mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3814423 = | 241 (0.940) | 11 (0.040) | 7/278 | NT | 4.4% | coding (108/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| ? | CP009273 | = 4489328 | NA (NA) | intergenic (+11/+82) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | CP009273 | 3645396 = | NA (NA) | 4 (0.020) | 4/278 | NT | 1.8% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3796549 = | 218 (0.850) | coding (949/1080 nt) | waaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase | |||||
| * | ? | CP009273 | = 3600752 | 294 (1.150) | 3 (0.010) | 3/260 | NT | 1.1% | coding (942/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | CP009273 | 3600909 = | 241 (1.010) | coding (1099/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 7 (0.030) | 5/278 | NT | 3.0% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3362354 = | 225 (0.880) | intergenic (+41/+19) | yhcG/yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 8 (0.030) | 6/278 | NT | 3.1% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3814427 | 248 (0.970) | coding (104/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 5 (0.020) | 3/278 | NT | 2.1% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3362358 | 235 (0.920) | intergenic (+45/+15) | yhcG/yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily | |||||
| * | ? | CP009273 | = 2897461 | 300 (1.170) | 4 (0.020) | 4/218 | NT | 1.7% | intergenic (+728/+645) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | CP009273 | 2897767 = | 237 (1.180) | intergenic (+1034/+339) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | CP009273 | = 2811301 | 162 (0.630) | 7 (0.030) | 6/238 | NT | 4.1% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 193 (0.880) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2811027 | 237 (0.930) | 9 (0.040) | 9/236 | NT | 4.8% | intergenic (‑165/+116) | yqaB/argQ | fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg |
| ? | CP009273 | 2811301 = | 160 (0.740) | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | CP009273 | = 1334062 | 230 (0.900) | 5 (0.020) | 3/270 | NT | 2.2% | coding (476/765 nt) | pgpB | phosphatidylglycerophosphatase B |
| ? | CP009273 | 1334068 = | 221 (0.890) | coding (482/765 nt) | pgpB | phosphatidylglycerophosphatase B | |||||