| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,380,174 | C→A | 6.2% | S458S (TCG→TCT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,380,174 | 0 | C | A | 6.2% | 922.3 / 25.0 | 241 | S458S (TCG→TCT) | aaeB | p‑hydroxybenzoic acid efflux system component |
| Reads supporting (aligned to +/- strand): ref base C (114/112); new base A (8/7); total (122/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 243 total aligned reads displayed.
GATTTATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTCCCGTA > CP009273/3380028‑3380323 | gATTTATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAg > 2:2979992/1‑150 (MQ=255) tttATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGcc < 1:839640/150‑1 (MQ=255) tATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCa < 2:2641863/150‑1 (MQ=255) tCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGt < 1:1988843/150‑1 (MQ=255) cccGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTc < 1:44528/150‑1 (MQ=255) cGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGc > 2:649509/1‑150 (MQ=255) cACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCg > 1:3668704/1‑150 (MQ=255) cACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCg < 1:2135801/150‑1 (MQ=255) ccAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGtt > 2:3110400/1‑150 (MQ=255) ccAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGtt > 1:3927800/1‑150 (MQ=255) ccAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGtt > 2:845569/1‑150 (MQ=255) ccAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGtt > 2:589589/1‑150 (MQ=255) cAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTg < 1:515885/150‑1 (MQ=255) aaaaTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGt > 2:2127424/1‑150 (MQ=255) aaaaTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGt > 1:3235380/1‑150 (MQ=255) aaaTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTa > 1:1921955/1‑150 (MQ=255) aaTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTAc > 2:3286534/1‑150 (MQ=255) aTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACt < 2:3551880/150‑1 (MQ=255) tAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACtt < 1:1081227/150‑1 (MQ=255) aCGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCt > 1:3883998/1‑150 (MQ=255) cGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCta < 1:2479435/150‑1 (MQ=255) cGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCta < 2:1031746/150‑1 (MQ=255) gTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCtcta > 2:488665/1‑150 (MQ=255) aaCGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCg < 2:1363145/150‑1 (MQ=255) cgcgAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAg < 1:3708792/150‑1 (MQ=255) cgAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGga > 1:2581434/1‑150 (MQ=255) acaGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATcc > 1:1832562/1‑150 (MQ=255) acaGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATcc > 2:4298880/1‑150 (MQ=255) aGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCa < 1:1801759/150‑1 (MQ=255) gCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAg > 1:2659397/1‑150 (MQ=255) ccGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGc < 1:3494252/150‑1 (MQ=255) gaTTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGc > 2:2673090/1‑150 (MQ=255) aTTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGcc > 1:750977/1‑150 (MQ=255) tttGCCCTAATGAGCTGTCGAGAAACTGACTGAAATTGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCa < 1:3095458/150‑1 (MQ=255) ttGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAg < 1:2918025/150‑1 (MQ=255) gcgcTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGcac < 1:1808002/150‑1 (MQ=255) cgcTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGcaca > 2:2280886/1‑150 (MQ=255) tGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTCATGCAcagca > 1:1634863/1‑150 (MQ=255) gagaAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCaa > 2:2778072/1‑150 (MQ=255) gagaAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCaa < 2:2026632/150‑1 (MQ=255) agaAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAAc < 1:640619/150‑1 (MQ=255) agaAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAAc < 1:641415/150‑1 (MQ=255) aaaCTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACAt < 1:2542119/150‑1 (MQ=255) aaaCTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACAt < 2:904257/150‑1 (MQ=255) aaaCTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACAt < 2:1842784/150‑1 (MQ=255) actgactgAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGc > 1:4364928/1‑150 (MQ=255) ctgactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGct > 1:1016964/1‑150 (MQ=255) ctgactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGct < 2:4026349/150‑1 (MQ=255) tgactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGctc > 2:3033629/1‑150 (MQ=255) gactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTCATGCACAGCAGCAACATGctct > 2:17389/1‑150 (MQ=255) gactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGctct > 2:530387/1‑150 (MQ=255) ctgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGt < 1:437354/150‑1 (MQ=255) ctgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGt < 2:1084848/150‑1 (MQ=255) aaaTGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATACCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTgg > 2:886157/1‑150 (MQ=255) aaTGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTggg < 1:104655/150‑1 (MQ=255) agggAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGt < 2:3981604/148‑1 (MQ=255) ggAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTAt < 2:4145994/150‑1 (MQ=255) aaaGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTa > 2:3728137/1‑150 (MQ=255) aaaGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGACGCCGTTTCAGTAATTCAATACCGAGGAACAATCCCATCACAGCCAGGCTAATGCACAGCAGCAACAAGCTCTGTTGGGTATTa > 1:896255/1‑150 (MQ=255) aaGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAg < 1:1338339/150‑1 (MQ=255) gTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTTGGTATTAggg > 2:3097290/1‑150 (MQ=255) gTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAggg > 2:4213913/1‑150 (MQ=255) gTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATACCAGCACAGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAggg > 1:451614/1‑150 (MQ=255) tCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGa < 2:1921955/150‑1 (MQ=255) cATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCCGCAACATGCTCAGTTGGGTATTAGGGAt > 1:4201838/1‑150 (MQ=255) cATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGAt < 1:1520364/150‑1 (MQ=255) cGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAAt < 1:1805824/150‑1 (MQ=255) gggTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATc < 1:4470542/150‑1 (MQ=255) ggTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCa > 2:933139/1‑150 (MQ=255) gTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCAc < 2:286133/150‑1 (MQ=255) tATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCCGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCa > 2:3477314/1‑150 (MQ=255) aTCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaa > 2:2891264/1‑150 (MQ=255) cAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaaaaa > 1:2098117/1‑150 (MQ=255) cAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaaaaa > 1:4372816/1‑150 (MQ=255) cAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaaaaa > 1:2232504/1‑150 (MQ=255) cAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaaaaa > 2:3381047/1‑150 (MQ=255) aCGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTag < 1:4320824/150‑1 (MQ=255) cGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTaga < 1:2798066/150‑1 (MQ=255) gATAATATTTATGGTGCTGGCCAGTG‑CACCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTTGGTATTAGGGATAATCACCAAAAAGTagag < 1:3336683/150‑1 (MQ=255) taataTTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGagca < 2:3235380/150‑1 (MQ=255) aataTTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGagcag < 2:3927800/150‑1 (MQ=255) aataTTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGagcag < 2:2448106/150‑1 (MQ=255) atatGTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGagcagc < 2:2016600/150‑1 (MQ=255) tatTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGcc > 1:898606/1‑150 (MQ=255) tatTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTATATACCGAGGAAGAATCCCACCACTGCCAGGCGAATGCACAGCAGCAACATGCTCTGTTGGGTCTTATGGATAATCACCAAAAAGTAGAGCAGcc > 1:1235299/1‑150 (MQ=255) tttATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCt < 2:2741781/150‑1 (MQ=255) tGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACg > 2:255324/1‑150 (MQ=255) ggTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACgg < 2:4524749/150‑1 (MQ=255) gTGCTGGCCAGTGCCCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCAATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACgg > 1:3776160/1‑150 (MQ=255) gTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTTTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGc > 2:240799/1‑150 (MQ=255) gTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGc < 2:2310623/150‑1 (MQ=255) gCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAg < 2:4104164/150‑1 (MQ=255) ggCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCCGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAgcgc > 2:3173540/1‑150 (MQ=255) ggCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGTTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAgcgc < 2:114528/150‑1 (MQ=255) gCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGcgcg > 2:1976640/1‑150 (MQ=255) cAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGc > 1:1682797/1‑150 (MQ=255) cAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATAACGAGGAAGAATCCCAGCACTGCCAGGCTAAAGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATAACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGc > 1:617691/1‑150 (MQ=255) ccATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTcc < 1:3221294/150‑1 (MQ=255) aTCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTCCCg > 2:2640670/1‑150 (MQ=255) cGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTCCCGTa > 2:1547387/1‑150 (MQ=255) | GATTTATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTCCCGTA > CP009273/3380028‑3380323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |