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGAATTAAAAAA‑AAAATTAAAATAATTTTTTTTTAAAAAAGAGATAAACATAACAAAAAAAACAAAAAGAAAAAAATTAGAGGCGtta > 2:3808012/1‑148 (MQ=255) tgtaCAGCATCTGCTTGGTCGATACCACGTAAATTTTCATATCCTGTCTTTTTTTTGCGATTTCAAAAT‑ATATTTAATTTTTTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGc < 2:1916923/150‑1 (MQ=255) gttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAT‑ATAAATAAATTATTTTTTTTTAAATATAGAGATAAAGATAACAAAAAACACAAAATTAAAATTATTAGAGGAGTG‑AAATGCa > 2:206028/1‑150 (MQ=255) aGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGAAAAA‑ATAAATAAAATATTTTTTTTTTAATATAGAGATAAACAACACAAAAAAGAAAAAATTTAAAAAATTAGTGGAGTGTGAAGGCaaaa > 2:2679043/1‑150 (MQ=255) aGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTGAAAAT‑ATAATGAAAATATTTGTTTTTTAATATCGAGATTAAGATAACAAAAACCACAAAATGTAAATTATTCGTGGGGTG‑GAAGGCacaaa > 2:3940629/1‑150 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAA‑AAAATGAAATTAATTGTTTTTAAAAATAGAGATAAACATAACAAAAAAGACAAAATTAAAAATATTAGAGGAGTG‑AAAGGCaaaaaaaa > 2:643728/1‑149 (MQ=255) tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTCGATTTTAAAAT‑ATAATTAAAATATTTGTGTTTAAATATCGAGATAAAGAAAACACAAACACAAAAAATAAAATTATTCGAGGCTTG‑GAAGGCCACAAAAca > 2:4208810/1‑149 (MQ=255) cTGTTTTGTCGATCCCAATTAATTTTTAATATCTTTTCTTTTTTTTTCTATTAAAAAAT‑ATAATTAATTTTTTTTTTTTTAAATATCTATAAAACGAAAAAAAACACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACgg < 1:867863/150‑1 (MQ=255) cTGATTTTTCGATACCACTTAAATTTTCATATCCTGTCGTTTGTTTTCTATTACAAAAT‑ATAATGAATTTATTTTTTTTTAATTATCGATATAACGACCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACgg < 2:1559435/150‑1 (MQ=255) ctaTACCACTTACTTTTTCATATCCTTTCTTTTTTTTTCTATTTAAAAAT‑ATAATTAAATTTTTTTTTTTTAAATTTCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGAt < 2:1353530/148‑1 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAAT‑ATAATTAATTTATTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGAt < 2:1352204/150‑1 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGAt < 2:1352232/150‑1 (MQ=255) aTACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGATTTCAAAAT‑ATAAATAAAATATTTTTTTTTTTAAATAGAGATAAAGAGAACAAAAAACACCAAATGTAAATTAATAGAGGGGTG‑AAAGGCAAAAAAAAAGCCAcccccgag > 2:455974/1‑145 (MQ=255) aaCCACTTAAATTTTAATATCCTGTCTTTTTTTTTCTATTTAAAAAT‑ATATTGAAATTATTTTTTTTTAAATATCTATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAgg < 1:3023716/149‑1 (MQ=255) acaaCGTAAATTTTCATATCCTGTCGTTTTTTTTGTATTTCAAAAT‑ATAATTAATTTATTTTTTTTTAAATATCTTTATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAggg < 1:2961047/147‑1 (MQ=255) cACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 2:1611546/150‑1 (MQ=255) cACGTAAATTTACATATCCTGTCGTTTGTTTTCGATTTAAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCTAGATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 2:727696/150‑1 (MQ=255) atttttCATATCTTGTGTTTTTTTTTCTATTAAAAAAT‑ATAATTAAATTATTTTTTTTTAAATATCTATATAACGATCACAACCACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 1:973928/148‑1 (MQ=255) atttttCATACCATGTGTTTTTTTTTCTATTAAAAAAT‑ATAATTAATTTTTTTTTTTTTAAATTTCGATAAAAAGATAACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 1:3238521/148‑1 (MQ=255) tCATATCCTGTCGTGTGTTTTGGATTTAAAAAA‑AAAAATAAAATATTTTTTTTTTAATAAAGACAAAAAGAACACAAAAAAGACAAAAATAAAATTATTAGAGGAGTG‑AAAGGCAAAAAAAAAGCCACCCCAAAAGGAAGCCCGAGCaaa > 2:152040/1‑150 (MQ=255) tctCCTTTTGTTTTTTTTCTATTACAAAAT‑ATAATTAAATTTTTTTTTTTTAAATATCGATAAACAGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 1:858406/148‑1 (MQ=255) tatCCTGTGTTTTGTTTTCTATTAAAAAAT‑ATATTTAATTTTTTTTTTTTTAATTATCTATATAACTAAAAAAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 1:858526/150‑1 (MQ=255) gtggtttttttTTGATTTCAAATT‑ATATTTAATTTTTTTGTTTTTAAATATCGTGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg < 1:372659/147‑1 (MQ=255) gTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg > 2:3221570/1‑150 (MQ=255) cGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 2:3087557/1‑150 (MQ=255) gtttgtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:4018277/1‑150 (MQ=255) gtttgtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:1736046/1‑150 (MQ=255) tgtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa > 1:195279/1‑150 (MQ=255) tgtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa > 1:3135463/1‑150 (MQ=255) gtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:676068/1‑150 (MQ=255) gtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:676087/1‑150 (MQ=255) gtttTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:2409653/1‑150 (MQ=255) ttttCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAATCGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 1:4444992/1‑150 (MQ=255) ttttCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 1:3590242/1‑150 (MQ=255) ttttCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 1:2217388/1‑150 (MQ=255) tttCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGc > 1:766852/1‑150 (MQ=255) cGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 1:506279/1‑150 (MQ=255) taTTTAAAAAT‑ATAATGAAATTTTTTTTTTTTAAATATCTAGATAACGAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa < 1:1994752/149‑1 (MQ=255) aTTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 1:4445950/1‑150 (MQ=255) aTTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 1:3449752/1‑150 (MQ=255) aTTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTGTTTATGCCGGAt > 2:2359108/1‑150 (MQ=255) cAAAAT‑ATAATTAAATTATTTTTTTTTAATTATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg < 2:3915226/150‑1 (MQ=255) cAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATACCGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 1:3662138/1‑150 (MQ=255) aaT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtgt > 2:271282/1‑150 (MQ=255) aaT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtgt > 1:1835249/1‑150 (MQ=255) aaT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtgt > 2:3884543/1‑150 (MQ=255) at‑atACTGAATTTATTTGTTTTTAAATATCGAGATCCCGATCACAACCACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa < 1:2412494/150‑1 (MQ=255) aTGAAATTATTTTTTTTTAAATATCTAGATAACTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt < 1:250223/150‑1 (MQ=255) aTGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt > 1:2060646/1‑150 (MQ=255) aTGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt > 2:784351/1‑150 (MQ=255) tGAATTTATTTTTTTTTAAATATAGATAAAACTAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATa < 1:1177777/150‑1 (MQ=255) gAAATTATTTTTTTTTAAATATCGAGATAACTATCACAAACACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAc < 2:3474078/150‑1 (MQ=255) | TTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑ATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAC > CP009273/2170575‑2170873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |