| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,665,617 | C→A | 13.3% | intergenic (‑363/‑157) | yhjB ← / → yhjC | putative DNA‑binding transcriptional response regulator/LysR family putative transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,665,617 | 0 | C | A | 13.3% | 966.0 / 94.5 | 293 | intergenic (‑363/‑157) | yhjB/yhjC | putative DNA‑binding transcriptional response regulator/LysR family putative transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (129/125); new base A (21/18); total (150/143) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
Only 100 of 296 total aligned reads displayed.
GTTAGTACGCATGCAATTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAATCGGT > CP009273/3665468‑3665766 | gtTAGTACGCATGCAATTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTc < 2:2095355/150‑1 (MQ=255) aGTACGCATGCAATTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCAcc > 2:3868136/1‑150 (MQ=255) gTACGCATGCAATTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCt > 2:2819950/1‑150 (MQ=255) ccaatcaaataaaaaataaaaTTCCGCCACAACAAGCAAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTtc < 1:4283033/143‑1 (MQ=255) tGCAATTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAg > 2:1481285/1‑150 (MQ=255) tGCAATTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAg > 1:354567/1‑150 (MQ=255) cAATTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGaa < 2:3469290/150‑1 (MQ=255) aaTTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGaaa < 2:4335451/150‑1 (MQ=255) ttAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGc > 1:1397435/1‑150 (MQ=255) ttAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGc > 1:100453/1‑150 (MQ=255) tAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCt > 1:4365090/1‑150 (MQ=255) aaaaaTGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTa > 2:2296159/1‑150 (MQ=255) aaaTGAAATTCCGCGACCACACGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTAtt < 1:4203286/150‑1 (MQ=255) aaaTGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTAtt < 1:1770771/150‑1 (MQ=255) aaTGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTc > 2:1404721/1‑150 (MQ=255) aaTGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTGTAAGGGGATTCACCTTTCTCAGAAAGCTATTc > 2:4447580/1‑150 (MQ=255) tttCCGCGACCACAAGCAAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCt < 1:619910/149‑1 (MQ=255) ccGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCtttt < 2:4035770/150‑1 (MQ=255) cgACCACAAGCCAAAATAACACACGGCAAGGAGACAAAACTACGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCct < 2:192444/150‑1 (MQ=255) cgACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCTTTTCct < 2:2421433/150‑1 (MQ=255) ccACAAGCCAAAATAACACACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCctgct < 2:3652845/150‑1 (MQ=255) cacaAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCctgctg < 2:3896965/150‑1 (MQ=255) acaAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTga > 1:376296/1‑150 (MQ=255) acaAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTga > 1:2641202/1‑150 (MQ=255) aaGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTgaga > 2:3993253/1‑150 (MQ=255) aaGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTgaga > 2:2385728/1‑150 (MQ=255) aaGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTgaga > 2:1842456/1‑150 (MQ=255) aGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGaa > 1:2990002/1‑150 (MQ=255) ccAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAAt > 1:4191588/1‑150 (MQ=255) aaTAACACACGTCAAGTAGACAAAAATATGCACAAATAGCCAACACGTACTCTGTTCTCTTTAAAGGGAATAGCTGAAAAATACGCTCTGTTTAATGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCTcc < 1:2774567/150‑1 (MQ=255) aTAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCca < 2:3345285/150‑1 (MQ=255) aaCACACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCcaca < 1:3292198/150‑1 (MQ=255) aaGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGa > 1:365140/1‑150 (MQ=255) ggAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGaca > 1:860044/1‑150 (MQ=255) gaCAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGacaaca < 1:2286789/150‑1 (MQ=255) gaCAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGacaaca > 2:2565168/1‑150 (MQ=255) aCAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACAt < 2:1712981/150‑1 (MQ=255) cAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACAtt > 2:737776/1‑150 (MQ=255) cAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACAtt > 1:1255116/1‑150 (MQ=255) cAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACAtt > 2:1568808/1‑150 (MQ=255) aaaaaTAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATtg > 1:1066320/1‑150 (MQ=255) aaaaTAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATtgt < 1:3721782/150‑1 (MQ=255) aaTAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGa < 1:3231298/150‑1 (MQ=255) aTAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGaa > 2:4154253/1‑150 (MQ=255) cacaAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCg > 1:3078136/1‑150 (MQ=255) cacaAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCg < 1:1853212/150‑1 (MQ=255) acaAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCgg > 2:1607671/1‑150 (MQ=255) acaAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCgg < 2:3000978/150‑1 (MQ=255) caAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGc > 1:3756122/1‑150 (MQ=255) caAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGc > 1:510289/1‑150 (MQ=255) aaaTAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGcc > 1:3556178/1‑149 (MQ=255) aTAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCAtt < 2:898808/150‑1 (MQ=255) tAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTa < 2:2901213/150‑1 (MQ=255) ccAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACACCATTGTGAAACCCGGCATTAGAt > 2:3969867/1‑150 (MQ=255) ccAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGAt < 1:1962340/150‑1 (MQ=255) ccAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGAt > 1:4524392/1‑150 (MQ=255) ccAACACGTCCTCTGTTCACTTTAAAGGGAATCGATGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGAt < 2:2216931/150‑1 (MQ=255) cAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATg < 1:3896644/150‑1 (MQ=255) cAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATg > 2:1297894/1‑150 (MQ=255) cacGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTa > 2:2477358/1‑150 (MQ=255) cacGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTa > 1:770392/1‑150 (MQ=255) cacGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTa > 2:1069699/1‑150 (MQ=255) tCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGaaa < 2:4088215/150‑1 (MQ=255) tCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGaaa < 1:678627/150‑1 (MQ=255) ccTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGaaaa > 1:2922857/1‑150 (MQ=255) ctctGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGaaaaa > 1:3500367/1‑150 (MQ=255) ctctGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGaaaaa > 1:3918467/1‑150 (MQ=255) ctGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAaaac < 1:2022860/150‑1 (MQ=255) ctGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAaaac > 1:3219243/1‑150 (MQ=255) ctGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAaaac < 1:447955/150‑1 (MQ=255) ctGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAaaac > 1:4389549/1‑150 (MQ=255) tttAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAaaacaataaaca < 1:99939/150‑1 (MQ=255) tttAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAaaacaataaaca < 1:2488641/150‑1 (MQ=255) aaaGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTAGTCCGCCCTTTTCCTGCTGAGAAATAGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAaaacaataaacaata < 2:3166986/150‑2 (MQ=255) aaGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGc < 2:946115/150‑1 (MQ=255) aaGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGc > 1:2868928/1‑150 (MQ=255) aaGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGc > 2:3133845/1‑150 (MQ=255) aaGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGc > 2:1054105/1‑150 (MQ=255) cGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATgcg < 1:4026146/150‑1 (MQ=255) cGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATgcg < 2:3743384/150‑1 (MQ=255) cTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGcgcg > 2:1217709/1‑150 (MQ=255) cTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGcgcg < 1:2177823/150‑1 (MQ=255) cTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGcgcg > 1:1103987/1‑150 (MQ=255) gAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGtt > 2:2795476/1‑150 (MQ=255) aaaTACGCTCTGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACt < 1:820388/150‑1 (MQ=255) aaTACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTTCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTg < 1:1433023/150‑1 (MQ=255) aaTACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTg > 2:2331021/1‑150 (MQ=255) tACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGtt < 1:1652855/150‑1 (MQ=255) cGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTc > 1:3349793/1‑150 (MQ=255) ctctGTTTAAGGGGATTAACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGc > 1:4090117/1‑150 (MQ=255) gTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCtgtg < 2:203762/150‑1 (MQ=255) gTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCtgtg < 1:895987/150‑1 (MQ=255) tAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGaac < 1:1287323/150‑1 (MQ=255) aaGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGaaca > 1:272846/1‑150 (MQ=255) aGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGaacaa > 2:2607051/1‑150 (MQ=255) ggggATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGaacaac < 2:3755708/150‑1 (MQ=255) gATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAAt < 2:529737/150‑1 (MQ=255) aTTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAATc < 1:560149/150‑1 (MQ=255) aTTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAATc < 1:3519842/150‑1 (MQ=255) tCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAATCgg > 1:1597597/1‑150 (MQ=255) | GTTAGTACGCATGCAATTAAAAATGAAATTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAATCGGT > CP009273/3665468‑3665766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |