| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,571 | C→G | 6.4% | intergenic (‑184/+246) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,571 | 0 | C | G | 6.4% | 634.4 / 2.4 | 227 | intergenic (‑184/+246) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base C (152/53); new base G (3/13); total (160/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.51e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 231 total aligned reads displayed.
TTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC > CP009273/3385423‑3385720 | tttttCCGGCGGCCGGGTGGGGCGTGAACGCCCTATCCCGCCTTGGTTTTTGTGCGGT‑TTTTTCGGCCTGATACGACGCACCGCGTCCAATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGt < 1:2805761/150‑1 (MQ=14) ttttCCGGCTGCCGGAGGCGGCGTGAACGCCCTATCCAGCCTCCGGTTATGTTCCGG‑TTTGTCGGCATGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGtt < 2:1943098/150‑1 (MQ=17) ttttCCGGCGGCGGGTGGCGGGGTGCACGCCATCTCCAGCCTAGGTTTTTGTTCGGT‑TTTGTAGGCCTTTTAAGACGCACTGCGTCGCATCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGtt < 1:2895375/150‑1 (MQ=14) ttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCAGta > 2:2908399/1‑149 (MQ=255) tttAGGGCGGCCGGCTGCGGCGTGACCGCCCTACCCAGCATCGGGTTTTGTTCCGT‑TTTGTCGGCCTGATAAGACGCACTGCGTCGAACCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGttt < 1:2971627/150‑1 (MQ=17) tACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGt < 2:3752535/150‑1 (MQ=255) gggtGCCGGTTGGGGCGTGAACGCCCTACCCAGCCTACGGTTTTGTGCGGG‑TTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAgg < 2:1235173/147‑1 (MQ=17) ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTatg > 1:4339434/1‑148 (MQ=255) ccGGATGCGGCGTGAACGCCCTAACCAGCCTACGTTTTTGTTCCGG‑TTTGTAGGCCTTATAAGACCCACAGCGTCGAATCAGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGa < 1:2211262/150‑1 (MQ=14) cGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TGATGTTCCGTGTGTAGGCCTGAt > 1:2079382/1‑150 (MQ=255) ggATGCGGCGTGAACGCCCTATCCGGCCTACGGTTATGTTCAGG‑ATTGTAGGCCTGTTAAGACGCACAGCGTCGCATCAGGCAACGGCTAACGGATGCGGCGTAAACGCATAAAAAGACCTACGG‑TGATGTTCAGTATGATGGACTGATa > 1:307065/1‑150 (MQ=14) ggAGGCGCCGTGACCGCCCAACCCACCCTACGGTT‑TTTTCCGGTTTTTTTGCCCTTATAAGACCCACCGCGACGCACCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATa < 1:3971386/150‑1 (MQ=9) gggcgTTAACGCCCTACCCCGCCTAGGGTTTTGTTCGGT‑TTTGTTGGCCTGATACGACGCACCGGGGCGCTTCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACg < 1:131879/149‑1 (MQ=14) gggcgTGACCGCCATACCCAGCCTAGGTTTTTGTGCGGT‑TTTGTCGGCCTCATAAGACGCACCGCGTCGCATCCGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACg < 1:157478/149‑1 (MQ=14) gTGACCGCCCTATCCAGCCTACGGTTTGGTTCGGG‑TTTGTAGGCGTGATAAGACGCACCGCGTCGAAACCGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 2:4160768/150‑1 (MQ=14) gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGcaca > 1:694643/1‑150 (MQ=255) gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCGTATCCGACCTACGG‑TTATGTTCAGTTTGTTGGCCTGATAAGACGcaga > 2:1228683/1‑148 (MQ=255) aCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTGTGTAGGCCTGATAAGACGCACAGCGt > 2:1178805/1‑150 (MQ=255) cGCCCTATCCAGCCTACGGTTATGTTCCGG‑GTAGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAGGCGGCGTGAACGCCGTATCCGACCTACGG‑GGATGGTCCGTGTGTAGGCCTGATCAGACGCACGGCGTc > 2:1159451/1‑150 (MQ=14) gCCCTATCCAGCCTACGGTTCTGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCAACAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg < 2:4493761/150‑1 (MQ=255) gCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAGGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 2:3373802/1‑150 (MQ=255) ccTATCCAGCCTCCGGTTATGTTCCGG‑TTTTTAGGCCTGATAACACGCACAGCGTCGCAACAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa < 2:2351084/150‑1 (MQ=14) ccTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCAACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa > 1:3604093/1‑150 (MQ=255) tCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:720523/150‑1 (MQ=40) cAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc > 1:1521627/1‑150 (MQ=39) ccTCCGGTTTTGTTCCGG‑TTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc < 2:1746254/150‑1 (MQ=255) cTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg > 2:1631802/1‑150 (MQ=37) cTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg < 2:3348377/150‑1 (MQ=37) tACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAATGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgg < 2:2202817/150‑1 (MQ=37) ggTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 1:3761920/1‑150 (MQ=37) gTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 1:1026713/1‑150 (MQ=37) gTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 1:3306941/1‑150 (MQ=37) gTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:2915103/1‑150 (MQ=37) gTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTATGTATGCCTGATAAGACGCACAAAGTCGCATCAGGCAACCGCTGCCGGAt > 1:783125/1‑150 (MQ=11) ttCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGTCCTACGG‑GTAGGTTCCGTGTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATg > 2:4043052/1‑150 (MQ=255) cGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcgg > 2:346552/1‑150 (MQ=33) gg‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggc > 2:4453683/1‑150 (MQ=32) gg‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGGAAACGCCTTATCCGACCTACGG‑TTATGTTCAGTGTGTAGGCCTGATCAGACGCACAGAGTAGCATCAGGCAACGGCTGACGGAGgctgc > 2:4453384/1‑150 (MQ=11) g‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggcg > 1:877687/1‑150 (MQ=32) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTATGCCTGATAAGACGCACAGAGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:3846832/1‑150 (MQ=18) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:3188623/1‑150 (MQ=33) gTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGGTTGTAGGCCTGATAAGACGCACAGCGTCGCCTCAGGCAACGGCTGCCGGAGGCGGCGTcaa > 2:3183266/1‑150 (MQ=255) tAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTGGGCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGCCGGAGGCGGCGTAAAc > 2:3701276/1‑150 (MQ=255) aGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg > 1:4230830/1‑150 (MQ=34) gCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGcc > 2:1577043/1‑150 (MQ=34) gCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGcc > 2:3855405/1‑150 (MQ=34) aTAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCGTATCCGACCTACGG‑TTATGTTCCGTCTGTAGGCCTGATAGGACGCACAGCGGCGCATCAGGCTCCGGCTGCCGGAAGCGGCGTAAACGccggatc > 2:1874688/1‑145 (MQ=11) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGGTTGTAGGCCTGATAAGACGCACAGCGTCGCCTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATcc > 2:20591/1‑150 (MQ=255) aaGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCg > 2:2263390/1‑150 (MQ=37) cGCACTGCGTCGCCTCCGCCCAGGGCGGGGGTAGGCGGCTTAACGGCCTTAGCCGACCTACGT‑TTTTGTTCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:2485527/150‑1 (MQ=11) caGCGTCGCATCAGGCAACGGCTGTCGGAGGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTGTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAGGCGGCGTAAACGCCTGATCCGACCTACgg > 2:4262167/1‑150 (MQ=255) cGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa > 1:1828272/1‑150 (MQ=37) gCATCTGGCACGGGGTGTGGGTTGCGGCTTAACCGCATTACCCGACATACGT‑TTATTTTCCTTTTGTTGGCCTTATAAGACGCACTGCGTCGCATCTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt < 2:1787729/150‑1 (MQ=11) cATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCGTATCCGACCTACGG‑TTCTGTTCCGTGTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGGTc > 2:1090007/1‑150 (MQ=255) atctgccAAGGGCTGTCGGATGCGGCTTAACCGCCTTACCCGACCTACGG‑TTATGGTCGGTTTTTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 2:3287302/144‑1 (MQ=11) aGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt > 2:1480571/1‑150 (MQ=255) aGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTAGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTGATGGTCAGtc > 2:4269479/1‑149 (MQ=255) ggCAAGGGCTGTCGGATGCGGGGTACACGCCTTATCCGCCCTACGT‑TTATTTTCCGTTTTTCGGCCTGTAAAGACGCACAGGGTCGCATCAGGAAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 2:4520666/150‑1 (MQ=14) tcacgggCTGGCGTATGCGGCTAAAACGCATTATCCG‑CCCACGGTTTATTTTCGGTTTGTCGGCCTTATAAGACGCACAGCGTCGCATCTGCCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg < 1:2939530/145‑1 (MQ=11) aaCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTa > 2:3088446/1‑150 (MQ=255) aaCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTa > 2:3214567/1‑150 (MQ=255) aaCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTGATGTTCCGTGTGTa > 2:3475364/1‑150 (MQ=255) aaCGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGtatcgt > 2:1487697/1‑145 (MQ=255) gTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGa > 2:1039016/1‑150 (MQ=255) tgggcggcggcgTAAAGGCCTCATCCGCCCTACGG‑TTTTGTACGGTTTGTAGGCCTGATAAGCCGCACCGGGTGGCATCTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAt < 2:2605712/144‑1 (MQ=14) cGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa > 2:559611/1‑150 (MQ=255) cGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCGTAGCCGACCTCCGGTTAGGTGCCGGGTGTAGGCCTGATa > 1:4207229/1‑150 (MQ=14) ggATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa > 1:1130532/1‑150 (MQ=255) aTGCGCCGTAACCGCCTTCCCCGCCCTCGGG‑TTAGGTTCGGTTTGTAGGCCTGATACGACGCACCGCGCCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 2:3307702/150‑1 (MQ=14) ggcgTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGca > 1:1131696/1‑150 (MQ=255) ggcgTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCAACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGca > 1:4371058/1‑150 (MQ=255) aaaCGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTGTAGGCCTGATAAGACGCACAgag > 2:509834/1‑148 (MQ=255) aaaCGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTATGTAGGCCTGATAAGACGCAAAgac > 1:3494712/1‑148 (MQ=255) aaaCGCCTTAGCCGACCTACGT‑TTTTGTTCCGTTTTTCGGCCTGATAAGACGCACAGCGTCGAATCCGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCg < 2:222603/150‑1 (MQ=14) aaCGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGt > 2:113856/1‑150 (MQ=255) aCGCCTTATCCTCCCTTCTG‑TTATGTTCCGTTGGTCGGCCTGATAAGACGCACAGCGACGCATCAGCCCACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc < 1:3317280/150‑1 (MQ=11) cGCCTTATCCGACCTCTGT‑TTTGGTTCGGTTTGTCGCCCTTATAAGCCGCACAGCGTCGCAACTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg < 2:792866/150‑1 (MQ=11) cGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 2:1019706/1‑150 (MQ=255) cGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:1229550/1‑150 (MQ=255) cTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 1:2373671/1‑150 (MQ=255) ttATCCGACCTACGG‑TTTTGTACGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 2:3306941/150‑1 (MQ=255) ttATCAGACATAGGG‑TTTTGTTCCGTTTGTTGGCCTGATAATACGAACAGGGTCGCATCTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 2:4109986/150‑1 (MQ=14) aTCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg > 2:2979371/1‑150 (MQ=40) aTCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg > 1:122544/1‑150 (MQ=40) aTCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCCACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg > 1:1663290/1‑150 (MQ=255) tCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg > 2:3525081/1‑150 (MQ=40) cGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa > 1:3001172/1‑150 (MQ=38) aCCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc > 1:1854370/1‑150 (MQ=37) ccTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg > 1:2724300/1‑150 (MQ=35) tACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTCTCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 1:1177057/1‑150 (MQ=25) tACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 2:4026053/1‑150 (MQ=35) cGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGACGCATCAGGCAACGGCTg > 2:4330088/1‑150 (MQ=25) agg‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGTCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 2:1321274/2‑150 (MQ=25) gg‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 1:2145682/1‑150 (MQ=35) gg‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 2:4387233/1‑150 (MQ=35) gg‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 1:535177/1‑150 (MQ=35) aTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTGTAGGCCTGATAAGACGCACAGCGACGCATCAGGAAAAGGCTGCCGGa > 1:3905504/1‑150 (MQ=255) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcgg > 1:2565348/1‑150 (MQ=33) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCGTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcgg > 1:2565459/1‑150 (MQ=18) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggc > 1:1272452/1‑150 (MQ=32) | TTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGG‑TTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGC > CP009273/3385423‑3385720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |