Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,429,253 G→T 8.5% pseudogene (13/51 nt) ttcC ← pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,429,2530GT 8.5% 762.6 / 6.1 264pseudogene (13/51 nt)ttcCpseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base G (141/83);  new base T (2/37);  total (143/121)
Fisher's exact test for biased strand distribution p-value = 2.14e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 270 total aligned reads displayed.

GGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGA  >  CP009273/1429105‑1429401
                                                                                                                                                    |                                                                                                                                                    
ggcaaaaaaAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTg                                                                                                                                                      <  2:3167014/149‑1 (MQ=255)
ggcaaaaaaAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTg                                                                                                                                                      <  2:576068/149‑1 (MQ=255)
ggcaaaaaaAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTg                                                                                                                                                      <  2:576308/149‑1 (MQ=255)
  caaaaaaAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGAt                                                                                                                                                    <  1:1609298/149‑1 (MQ=255)
   aaaaaaaGAGTGGTTTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACTCATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCGCTTAATTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTGTTGAtt                                                                                                                                                   <  1:3973754/149‑1 (MQ=39)
   aaaaaaaGAGTGGATTATAGTAGCTTATTGTTGTCGCTGATGATATTTAAAACATTTAAAAATAAGTAAAATACTTATGAGTCAGATAGTTGTTATTTTTTCCCTTAATTGTTCAGGTTGTATTGTTATTTATTACTAATTTATTGAtt                                                                                                                                                   >  1:1009525/1‑149 (MQ=255)
        aaGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCg                                                                                                                                              >  1:1667758/1‑149 (MQ=255)
          gagTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCGTACTAATTTCTTGATTTTGCGAc                                                                                                                                            >  2:638106/1‑149 (MQ=255)
            gTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACAt                                                                                                                                          >  2:1579730/1‑149 (MQ=255)
             tGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACAtt                                                                                                                                         <  2:2389218/149‑1 (MQ=255)
              ggATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACAttt                                                                                                                                        >  2:3151574/1‑149 (MQ=255)
                  tATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTaaaa                                                                                                                                    <  2:429015/149‑1 (MQ=255)
                   aTCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACAAATTTCTTGATTTTGCGACATTTAAAAg                                                                                                                                   >  1:1455974/1‑149 (MQ=255)
                    tCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGc                                                                                                                                  >  2:3016378/1‑149 (MQ=255)
                    tCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGGAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGc                                                                                                                                  <  1:4415581/149‑1 (MQ=255)
                      gTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGa                                                                                                                                >  1:1951903/1‑149 (MQ=255)
                        aGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACt                                                                                                                              >  1:2085604/1‑149 (MQ=255)
                        aGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACt                                                                                                                              >  2:1467464/1‑149 (MQ=255)
                             aTTTTTGTCGCTTATGATATTTAACAAATTTAAAAATAAGTAAAATACTTATTAGTAAGAGAGTTGTTATTTTTGCCCTTATTTGTTCTGGTTTTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAAtt                                                                                                                         <  2:206146/149‑1 (MQ=255)
                              tttttgtCGCTTTTTATTTTTAAAAAATTTAAAAATAAGTAAAATAATTTTGTGTCAGTGTGTTTTTATTTTTGCCCTTACTTGTTCTGTTTTTATTTTTCTTTCTTACTATTTTCTTTATTTTGCGAAATTTAAAAGCGACTCAATTc                                                                                                                        <  1:2933814/146‑1 (MQ=255)
                                gttgtCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGt                                                                                                                      >  2:1792238/1‑149 (MQ=255)
                                gttgtCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGt                                                                                                                      >  2:4749721/1‑149 (MQ=255)
                                  tgtCGCTGATGATATTTAACACATTTAAAAATAAGTAAAATACTTATGAGTCTGATAGTTGTGATTTTTGCCCTTACTTGTTCTGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCTACATTTAAAAGCGACTCAATTCGTta                                                                                                                    <  2:3212063/149‑1 (MQ=255)
                                  tgtCGATGATTATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGTGAGTTTTGATTTTTGCCCTTACTTGTTCAGTTTGTATTGTTCTTTCTTACTAATTTATTGATTTTGCGACATTTAAAAGCGACTCAATTCGTta                                                                                                                    <  2:4556944/149‑1 (MQ=255)
                                      gCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATg                                                                                                                >  2:3949364/1‑149 (MQ=255)
                                       cTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACAGTTAAAAGCGACTCAATTCGTTATATgg                                                                                                               >  1:3029696/1‑149 (MQ=255)
                                          atgatATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAATCGACTCGATTCGTTATATTGCAt                                                                                                            >  1:4343648/1‑149 (MQ=255)
                                          atgatATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCAt                                                                                                            >  1:460722/1‑149 (MQ=255)
                                           tgatATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATc                                                                                                           >  1:2669887/1‑149 (MQ=255)
                                            gatATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCa                                                                                                          >  1:1005725/1‑149 (MQ=255)
                                              tatTTAAAACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCaga                                                                                                        <  2:1657480/149‑1 (MQ=255)
                                                 ttAACACATTGAAAAATAATTAAAATACTTTTGAGTCTGTGTGTTGTTTTTTTTGCCGTTACTTGTTCTGGTTTTTTTGTTGTTTCTTACTATTTTCTTTTTTTTGCGAATTTTAAACGCGACTCAATTCGTTATATGGCATCagaaga                                                                                                     <  1:2249343/149‑1 (MQ=255)
                                                  tAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag                                                                                                    >  1:437306/1‑149 (MQ=255)
                                                   aaCACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGt                                                                                                   >  2:2577220/1‑149 (MQ=255)
                                                     cacaTTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTAt                                                                                                 >  2:3415060/1‑149 (MQ=255)
                                                     caaaTTTAAAAATAATTAAAATACTTATTAGTATGTGATTTTTTTTTTTTGCCCTTACTTGTTCTGGTTGTATTGTTCTTTCTTACTAATTTCTTTATTTTGCGAAATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTAt                                                                                                 <  1:4113262/146‑1 (MQ=255)
                                                       caTTGAAAAATATGTAAAATACTTTTGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCTGGTTGTATTGTTCTTTCTTACTATTTTCTTGTTTTTGCGACATTTAAACGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGc                                                                                               <  1:426966/149‑1 (MQ=255)
                                                       caTTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGc                                                                                               >  2:2015114/1‑149 (MQ=255)
                                                         ttGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGt                                                                                             >  1:3209212/1‑149 (MQ=255)
                                                           gAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCa                                                                                           >  2:1709737/1‑149 (MQ=255)
                                                            aaaaaTAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCTGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCAt                                                                                          <  2:2357836/149‑1 (MQ=255)
                                                            aaaaaTAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCAt                                                                                          >  2:2813843/1‑149 (MQ=255)
                                                            aaaaaTAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCAt                                                                                          >  2:2298348/1‑149 (MQ=255)
                                                             aaaaTAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATg                                                                                         >  2:2172018/1‑149 (MQ=255)
                                                               aataatTAAATTACTTATGAGTCAGTGTGTTGTGATTTTTGCCCTTACTTGTTCTGGTTGTTTTGTTCTTTCTTACTATTTTCTTTTTTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGcc                                                                                       <  1:2745717/149‑1 (MQ=255)
                                                               aataatTAAAATATTTTTGAGTCAGATAGTTGTGTTTTTTGCCCTTACTTGTTCTGGTTTTTTTGTTCTTTCTTAATAATTTCTTTATTTTGCGAATTTTAAACGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGcc                                                                                       <  1:1440003/149‑1 (MQ=255)
                                                                   tgTAAAATACTTATGTGTCTGCGTGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTTTTGTTCTTTCTTCCTATTTTCTTGTTTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGaa                                                                                   <  2:512048/148‑1 (MQ=255)
                                                                    ttAAAATACTTATGATTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTATTTCTTACTAATTTCTTGATTTTGCGACTTTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAAc                                                                                  <  1:236001/148‑1 (MQ=255)
                                                                      aaaaTACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGc                                                                                <  2:805683/149‑1 (MQ=255)
                                                                       aaaTACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGcc                                                                               >  1:2506196/1‑149 (MQ=255)
                                                                         aTACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAAGTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCa                                                                             >  2:5019803/1‑149 (MQ=255)
                                                                             ttATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAt                                                                         >  2:2670426/1‑149 (MQ=255)
                                                                             ttATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAt                                                                         >  1:4115643/1‑149 (MQ=255)
                                                                               aTGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATaa                                                                       >  1:5041338/1‑149 (MQ=255)
                                                                                        agagTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTTATTTTGCTACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGa                                                              <  2:971739/149‑1 (MQ=255)
                                                                                            ttGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGAtata                                                          >  2:1221265/1‑149 (MQ=255)
                                                                                            ttGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGAtata                                                          >  1:673365/1‑149 (MQ=255)
                                                                                               ttaTTTTTGCCCTTACTTGTTCTGGTTTTATTTTTCTTTCTTACTAATTTCTTTATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaaa                                                       <  1:3393489/147‑1 (MQ=255)
                                                                                                  tttttGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAAc                                                    >  1:4452968/1‑149 (MQ=255)
                                                                                                    tttGCCCTTAGTTTTTCAGGTTGTATTGTTCTTTCTTTATAATTTCTTTATTTTGCGAAATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACtg                                                  <  2:708951/149‑1 (MQ=255)
                                                                                                     ttGCCCTTACTTGTTCTGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACtgt                                                 <  2:2776138/149‑1 (MQ=255)
                                                                                                         ccTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCg                                             >  2:3551755/1‑149 (MQ=255)
                                                                                                           ttACGTGTTCAGGTTGTATTGTGCTTTCTAACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCgtg                                           <  2:4276727/149‑1 (MQ=255)
                                                                                                              ctggTTCTGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCCACATTAAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTAt                                        <  2:4336604/146‑1 (MQ=255)
                                                                                                               ttGTTCAGGTTTTATTTTTATTTATTAATAATTTCTTGATTTTGCGAAATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATg                                       <  1:2008504/149‑1 (MQ=255)
                                                                                                                 gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGt                                     <  1:378184/149‑1 (MQ=255)
                                                                                                                  ttCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGAAATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTa                                    <  1:4550101/149‑1 (MQ=255)
                                                                                                                    cAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACg                                  >  1:2535718/1‑149 (MQ=255)
                                                                                                                     aGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACgg                                 >  1:4488584/1‑149 (MQ=255)
                                                                                                                     aGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTGGCGACATTTAAACGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACgg                                 <  1:2472760/149‑1 (MQ=255)
                                                                                                                      ggTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGa                                >  1:5098962/1‑149 (MQ=255)
                                                                                                                       gTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGAt                               >  1:4317612/1‑149 (MQ=255)
                                                                                                                         tttATTGTTCTTACTTACTAATTTCTTTATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTa                             <  1:3836572/147‑1 (MQ=255)
                                                                                                                          gTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTag                            >  1:3063246/1‑149 (MQ=255)
                                                                                                                            aTTGTTCTTTCTTACTAATTTCTTGATTTTGCTAAATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTagag                          <  1:1426171/149‑1 (MQ=255)
                                                                                                                            aTTGTTCTTTATCACTAATTTCTTGATTTTGCTACATTAAAACGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTagag                          <  2:3495182/149‑1 (MQ=255)
                                                                                                                               gTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAgggg                       >  2:766095/1‑149 (MQ=255)
                                                                                                                                ttctttctTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATCAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGa                      >  2:3630994/1‑149 (MQ=255)
                                                                                                                                ttctttctTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGa                      >  2:3746408/1‑149 (MQ=255)
                                                                                                                                ttctttctTACTAATTTCTTGATTTTGCGAAAATAAAACGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGa                      <  1:153600/149‑1 (MQ=255)
                                                                                                                                 tctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGaa                     >  2:1086077/1‑149 (MQ=255)
                                                                                                                                   tttcttAATAATTTATTTATTTTGCCACATTAAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGaaaa                   <  1:1383618/149‑1 (MQ=255)
                                                                                                                                     tcttACTAATTTCTTTATTTTGCGAAATTAAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATg                 <  1:2196825/149‑1 (MQ=255)
                                                                                                                                     aattACTAATTTATTTATTTTGCGAAATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATg                 <  1:2196052/147‑1 (MQ=255)
                                                                                                                                       ttccTATTTTCTTGATTTTGCGACATTTAACAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTc               <  1:3151574/146‑1 (MQ=255)
                                                                                                                                       ttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTc               >  1:3330191/1‑149 (MQ=255)
                                                                                                                                       ttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTc               >  1:2594902/1‑149 (MQ=255)
                                                                                                                                       ttACTAATTTCTTGATTTTGCGAAATTTAAACGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTc               <  1:4887583/149‑1 (MQ=255)
                                                                                                                                          cTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGc            <  2:4129501/149‑1 (MQ=255)
                                                                                                                                          cTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGc            >  2:2075003/1‑149 (MQ=255)
                                                                                                                                           tAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGca           <  1:4749721/149‑1 (MQ=255)
                                                                                                                                            aaTTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGcac          >  2:4266348/1‑149 (MQ=255)
                                                                                                                                             aTTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAACATGTCAGcaca         >  1:3507723/1‑149 (MQ=255)
                                                                                                                                             aTTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGcaca         <  2:4148920/149‑1 (MQ=255)
                                                                                                                                               ttCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACAtt       <  2:4398029/149‑1 (MQ=255)
                                                                                                                                                tCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGCTTAGAGGGGAAAATGTCAGCACAttt      >  2:4013552/1‑149 (MQ=255)
                                                                                                                                                tCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACAttt      <  2:5117258/149‑1 (MQ=255)
                                                                                                                                                 cTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTg     <  2:4277764/149‑1 (MQ=255)
                                                                                                                                                    gATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGa  >  2:1367793/1‑149 (MQ=255)
                                                                                                                                                    gATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGa  >  2:19086/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGA  >  CP009273/1429105‑1429401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: