| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,479 | C→G | 9.7% | intergenic (‑92/+338) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,479 | 0 | C | G | 9.7% | 686.9 / 14.7 | 236 | intergenic (‑92/+338) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base C (124/78); new base G (4/21); total (136/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.96e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 239 total aligned reads displayed.
CCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGG > CP009273/3385330‑3385628 | ccTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTcc > 1:1262357/1‑150 (MQ=255) aTGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTCCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCACCCTACGGTTATGTTCCGG‑tt > 2:4408994/1‑150 (MQ=255) tGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑ttt > 1:4157806/1‑150 (MQ=255) tGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑ttt > 2:725192/1‑150 (MQ=255) aGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGACCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGc > 2:2894195/1‑150 (MQ=255) cGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCTGG‑CTCGTTGGCCttt < 1:3717700/150‑3 (MQ=255) gTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGAt > 1:1720359/1‑150 (MQ=255) ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATa < 1:1041004/150‑1 (MQ=255) ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATa < 1:2926548/150‑1 (MQ=255) tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATaa > 1:110650/1‑150 (MQ=255) tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑GTTGTAGGCCTGATaa > 1:925545/1‑150 (MQ=255) ccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGAc < 1:2395307/150‑1 (MQ=255) cTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAAAGCCATATACATCATACGGTAATGTTCCGG‑TTTTAAGGCATGAAAAGACGca > 1:1025912/1‑150 (MQ=255) tAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGG‑TTTGTAGGCCTGATAAGACGcac > 2:3208889/1‑150 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGcaca < 1:51130/150‑1 (MQ=255) aaTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCg < 1:4149010/150‑1 (MQ=255) aaTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGGTACTGCAGTAGAGGATTTTTGACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCg < 2:3133854/150‑1 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCg < 1:1887675/150‑1 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCg < 1:1483530/150‑1 (MQ=255) tCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 2:2250819/1‑150 (MQ=255) tCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCAt < 1:300480/150‑1 (MQ=255) cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATc > 1:3567521/1‑150 (MQ=255) aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa < 1:210681/150‑1 (MQ=255) tACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc > 2:438183/1‑150 (MQ=255) ccAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGACCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCGGATAAGACGCACAGCTTCGCATCAGGCaa > 1:1310929/1‑150 (MQ=255) cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc < 1:1625724/150‑1 (MQ=255) aGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg > 1:1957504/1‑150 (MQ=255) tttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc < 2:7805/149‑1 (MQ=255) ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGT‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCt < 2:2019541/150‑1 (MQ=255) tAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 1:792866/1‑150 (MQ=255) tAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 1:3287302/1‑150 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTc > 1:3905269/1‑150 (MQ=255) ttttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTCCGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:2297662/1‑150 (MQ=255) gCTACTGGTTTGTTACTGCTGTAGAGTATTTTTTAGGGCGGCCGGTTGCGGCGTGAACGCCCTATCCAGCCTAGGGTTATGTGCGGG‑TTTGTTGGCCTGATAAGACGCACAGCGGCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAAc < 2:2779043/150‑1 (MQ=18) cTACTCGTTCGTTACTGCTTTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTCAACGCCCTCACCAGCCTACGGTTATGTACCGT‑TTTTTAGGCCTGATAACACGCACAGCTTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACg < 2:2449151/150‑1 (MQ=37) tctttagttaCTGCTGTAGAGTATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCATATCCAGCCTACGTTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCtt < 2:2842750/147‑1 (MQ=18) tcgttcgtTACGGCAGTAGAGTATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTCGGTTTATGTTCCGG‑TTTGTCGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCtt < 2:1854375/150‑1 (MQ=18) cGTTATTTACTGCTGTAGTGGATTTTTTCCGGCTGCGGGATGCGGCGTGAACGCCATATCCAGCCTACGGTTATGTTCGGG‑TTTGTCGGCCTGATAAGACGCACCGCGTCGCATAAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTa < 2:149046/150‑1 (MQ=18) cGTTAGTTACTGCAGTAGAGGATTTTTTCCGGCTGCCGGAGGCGGCGTGACCGCCCTATCCCGCCTACGGTTATGTTCCGG‑TTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTa < 2:699092/150‑1 (MQ=21) cGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTa < 2:698972/150‑1 (MQ=255) cGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTa > 1:2372031/1‑150 (MQ=255) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGTCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt > 1:3905879/1‑150 (MQ=255) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGTCGTAAACGCCTTAt > 2:388235/1‑150 (MQ=255) ttatttaCTGCTTTATTGTATTTTTTACGGATGACGTATGCGGCTTTAACGCCCTATCCAGCCTAGTGTTTTTTTCGGG‑TTTGTTGGCCTGATTCGAGGAACGGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAATCGCCTTAtg < 2:3889523/150‑2 (MQ=16) tagttaCTGCTGTAGAGGTTTTTTTACGGATGCCGGTTGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATcc < 2:1068692/150‑1 (MQ=255) tagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATGCGGCGTAAACGCCTTATcc > 2:3016372/1‑150 (MQ=255) agttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCg > 1:870185/1‑150 (MQ=255) agttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCg > 1:870372/1‑150 (MQ=255) aCTGCTGTAGTGTATTTTTGCCGGCGGCCGGAGGGGGCGGGACCGCCCTAGCCCGCCTCGGGTTTGGTTCCGG‑TTGGTAGGCCTGATCAGCCGCCCCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:1532823/150‑1 (MQ=12) tGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc > 1:3848547/1‑150 (MQ=255) aGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGG‑ATAGTAGGCCTGATACGACGCACATCGTCGCATCAGGCAACCTCTGTCGGAGGAGGCGTAATCTCAGTCTCAGACCTACGGt > 2:1254198/1‑150 (MQ=18) aGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑ATAGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAGGCGGCGTAAACGACTTAAACGACCTACTGt > 2:829559/1‑150 (MQ=18) gTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGtt > 2:541214/1‑150 (MQ=255) tAGAGGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTAGGTTCCGG‑TTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa < 2:4468201/150‑1 (MQ=255) tAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa > 1:3064260/1‑150 (MQ=255) agagGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt > 1:2433746/1‑150 (MQ=255) agGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAGGCGGCGTAAACGCCTTATCCGACCTACGGTTCTGt > 2:3858565/1‑150 (MQ=255) gttttttttCCGGCTGCGGGAGGCGGCTTGAACGCCCAATCCCGCCTCCGTTTATGTTCGGG‑TTTGTCGGCCTTATAAGACGCACAGCGACGCATCAGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt < 1:325956/147‑1 (MQ=17) ggtttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTTTTCCGT‑TTTGTTGGCCTGATAAGACGCACAGCGGCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt < 1:2206799/147‑1 (MQ=17) tttttCCGGCGGCCGGGTGGGGCGTGAACGCCCTATCCCGCCTTGGTTTTTGTGCGGT‑TTTTTCGGCCTGATACGACGCACCGCGTCCAATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt < 1:2805761/150‑1 (MQ=14) ttttCCGGCTGCCGGAGGCGGCGTGAACGCCCTATCCAGCCTCCGGTTATGTTCCGG‑TTTGTCGGCATGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt < 2:1943098/150‑1 (MQ=17) ttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGta > 2:2908399/1‑149 (MQ=255) ttttACGGCGGCCGGTTGCGGCGTCAACGCCCTAACCCGCCTCGGTTTTTGTTCGGG‑TTGGGTGGCCTTATACGACCCACCGCGTCGCCCCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt < 1:2895383/150‑1 (MQ=14) tttAGGGCGGCCGGCTGCGGCGTGACCGCCCTACCCAGCATCGGGTTTTGTTCCGT‑TTTGTCGGCCTGATAAGACGCACTGCGTCGAACCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 1:2971627/150‑1 (MQ=17) tttACGGCGGCGGGATGCGGGGTGAACGCCCTATCCAGCCTAGGTTTTTGTTCCGG‑TTTGTAGGCCTGATAAGCCGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 2:3919661/150‑1 (MQ=17) tACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGt < 2:3752535/150‑1 (MQ=255) cGGCTGCCGGAGGCGGCGTTAACGCCATATCCAGCCTCCGGTTATGTCCCGG‑TTTGTAGGCCTTATAAGACGCACCGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg < 2:113560/150‑1 (MQ=14) gggtGCCGGTTGGGGCGTGAACGCCCTACCCAGCCTACGGTTTTGTGCGGG‑TTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAgg < 2:1235173/147‑1 (MQ=17) ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAgg > 1:125066/1‑150 (MQ=255) ggATGCGGCGTGAACGCCCTATCCGGCCTACGGTTATGTTCAGG‑ATTGTAGGCCTGTTAAGACGCACAGCGTCGCATCAGGCAACGGCTAACGGATGCGGCGTAAACGCATAAAAAGACCTACGGTGATGTTCAGTATGATGGACTGATa > 1:307065/1‑150 (MQ=14) ggAGGCGCCGTGACCGCCCAACCCACCCTACGGTT‑TTTTCCGGTTTTTTTGCCCTTATAAGACCCACCGCGACGCACCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa < 1:3971386/150‑1 (MQ=9) gATGCGGCTTGAACGCCCTATCCAGCCTACGGTTATTTTCCGG‑TTTTTAGGCCTGATAAGCCGCACAGCGTCGCAAAATGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 2:2198429/150‑1 (MQ=14) gATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa > 1:1594844/1‑150 (MQ=255) gggcgTTAACGCCCTACCCCGCCTAGGGTTTTGTTCGGT‑TTTGTTGGCCTGATACGACGCACCGGGGCGCTTCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACg < 1:131879/149‑1 (MQ=14) gTGACCGCCCTATCCAGCCTACGGTTTGGTTCGGG‑TTTGTAGGCGTGATAAGACGCACCGCGTCGAAACCGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 2:4160768/150‑1 (MQ=14) gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca > 1:694643/1‑150 (MQ=255) gTGAACGACCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAATACGCACAGCGTCGCATCGGGCAACGGCTGACGGATGCGGCGTAAACGCCTGATCCGACCTACGGTAATGTTCCGTATGTAGGCCTGATAAGACGcaaa > 2:1228458/1‑148 (MQ=14) cGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc > 2:1159024/1‑150 (MQ=255) cccTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCATATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGc > 1:1976084/1‑150 (MQ=255) cccTACCCCGCCTAGGTTTTTGTTCGGT‑TTTGTCGGCCTTATAAGACGCACCGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGc < 1:4363621/150‑1 (MQ=11) ccTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCAACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa > 1:3604093/1‑150 (MQ=255) tCCAGCCTACGTTTTTGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:3606303/150‑1 (MQ=255) tCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:2347029/150‑1 (MQ=255) aGCCTAGGGTTTTGTTCCGT‑TTTGTTGGCCTGATAACCCCCCCCGCCGCGCATCCGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa < 1:1556721/150‑1 (MQ=11) aGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa > 2:1059885/1‑150 (MQ=38) ccTCCGGTTTTGTTCCGG‑TTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc < 2:1746254/150‑1 (MQ=255) cTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg < 2:3348377/150‑1 (MQ=37) cTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCGTATCCGACCTACGGTTATGTTCCGTGTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg > 2:340115/1‑150 (MQ=255) cGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCt > 2:1162148/1‑150 (MQ=37) ggTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 1:3761920/1‑150 (MQ=37) gTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 1:1026713/1‑150 (MQ=37) gTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 1:3306957/1‑150 (MQ=37) ttATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGcc > 2:3129742/1‑150 (MQ=37) tATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCg > 2:4525297/1‑150 (MQ=37) aTGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGcctg > 2:3328695/1‑148 (MQ=37) gTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:2915239/1‑150 (MQ=37) gTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:783111/1‑150 (MQ=37) gTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCGTATCCGACCTACGGTTATGTTCCGTTTGTAGTCCTGTTAAGACTCCCAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:25654/1‑150 (MQ=11) cGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcgg > 2:4088855/1‑150 (MQ=33) cGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcgg > 2:346552/1‑150 (MQ=33) | CCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGG > CP009273/3385330‑3385628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |