Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 235,022 G→T 19.7% H68N (CAT→AAT)  ykfM ← lethality reduction protein, putative inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273235,0220GT19.7% 454.8 / 23.2 239H68N (CAT→AAT) ykfMlethality reduction protein, putative inner membrane protein
Reads supporting (aligned to +/- strand):  ref base G (118/60);  new base T (9/49);  total (128/111)
Fisher's exact test for biased strand distribution p-value = 9.57e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 243 total aligned reads displayed.

CCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAGGGAAAAATA  >  CP009273/234874‑235168
                                                                                                                                                    |                                                                                                                                                   
ccTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATg                                                                                                                                                     <  2:1975741/149‑1 (MQ=255)
ccTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATg                                                                                                                                                     <  1:4229617/149‑1 (MQ=255)
      aCAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATAtt                                                                                                                                               <  1:1529124/149‑1 (MQ=255)
         aaaGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTaa                                                                                                                                            <  1:405623/149‑1 (MQ=255)
          aaGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTTAGAATGATTTTTTTATAGTAATTAAAATTAAAAGAATATTTaaa                                                                                                                                           >  1:3521039/1‑149 (MQ=255)
           aGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATGAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATAGTAAGTAAAATTAAATGAATATTTaaaa                                                                                                                                          >  2:5041831/1‑149 (MQ=255)
           aGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTTTTTAATAAATATTTTATTATAGTAATTAAAAATAAAATAATAATTaaaa                                                                                                                                          >  1:940857/1‑149 (MQ=255)
           aGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAATAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTaaaa                                                                                                                                          >  2:1096/1‑149 (MQ=255)
            ggAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTTATAATGATTTTATTATCGTAAATAAAAATACATGAATATTTaaaaa                                                                                                                                         >  1:1018707/1‑149 (MQ=255)
              aGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATTATTTTATTATAGTAATTAAAATTACATGAATATTTaaaaatg                                                                                                                                       >  2:628883/1‑147 (MQ=255)
              aGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAgg                                                                                                                                       <  1:3182597/149‑1 (MQ=255)
              aGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAgg                                                                                                                                       <  1:3183075/149‑1 (MQ=255)
               gCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGa                                                                                                                                     >  2:1275758/1‑149 (MQ=255)
                cTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGaa                                                                                                                                    <  1:716356/149‑1 (MQ=255)
                 tATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTTAGAATGATTTTATTTTAGTTAGTAAAATTAAATGAATATTTaaaaattaaa                                                                                                                                    >  1:3343516/1‑144 (MQ=255)
                 tATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAATAATGATTTTATTATAGTAAGTAAAATTACATGAATATTTAAAAAGGaaa                                                                                                                                   >  2:652023/1‑149 (MQ=255)
                  aTTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACATTCGTTTTTTTTATTAACAAATATTTTATTATAGTTAGAAAAATTACAAAAATATTTAAAAATGaaaa                                                                                                                                  >  1:2928252/1‑149 (MQ=255)
                   ttAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTaaaaat                                                                                                                                        >  2:400175/1‑142 (MQ=255)
                     aatggTGATATTAAGATAGATTTTATTAAAAATATAATTGTTAGGTGTTTTGTTTTGTCTGTGGCTAAATTGACTACTTTCGTTTTTTTTTTTATTAATTATTTTATTATCTTAAGTAAAATTACATTAATATTTAAAAAGGAAAACGa                                                                                                                               <  1:1746049/146‑1 (MQ=255)
                     aaaGGTTCTATTACGATAGCAATTAGTAAAAATATAAGAGTTAGATGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGa                                                                                                                               <  2:4673842/149‑1 (MQ=255)
                     aaaGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGa                                                                                                                               <  2:718976/149‑1 (MQ=255)
                     aaaGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGa                                                                                                                               <  2:1787158/149‑1 (MQ=255)
                      aaGGTGCTATTACGATAGCTATTATTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGAc                                                                                                                              <  2:856417/149‑1 (MQ=255)
                      aaGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGAc                                                                                                                              >  2:2799201/1‑149 (MQ=255)
                       aggttatATTACTATAGCTATTATTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCTAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACa                                                                                                                             <  2:3171961/143‑1 (MQ=255)
                       aGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTAAAAGAAAATTTAAAAAGGAAAACGACa                                                                                                                             >  1:701102/1‑149 (MQ=255)
                           gCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGTTTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGaa                                                                                                                         >  2:313233/1‑149 (MQ=255)
                            cTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATAGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACAAGaaa                                                                                                                        >  1:2424075/1‑149 (MQ=255)
                             tATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGaaaa                                                                                                                       >  2:409918/1‑148 (MQ=255)
                                tACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAATAATTATTTTATTATAGTAAGTAAAAATACATGAATATTTAAAAATGAAAACGACAAGAAAACGa                                                                                                                    >  1:4601870/1‑149 (MQ=255)
                                    ttAGATATTTTTAAAAATATAATATTTTGTTTTATTTTTTTTTCTGTGGCGAATTTGACTACTTTCGTTTTTTTTATTAAGATTTATTTTTTTATCTTAATTAAATTTACTTTATTATTTAAAAAGTAACACGACATGAAACCGAAGca                                                                                                                <  2:600627/148‑1 (MQ=255)
                                    aTAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTATTAATTATTTTTTTATAGTAATTAAAATTAAATTAATATTTAAAAATGAAAAAGACATTAAAACGAAGca                                                                                                                >  1:525270/1‑149 (MQ=255)
                                        cTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATTATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACAAGAAACCGAAGCACAGa                                                                                                            >  1:4305160/1‑149 (MQ=255)
                                           ttAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTAAGAATGATTTTATTATCGTAAGTAAAATTAAATGTATATTTAAAAATGAAAAAGACATGAAACCGAAGCACAGAATc                                                                                                         >  1:2509232/1‑149 (MQ=255)
                                           ttAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATc                                                                                                         >  2:2573776/1‑149 (MQ=255)
                                                aaaaaTATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAATGAAAAAGACATGAAACCGAAGCACAGAATCAAAAt                                                                                                    >  1:4665015/1‑149 (MQ=255)
                                                aaaaaTATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTAAGAATGATTTTATTATAGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACAAGAAACCGAAGCACAGAATAAACaa                                                                                                    >  1:2361604/1‑148 (MQ=255)
                                                aaaaaTATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTAAATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACAt                                                                                                    >  2:367715/1‑149 (MQ=255)
                                                  aaaTATAAGAGTTAGCTTTATTTTTATGTCTGTGGCTAAATTGACTACCTTCTTTTTTTTTATTAATAATGATTTTATTATCTTAAGTAAAATTAAATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATtc                                                                                                  <  2:2971837/149‑1 (MQ=255)
                                                     tataAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATAAACATTCTcc                                                                                               >  2:3860328/1‑149 (MQ=255)
                                                     tataAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATAGTAAGTAAAATTAAATTAATAATTAAAAAGGAAAAACAACAGAAAAACAATCACAGAATAAACATTCTcc                                                                                               >  2:1339178/1‑149 (MQ=255)
                                                       taAGTGTTCGCTGTATTTTTATGTCTGTGGCGAAATTGACGACCTTCGTTTTTTTGATTAATAATGATTTTATTATCGTAATTAAAATTACATGAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCaa                                                                                             <  2:1500318/149‑1 (MQ=255)
                                                        attatttAGTTGTTTTGTTATGTCTTTGGCTAATTTGACTACCTTCTTTTTTTTTATTAAGATTTATTTTTTTATCTTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAAt                                                                                            <  1:3894943/144‑1 (MQ=255)
                                                        aaGTGTTTGCTTTATTTTTTTGTCTTTGGCTAAATTGACTACATTGGTTTTTTTTATTAATATTGATTTTATTATCTTAAGAAAAATTACATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAAt                                                                                            <  1:771711/149‑1 (MQ=255)
                                                        aaGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAAt                                                                                            >  2:1220846/1‑149 (MQ=255)
                                                          gagTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAAAGAAAAGAAACCGAAGCACACAATCAACATTCTCCAATCa                                                                                          >  2:3648294/1‑149 (MQ=255)
                                                           agTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTTAGTATGATTTTATTATAGTAATTTAAATTAAATGAATTTTTTAAATTGTAAAAGACATGAAACAGAAGCACAGGATCAAAATTGTGCAATCAt                                                                                         >  2:4770593/1‑149 (MQ=255)
                                                            gTTAGCTTTATTTTTTTGTCTGTGGCTAAATTGACTACATTCTTTTTTTTTATTAATAATTATTTTATTATCTTAATTAAAATTAAATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATa                                                                                        <  2:722225/149‑1 (MQ=255)
                                                             ttAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATTATTTTATTATAGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATTAAACCGAAGCACAGAATCAACATTATCCAAtaataa                                                                                       >  2:4842192/1‑149 (MQ=255)
                                                              tAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACATTCGTTTTTTTGATTATGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATaaa                                                                                      <  2:292596/149‑1 (MQ=255)
                                                                  tGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAAACATAAAatat                                                                                  >  2:2474427/1‑149 (MQ=255)
                                                                   ttATTGTTTTGTCTGTGGCTAAATTGACTACCTTCTTTTTTTTGATTAATAATGATTTTATTATCGTAAGTAAAATTAAATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATAtt                                                                                 <  2:4641740/148‑1 (MQ=255)
                                                                     aTTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTAAATGAATATTTAAAAATGAAAACGACATGAAACCGAAGCACAGAATCAACAATATCCAAAAATAAAATATTTc                                                                               >  1:2126754/1‑149 (MQ=255)
                                                                        gTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTTAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGt                                                                            >  2:4023899/1‑149 (MQ=255)
                                                                        gTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAATAATGATTTTATTATCGTAATTAAAATTAAATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAAACATAAAAAATTTACGt                                                                            >  2:3507067/1‑149 (MQ=255)
                                                                          tttgtgtgtgGCTAAATTGACTACCTTCGTTTTTTTGATTAATAATGATTTTATTATCTTAATTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTgg                                                                          <  1:370187/147‑1 (MQ=255)
                                                                           ttGTCTTTGGCTAATTTTACTACGTTCTTTTTTTTGATTATGATTTATTTTTTTATCTTAATTAAAATTAAATTAATTTTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGa                                                                         <  1:2790223/148‑1 (MQ=255)
                                                                             ctCTGTGGCGAAATTGACTACCTTCGTTTTTTTTATTTATAATGATTTTTTTATAGTAAATAAAAATACAATAATATTTAAAAATGAAAAAGACAAGAAAACGAACCACACAATAAAAATTATACAAAAAAAAAATATTTAAGTGGAGc                                                                       >  1:1074257/2‑149 (MQ=255)
                                                                              tCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTAAAAGAATATTTAAAAAGGAAAAAGACAAGAAACCGAATCACAAAAACAACAATATACAAACATAAAAAATTTAAGTTGAGCa                                                                      >  2:4792585/1‑149 (MQ=255)
                                                                                tgtgGCTAAATTGACTACCTTCGTTTTTTTGATTAATATTGTTTTTATTATCGTAAGTAAAATTACATGATTATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCAtt                                                                    <  2:3118085/149‑1 (MQ=255)
                                                                                       aaaTTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATTTTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTtattat                                                             <  2:1859205/149‑1 (MQ=255)
                                                                                       aaaTTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTtattat                                                             >  2:1256398/1‑149 (MQ=255)
                                                                                        aaTTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATTAAACCGAAGCACAGAATCAACATTCTCCAATAATAAAATATTTCCGTGGAGCATTTTattatt                                                            >  2:1614573/1‑149 (MQ=255)
                                                                                        aaTTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTAATATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTACAATCATAAAATATTTACGTGGAGCATTTTattatt                                                            >  2:2857254/1‑149 (MQ=255)
                                                                                         aTTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGAAATTAAAACGAAGCACATAAACAACATTATCCAATAATAAAATATTTAAGTGGATCATTTTattattt                                                           >  2:4949623/1‑148 (MQ=255)
                                                                                           tGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGaa                                                         <  2:4182834/149‑1 (MQ=255)
                                                                                            gACTACCTTCGTTTTTTTTATTAAGAATGATTTTATTATCGTAAGTTAAATTACATGAATATTTAAAAAAGAAAACGACATTAAAACGAACCACATAAAAAACATTAACAAAACAAAAAATAATTACGTTGAGAATTTTATTATTGAat                                                        >  2:199879/1‑149 (MQ=255)
                                                                                                   ttCTTTTTTTTTATTATTATTTTTTTTTTTATCGTAAGAAAAATTACATTAATATTTAAAAAGCAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAgg                                                 <  1:5041706/149‑1 (MQ=255)
                                                                                                    tctttttttttATTAATAATTATTTTATTATCGTAAGTAAAATTACATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGt                                                <  2:940098/146‑1 (MQ=255)
                                                                                                              taTTAATAATTATTTTATTATCTTAAGTAAAATTAAATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCgg                                      <  2:5187123/148‑1 (MQ=255)
                                                                                                               aTTAAGAATGATTTTATTAGCTTAATTAAAATTAAATGAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGt                                     <  2:4495373/149‑1 (MQ=255)
                                                                                                                ttAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTa                                    >  2:765333/1‑149 (MQ=255)
                                                                                                                ttAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTa                                    >  1:4851322/1‑149 (MQ=255)
                                                                                                                 tAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTaa                                   >  2:3448830/1‑149 (MQ=255)
                                                                                                                   aGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTaaaa                                 >  2:44211/1‑149 (MQ=255)
                                                                                                                     aaTTATTTTATTATCTTAATTAAAATTAAATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTaaaaaa                               <  2:4363637/149‑1 (MQ=255)
                                                                                                                     aaTGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTaaaaaa                               >  1:902311/1‑149 (MQ=255)
                                                                                                                      attaTTTTATTATCTTAATTAAAATTAAATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAAc                              <  2:3101930/146‑1 (MQ=255)
                                                                                                                       tGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACa                             >  2:2274956/1‑149 (MQ=255)
                                                                                                                         aTTTTATTATCGTAAGTAAATTTACTTTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACaaa                           <  2:808170/149‑1 (MQ=255)
                                                                                                                          ttttATTATCTTAATTAAAATTACTTGGATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAtag                          <  2:196044/149‑1 (MQ=255)
                                                                                                                           tttATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAaaga                         >  2:4314541/1‑149 (MQ=255)
                                                                                                                           tttATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAaaga                         >  2:522567/1‑149 (MQ=255)
                                                                                                                            ttattaTCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAaagaa                        >  2:3318385/1‑149 (MQ=255)
                                                                                                                                    ttaattaaAATTACATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGaa                <  2:3069982/148‑1 (MQ=255)
                                                                                                                                    ttaattaaAATTAAATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGaa                <  2:3070596/148‑1 (MQ=255)
                                                                                                                                    ttaagtaaAATTACATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGaa                <  2:141918/148‑1 (MQ=255)
                                                                                                                                       attaaAATTAAATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGc             <  1:2012741/147‑1 (MQ=255)
                                                                                                                                       agtaaAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGc             >  1:3352204/1‑149 (MQ=255)
                                                                                                                                        ttaaAATTAAATTAATATTTAAAATGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCa            <  2:1892438/148‑1 (MQ=255)
                                                                                                                                         taaAATTAAATTAATATTTAAAATGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAg           <  1:1275758/149‑1 (MQ=255)
                                                                                                                                          aaatTTACATGAATATTAAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAgg          <  1:1471764/149‑1 (MQ=255)
                                                                                                                                          aaaaTTACATGAATATTTAAAAAGGAAAACGACATGAAACAGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCAGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTTAATGAAgg          >  1:2615189/1‑149 (MQ=255)
                                                                                                                                           aatttACATTAATTTTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAggg         <  1:4018637/146‑1 (MQ=255)
                                                                                                                                           aaaTTACATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAggg         <  2:3239980/149‑1 (MQ=255)
                                                                                                                                             aTTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAGGGaa       >  1:1184322/1‑149 (MQ=255)
                                                                                                                                               taaaTGAATATTTAAAATGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAGGGaaaa     <  1:5198155/146‑1 (MQ=255)
                                                                                                                                                aCATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAGGGaaaaa    >  1:4600519/1‑149 (MQ=255)
                                                                                                                                                 cATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAGGGAAAaat   >  1:3205600/1‑149 (MQ=255)
                                                                                                                                                 cATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGAGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAGGGAAAaat   >  1:3206085/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTGAATGCAGGGAAAAATA  >  CP009273/234874‑235168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: