Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 68,486 T→G 22.0% L217V (TTG→GTG)  yabI → DedA family inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00927368,4860TG22.0% 543.4 / 88.6 259L217V (TTG→GTG) yabIDedA family inner membrane protein
Reads supporting (aligned to +/- strand):  ref base T (52/146);  new base G (59/2);  total (111/148)
Fisher's exact test for biased strand distribution p-value = 1.18e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 278 total aligned reads displayed.

TATTCCTGCCGGAATGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGAC  >  CP009273/68338‑68634
                                                                                                                                                    |                                                                                                                                                       
tatTCCTGCCGGAATGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGtt                                                                                                                                                         <  1:3862115/149‑1 (MQ=255)
  ttCCTGCCGGAATGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTttg                                                                                                                                                       >  2:2636448/1‑149 (MQ=255)
        ccGGAATGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTgtgtttttg                                                                                                                                                 >  1:3523323/1‑145 (MQ=255)
        ccGGAATGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTgg                                                                                                                                                 <  2:4150757/149‑1 (MQ=255)
          ggAATGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTGGCt                                                                                                                                               >  1:847946/1‑149 (MQ=255)
            aaTGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGGTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGa                                                                                                                                             >  1:3738325/1‑149 (MQ=255)
             aTGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGAc                                                                                                                                            <  1:3381701/149‑1 (MQ=255)
             aTGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTGGCTGAc                                                                                                                                            >  2:4156924/1‑149 (MQ=255)
               gCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTTGGTGTCGc                                                                                                                                          >  2:3888288/1‑149 (MQ=255)
               gCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTGTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTGGCTGACGc                                                                                                                                          >  2:3707969/1‑149 (MQ=255)
                  gagCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGGTGTGGCTGACGCCGt                                                                                                                                       >  2:160063/1‑149 (MQ=255)
                   agCGGTGAGTTTACATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGtt                                                                                                                                      <  2:5141499/149‑1 (MQ=255)
                      ggTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGGTTTTGGTGAAGCCggttgt                                                                                                                                   >  1:3653996/1‑144 (MQ=255)
                       gTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGAtt                                                                                                                                  <  2:2236686/149‑1 (MQ=255)
                       gTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTGGCTGACGCCGGTGGtt                                                                                                                                  >  2:3501807/1‑149 (MQ=255)
                         gAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTc                                                                                                                                <  2:2990882/149‑1 (MQ=255)
                           gTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTGTTTGTCCCGCGGTCGTTGGTGGTGGCTGACGCCGGTGttttatt                                                                                                                              >  2:1744673/1‑146 (MQ=255)
                           gTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTGGCTGTCGCCGTTGTTTtgtg                                                                                                                              >  2:2284934/1‑149 (MQ=255)
                             ttAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGGTGATTTCTTcc                                                                                                                            >  2:2057099/1‑149 (MQ=255)
                               aaaTGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTGGGTGTCGCCGTTGTTTtgtggcct                                                                                                                          >  2:549214/1‑145 (MQ=255)
                                aaTGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATc                                                                                                                         <  2:2132623/149‑1 (MQ=255)
                                  tGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCgg                                                                                                                       <  1:1494952/149‑1 (MQ=255)
                                   ggTTGCTGCGGGCAACAGCGGTGTTTTGGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTAGGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGc                                                                                                                      <  2:4900044/149‑1 (MQ=255)
                                    gTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCg                                                                                                                     <  1:3182063/149‑1 (MQ=255)
                                         tgctgGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGGGTTGTTGCTGTCGCCGTGTGTTTCTGCCAACGGCgtgggt                                                                                                               >  2:463966/1‑147 (MQ=255)
                                                aaCAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCCTCGGCGTGGTGGCGCtgg                                                                                                        >  2:3022876/1‑149 (MQ=255)
                                                aaCAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCtgg                                                                                                        <  2:5056150/149‑1 (MQ=255)
                                                aaCAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCtgg                                                                                                        <  2:2446899/149‑1 (MQ=255)
                                                aaCAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCtgg                                                                                                        <  1:1107949/149‑1 (MQ=255)
                                                 aCAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCtggt                                                                                                       <  1:3325224/149‑1 (MQ=255)
                                                   aGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTTTTGCTGAACCCGTTTAATTATTACAAAGGCGTGGTGGCGCtggtgg                                                                                                     >  1:4734986/1‑149 (MQ=255)
                                                    gCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTTGCTGACGCCGGTGATTTATGCCAACGGCGTGGTGGCGCTggtggt                                                                                                    >  1:1606735/1‑149 (MQ=255)
                                                       gtgtTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTTGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCAGGTGGTGtt                                                                                                 >  2:373229/1‑149 (MQ=255)
                                                        tgtTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTTTGGGTGTCGCCGTTGATTTATTCCAAAAGCGCTGGTGCGCCGGTGGTGTTa                                                                                                >  2:3922032/1‑149 (MQ=255)
                                                           ttttGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAAtt                                                                                             <  1:3709979/149‑1 (MQ=255)
                                                            tttGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTc                                                                                            <  2:3267854/149‑1 (MQ=255)
                                                              tgtgGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGc                                                                                          <  1:2124013/149‑1 (MQ=255)
                                                                   gTTGGTGTCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCAccc                                                                                     <  1:2280524/149‑1 (MQ=255)
                                                                     tggtggCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGt                                                                                   <  1:4630400/149‑1 (MQ=255)
                                                                      ggtggCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGtt                                                                                  <  1:666920/149‑1 (MQ=255)
                                                                      ggtggCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGtt                                                                                  <  2:2994117/149‑1 (MQ=255)
                                                                      ggtggCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGtt                                                                                  <  1:2830164/149‑1 (MQ=255)
                                                                        tggctggcTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGa                                                                                <  1:1506881/149‑1 (MQ=255)
                                                                        tggctggcTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGa                                                                                <  1:4222145/149‑1 (MQ=255)
                                                                        tggctggcTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTGGTTTTGGCTGACGCCGTTGATTTCTGCCATCCGCGTGGTTGCGCGGGTGGTGTTAAATAGCCAccccgtga                                                                                >  2:3224632/1‑144 (MQ=255)
                                                                         ggctggctGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGGGGTGTTGCTGTCGCCGGTGAGTTCTGCCAACGGCCTTGTGGGGCAGGTGGTGTTAAATCGCCAccccgtgaa                                                                               >  2:562975/1‑143 (MQ=255)
                                                                           ctggctgTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGc                                                                             <  1:75496/149‑1 (MQ=255)
                                                                             ggctgTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTTGTTTGGCTTACGCCGATTATTTATTCCATAGGCGTTGTGGCGCTTGTTGTGTTAATTAGCCACCCGTTGATGCCg                                                                           >  2:2156101/1‑149 (MQ=255)
                                                                             ggctgTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGTCGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCCCCCGTTGATGCCg                                                                           >  2:844748/1‑149 (MQ=255)
                                                                                  tgCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGGGTTGTGGGTGTCGCCCGTGTTTTATGGCAAAGGCGGGGGGGGGCGGGGGGTGGTTATTCGCCCCCCCATGATGCCgcgggt                                                                      >  1:4161300/1‑144 (MQ=255)
                                                                                   gCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGtat                                                                     <  1:4983450/149‑1 (MQ=255)
                                                                                    cgggCGGGTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGtata                                                                    <  2:4549469/147‑1 (MQ=255)
                                                                                    cTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGtata                                                                    <  1:106146/149‑1 (MQ=255)
                                                                                    cTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGtata                                                                    <  1:2229871/149‑1 (MQ=255)
                                                                                     tGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCGGACGCCGTGGTTTTCTGCCCGCCGCGTGGTGGCGCTGGTGGGGTTTATTCGCCACCCCTGTTTGCCGGGGTatat                                                                   >  2:1994763/1‑149 (MQ=255)
                                                                                       gCGGTTATGGCGCAGCGGTAAAGCGACTGACCGGGTGAGTCATGATTTGTCCCGCGGTCGTGTGGTGTGGGTGGCGCCGGGGATTTCTTCCCACGGCGTGGGGGCGCTGGTGGGGGTTATTCGCCACCCCGTGATGGCGGGGGATATCg                                                                 >  2:104521/1‑149 (MQ=255)
                                                                                           ttATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGatat                                                            <  2:1123531/149‑1 (MQ=255)
                                                                                           ttATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGatat                                                            <  2:3442012/149‑1 (MQ=255)
                                                                                            tATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATAtt                                                           <  1:185723/149‑1 (MQ=255)
                                                                                            tATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATAtt                                                           <  1:4486895/149‑1 (MQ=255)
                                                                                             aTGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATAttt                                                          <  2:3686165/149‑1 (MQ=255)
                                                                                             aTGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATAttt                                                          <  1:1274769/149‑1 (MQ=255)
                                                                                             aTGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATAttt                                                          <  1:3774312/149‑1 (MQ=255)
                                                                                             aTGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATAttt                                                          <  2:1563744/149‑1 (MQ=255)
                                                                                              tGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGGTGTGGCTGACGCCGTTGTTTTCTGCCATCCGCGTGGTGGCGCTGGGGGGGTTTATTAGCCCCCCCTTGATGCCGGTGTATATCGATAtttt                                                         >  2:1441169/1‑149 (MQ=255)
                                                                                              tGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTTTTGCTGGCGCCGGTGTTTTATTCCCTCGGCGTGGGGGCGCTGGGGGGGTTAATTAGCCCCCCCGTGTTGGCGGGGTATATAGATAtttt                                                         >  2:4396297/1‑149 (MQ=255)
                                                                                              tGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTTGCTGACGCCGGTTATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATAtttt                                                         >  2:4531422/1‑149 (MQ=255)
                                                                                              tGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTGGGGGACGCCGGTGATTTCTGCCCGCGGCGTGGTGGGGCTGGGGGTGTTTATTAGCCACCCCTTGAAGCCGGGGTATATCGATAtttt                                                         >  2:2619694/1‑149 (MQ=255)
                                                                                                       ggTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGt                                                <  1:2070691/149‑1 (MQ=255)
                                                                                                          aaaGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGt                                            <  2:697605/149‑1 (MQ=255)
                                                                                                                   gACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTTGCTGACGCCGTTGATTTCTGCCAAAGGCGTGGTTGCGCTGGTGGTGTTAAATCGCCACCCCTTGATTCCGGTGTATATAGATATTTTTCGTAAAGTGGTTGGTGTTTa                                   >  2:4710723/1‑149 (MQ=255)
                                                                                                                   gACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGAAGCCGTTGATTTAAGCCAACGGCGTGGTGGCGCTGGTTGTGTTAATTAGCCACCCCGTTATGCCGGTGTATATAGAAAATTTTCGGAAAATTGTTTGGGGttt                                    >  2:155487/1‑149 (MQ=255)
                                                                                                                   gACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTTGCTGACGCCGGTGTTTTATGCCATCGGCGTGGTGGCGCTTGTGGTGTTAATTATCCACCCCTTGATGCCGGTGGATATCGATATTTTGAGTAAAGTGGTTGTGGTTTa                                   >  2:5011530/1‑149 (MQ=255)
                                                                                                                   gACCGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTTGAATACCCCGGTGATTTATTACAACAGCGTGGTGGGGCTGGTGGTTTTAATTAACCACCCCATTAATCCGGTGTATAACGATATTTTTAGTAAACTGGGTTGGGGttt                                    >  2:3056546/1‑149 (MQ=255)
                                                                                                                      cGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGga                                <  1:4037005/149‑1 (MQ=255)
                                                                                                                      cGTTTGAGTCATTATTTGTCCCGCGGTCGTGTTTTTTGGCTGACCCCGTTTAATTAAGCCAACCCCCTGGTTGCGCAGGTGGTTTTAAATAGCCACCCCATGATTCCCGTGTAAAAAGAAAATTTTCGTAAAATGGTTGTGGTTTatta                                >  2:1878302/1‑146 (MQ=255)
                                                                                                                      cGTTTGAGTCATTATTTGTCCCGCGGTCGTGTGTTGTTGCTGACGCCCTTGATTTATTCCAAAGGCGTGGTGGCGCTGGTGGTGTTAAATAGCCACCCGTTGATGCCGGTGTATATAGATATTTTGAGTAAAGTGGTTTGGGGTTAGga                                >  2:3880180/1‑149 (MQ=255)
                                                                                                                        tttGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGgaga                              <  1:607265/149‑1 (MQ=255)
                                                                                                                         ttGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGAt                             <  1:3922032/149‑1 (MQ=255)
                                                                                                                         ttGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGAt                             <  2:4494495/149‑1 (MQ=255)
                                                                                                                            aGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGt                          <  1:4834725/149‑1 (MQ=255)
                                                                                                                              tCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCt                        <  2:4038773/149‑1 (MQ=255)
                                                                                                                              tCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCt                        <  2:1397939/149‑1 (MQ=255)
                                                                                                                              tCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCt                        <  2:3140616/149‑1 (MQ=255)
                                                                                                                               cATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCtt                       <  1:3561977/149‑1 (MQ=255)
                                                                                                                               cATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCtt                       <  1:514559/149‑1 (MQ=255)
                                                                                                                                attattTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTtg                      <  1:2808831/149‑1 (MQ=255)
                                                                                                                                attattTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTtg                      <  2:2521136/149‑1 (MQ=255)
                                                                                                                                 ttattTGTCCCGCGGTCGTTTGTTGTTGCTGACGCCGTTGATTTCTTCCAACGGCGTGGTGGCGCTGGTGGTGTTAAATAGCCCCCCGATTATTCCGGTGTATATCGATATTTTTCGTAAAGTGGTTTGGGTTTAGGATATAGTATtgt                     >  2:2903749/1‑149 (MQ=255)
                                                                                                                                 ttattTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTtgt                     <  2:421127/149‑1 (MQ=255)
                                                                                                                                            gcgGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCt          <  2:3656916/149‑1 (MQ=255)
                                                                                                                                            gcgGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCt          <  2:1843615/149‑1 (MQ=255)
                                                                                                                                                tCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATg      >  2:1025264/1‑149 (MQ=255)
                                                                                                                                                 cGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGc     >  1:2400249/1‑149 (MQ=255)
                                                                                                                                                  gTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCg    >  1:1182307/1‑149 (MQ=255)
                                                                                                                                                  gTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCg    >  2:826664/1‑149 (MQ=255)
                                                                                                                                                  gTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCg    >  2:4034874/1‑149 (MQ=255)
                                                                                                                                                   tttGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGa   >  2:2822053/1‑149 (MQ=255)
                                                                                                                                                   tttGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGa   >  1:4568612/1‑149 (MQ=255)
                                                                                                                                                    ttgttgTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGAc  >  2:4800124/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                       
TATTCCTGCCGGAATGCAGAGCGGTGAGTTTAAATGGTTGCTGCTGGCAACAGCGGTGTTTTTGTGGGTTGGTGGCTGGCTGTGCTGGCGGTTATGGCGCAGCGGTAAAGCGACTGACCGTTTGAGTCATTATTTGTCCCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGAC  >  CP009273/68338‑68634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: