| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,507,749 | G→T | 67.7% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,507,749 | 0 | G | T | 67.7% | 278.5 / 287.2 | 254 | H224N (CAT→AAT) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase |
| Reads supporting (aligned to +/- strand): ref base G (43/39); new base T (74/98); total (117/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01 | |||||||||||
Only 100 of 255 total aligned reads displayed.
TCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCACGCCACCGTCCACTTCT > CP009273/3507601‑3507897 | tCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCACGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGa < 2:964807/150‑1 (MQ=255)tCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGa > 2:3071971/1‑150 (MQ=255) ctggTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCAATATCTACCGCAGCAGCAAGACCAGGTGCACTGTCGACCTGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACt < 2:1126059/148‑1 (MQ=255) cAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACt > 1:3683394/1‑150 (MQ=255) cAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACt > 2:2422847/1‑150 (MQ=255) gTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGAAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATAAAAAGCGACGCCGCGAATATCTTCAAACTTATTCAttacttac < 2:3805882/150‑1 (MQ=255) taaCGCGTTCTTCACCTGCGAGGGGAAACTCCAGCGAATACAGCGCCATATCTCCCGCAGCAGCACGACCCGGAGCACTGTCGACCAGCTTACCATAAAGATAAAACGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCttt < 1:151714/150‑1 (MQ=255) taaCGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCttt > 1:135108/1‑150 (MQ=255) aaCGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTg > 1:1687513/1‑150 (MQ=255) gTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCGGt > 2:1530374/1‑150 (MQ=255) tcttcACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTc > 2:4028835/1‑150 (MQ=255) tcttcACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTc > 2:1583456/1‑150 (MQ=255) cttcACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCa > 2:4372721/1‑150 (MQ=255) tcACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACt < 2:3749613/150‑1 (MQ=255) cACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCGACCGCAGCAGCAAGACCTGGAGCACTGTCGACCAGCGTACCATCAAGAACAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTg < 1:3969300/150‑1 (MQ=255) gCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCAt < 2:3354908/150‑1 (MQ=255) gCGACGGGCAACTCCAGCGCATACAGCGCAATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCAt < 2:1910321/150‑1 (MQ=255) cGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCAtt > 2:889044/1‑150 (MQ=255) gACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCAttt < 2:726746/150‑1 (MQ=255) cGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTtca < 1:1856582/150‑1 (MQ=255) gggCAACTCCCGCGCATACCGCGCCATATCTACCGCAGCCGCAAGACCCGGAGCACTGGCGACCCGCGTACCATCAAGATCAAACGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTtcat < 1:207769/150‑1 (MQ=255) aaCTCCAGCGCATACAGCGCCATATCTCCCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAACGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAAt < 1:1051909/150‑1 (MQ=255) tCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAc < 2:219231/150‑1 (MQ=255) ccAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑t > 1:1022666/1‑150 (MQ=255) ccAGCGAATACAGCGCAATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACAAACAATATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑t < 1:508662/150‑1 (MQ=255) cAGCGAATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCCGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑tt < 1:599963/150‑1 (MQ=255) aGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑ttt < 1:1497936/150‑1 (MQ=255) cgaaTACAGCGCAATATCTCCCGCAGCAGCAAGACCAGTAGAACTGTCGACCAGCTTACCAACAATATAAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑ttttt < 1:2294736/147‑1 (MQ=255) gcATACAGCGCAATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑tttttt < 1:2998377/150‑1 (MQ=255) cATACAGCGCAATATCTACCGCAGCAGAAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTg < 1:4258638/150‑1 (MQ=255) aTACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGt < 2:1637872/150‑1 (MQ=255) aGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTAATTACTTACCTTTGCCAGTTCACTGCGAATTTCATCAATGAC‑TTTTTTGTAGTc > 2:2380969/1‑150 (MQ=255) cgcCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCTTACCATCAAGATCAAACGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTctg < 1:4431310/150‑1 (MQ=255) cgcCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTctg < 1:1739203/150‑1 (MQ=255) cgcCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGAGCAAAAGCGACGCCGCGAATATCTTCAAACTTAGTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTctg < 1:3003334/150‑1 (MQ=255) cATATCTACCGCAGCAGCAATACCAGGAGCACTGTCGACCCGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTctggct < 1:2497549/150‑1 (MQ=255) cATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTctggct < 2:3638330/150‑1 (MQ=255) atatCTCCCGCAGCCGAAAGACCTGTCGCAGTGTCGCCCCGCGTACCACCAAGAACAAACGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTctggctg < 1:1920322/150‑1 (MQ=255) tatCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCCATGAC‑TTTTTTGTAGTctggctgg > 1:3173843/1‑150 (MQ=255) tatCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTctggctgg > 1:722764/1‑150 (MQ=255) atCTACCGCTGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCACGATCAAAAGCGACGCGGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTCGTCGGGCTGGt < 2:648499/150‑1 (MQ=255) atCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGt > 1:2006598/1‑150 (MQ=255) cTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCg > 2:4206042/1‑150 (MQ=255) cGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGa > 2:2251617/1‑150 (MQ=255) gcagcaccaAGACCAGGCGCAGTGTCGACCAGCGTACCAAAAAGATCAAACGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGAt < 1:3071971/150‑1 (MQ=255) ccgcagcaAGACCAGGAGCACTGTCGACCCGCGTACCATCAAGATCAAACGCGACGCCGCGAATATCTTCAAACTTATTCATGACGTACCTTTGCCAGGTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGAtt < 2:1062042/148‑1 (MQ=255) agcagcaAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTg > 1:3509067/1‑150 (MQ=255) gcagcaAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGc < 1:3610869/150‑1 (MQ=255) cagcaAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTTGTAGTCTGGCTGGTCGAAGATTGc > 1:1384184/1‑150 (MQ=255) cagcaAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGcc < 2:2698192/150‑1 (MQ=255) cagcaAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGcc < 2:1358892/150‑1 (MQ=255) aaGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAAc > 2:2675759/1‑150 (MQ=255) aaGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAAc > 2:1166631/1‑150 (MQ=255) aGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAAcc < 2:2759552/150‑1 (MQ=255) gACCCGGAGCACTGTCGACCAGCGTACCAAAAAGATCAAACGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCg < 1:3574330/150‑1 (MQ=255) aGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGcgacga > 2:2084278/1‑150 (MQ=255) aGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGcgacga > 1:323771/1‑150 (MQ=255) aGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGcgacga > 1:4119901/1‑150 (MQ=255) aGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGcgacga > 1:2382250/1‑150 (MQ=255) aCTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACa < 2:1740903/150‑1 (MQ=255) aCTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACa > 1:2842772/1‑150 (MQ=255) cTGTCGACCAGCGTACCATCAAGAACAAAAGCGACGCCGCGAATATCTTCAAACTTATTAATTAATTACATTTGCCAGTTCACTGCGCATTTCAACAATTAA‑TTTTTTTTATTATGGCTGGTCGAAGATTGCAGAACAGGCGACGAACat > 2:294297/1‑150 (MQ=255) gTCGACCAGCGTACCATCAAGATCAACAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACatat < 2:3642251/150‑1 (MQ=255) tCGCCCAGCGTACAATAAACATAAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATc < 1:4186849/150‑1 (MQ=255) cGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATcc > 2:3316472/1‑150 (MQ=255) cGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATcc > 1:3718244/1‑150 (MQ=255) gACCCGCGTACCATCAAGATCAAACGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATNcg < 2:1528895/150‑1 (MQ=255) gACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCcg > 1:977792/1‑150 (MQ=255) gACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCcg > 1:162077/1‑150 (MQ=255) gACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCcg > 1:636809/1‑150 (MQ=255) aCCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCcgc > 2:1014639/1‑150 (MQ=255) gTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGcgcccgc > 2:2261974/1‑150 (MQ=255) tACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGcgcccgcc < 2:3018414/150‑1 (MQ=255) aGATCAAACGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGAt < 1:4216474/150‑1 (MQ=255) aGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGAt > 1:1641354/1‑150 (MQ=255) aTCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGAttt < 1:1464604/150‑1 (MQ=255) tCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTc > 1:4508475/1‑150 (MQ=255) aaaaGCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGc > 1:4272563/1‑150 (MQ=255) aaGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCa > 2:4337024/1‑150 (MQ=255) gCGACGCCGCGAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAAt < 1:3408820/150‑1 (MQ=255) aCGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAAtgtt < 1:3437424/150‑1 (MQ=255) gccgcGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACAGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAAtgttgt > 2:2585796/1‑150 (MQ=255) gccgcGAATATATTCAAACTTATTCATGAATTACCTTTGCCAGATCACTGCGCATTTCATCAATGAA‑TATTTTGTAGTCTGGCTGGTCGAAAATAGACGAACCGGCGACGAACATATCCTCGCACGCCGCAGCGATTTCGCCAAtgtagt > 2:3149387/1‑150 (MQ=255) ccgcGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATgttgtt < 1:3775285/150‑1 (MQ=255) cgcgAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTc < 1:990914/150‑1 (MQ=255) cgcgAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTc > 1:1213392/1‑150 (MQ=255) cgcgAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTc > 1:1785884/1‑150 (MQ=255) cgAATATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCAc < 2:1504770/150‑1 (MQ=255) cgAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGGTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCAc < 2:2600631/150‑1 (MQ=255) aaTATCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCt > 1:4099288/1‑150 (MQ=255) atatCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCtt < 2:4480126/150‑1 (MQ=255) tCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCAc < 2:1803078/150‑1 (MQ=255) tCTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCAc > 1:3327827/1‑150 (MQ=255) tCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCAc > 2:1487380/1‑150 (MQ=255) cTTCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCACg > 1:3821351/1‑150 (MQ=255) ttCAAACTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCACGc > 2:397451/1‑150 (MQ=255) aCTTATTCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCACGCCACCg > 1:4425749/1‑150 (MQ=255) tCATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCACGCCACCGTCCACt < 1:2737798/150‑1 (MQ=255) cATTACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCACGCCACCGTCCACtt < 1:3811634/150‑1 (MQ=255) tGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCACGCCACCGTCCACTTCt > 1:3783517/1‑150 (MQ=255) | TCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGAC‑TTTTTTGTAGTCTGGCTGGTCGAAGATTGCCGAACCGGCGACGAACATATCCGCGCCCGCCGCAGCGATTTCGCCAATGTTGTTCACCTTCACGCCACCGTCCACTTCT > CP009273/3507601‑3507897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |