| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,454,118 | A→T | 5.8% | I270F (ATT→TTT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,454,118 | 0 | A | T | 5.8% | 786.7 / 3.7 | 247 | I270F (ATT→TTT) | paaH | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (98/129); new base T (14/2); total (115/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.63e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 250 total aligned reads displayed.
TCGCGATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACGA > CP009273/1453970‑1454266 | gcgATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGAtt < 2:1544681/149‑1 (MQ=255) gcgATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAAATTAGCTGGTTGAACATGAACTGGTGAtt > 1:2040315/1‑149 (MQ=255) gcgATGGCGCTGGTGTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGAtt < 2:175374/149‑1 (MQ=255) gATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTTACATAGCGGGGGCAACACGAACAGGTGATtgg > 1:3786813/1‑149 (MQ=255) gATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATtgg < 2:3323097/149‑1 (MQ=255) gATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCGGGTGCAACAGGAACTGGGGATtgg > 2:1510895/1‑149 (MQ=255) aTGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATtggt < 2:513664/149‑1 (MQ=255) aTGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATtggt < 1:496267/149‑1 (MQ=255) aTGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATtggt < 1:3984228/149‑1 (MQ=255) aTGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATtggt < 1:3444811/149‑1 (MQ=255) gcgcTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGa < 2:47397/149‑1 (MQ=255) tGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGt < 2:4473168/149‑1 (MQ=255) tCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACATACCAGGTGCCACAAGGACTGGTGATTTGTGGA‑CGGTTgggg > 2:544285/1‑148 (MQ=255) ccGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCaa > 2:810172/1‑149 (MQ=255) cGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTTACATCGCAGGTGCAACAAGAAAAGGTGTTTTGGGGT‑CGGGTGGGGAAg > 1:3181683/1‑149 (MQ=255) gATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGa < 2:4983935/149‑1 (MQ=255) gATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGa < 1:1651200/149‑1 (MQ=255) tGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTTACATATCGGGTGGAAAACGCACAGGTGATTTGTGGG‑CGGTTggggcataaa > 2:886205/1‑142 (MQ=255) ggggCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCATAACAGGTGCAAAAGGAACTGGTGATTTGTGGA‑AGGTTGGGCCAGaaaa > 2:2681016/1‑149 (MQ=255) gggCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTTACATCGCTGGTGCAACAGGAACAGGTGTTTGGGGGA‑CGGTTGGGCCAGAAAAg > 2:1571115/1‑149 (MQ=255) gggCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAg < 1:2876289/149‑1 (MQ=255) gggCCGCTGGAATTAAACGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTATGGCAGGAGCGTCGTTTTTTTAATTAGCTGGGGGCACAGGGACTGGTGTTTTGGGGT‑CGGTTTGGGCAGaaaaa > 1:3271553/1‑148 (MQ=255) ggCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGt < 1:1239459/149‑1 (MQ=255) cGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGtggg < 2:1074491/149‑1 (MQ=255) gCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTAGCTGGTGCAACAGGAACTGGTGTTTGGTGGA‑CGGTTGGGGAATAAAAGtgggc > 2:4559239/1‑149 (MQ=255) tGGACTTAACCGCTCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGtgggctg < 2:3640096/149‑1 (MQ=255) ggAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGtgggctgg < 1:965166/149‑1 (MQ=255) ggAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCATCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGtgggctgg > 2:4188386/1‑149 (MQ=255) aaTTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTTACTTAGGTGGTGCAACAGGAAATTGTGGTTTGTGGA‑CGGTTGGGGAAGTAAAGtggggtgggc > 2:4002205/1‑149 (MQ=255) ttAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTTACGCTTTCTGGAAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCgt < 2:2003347/149‑1 (MQ=255) ttAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCgt < 2:3057817/149‑1 (MQ=255) ttAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTAGCTGGTGCAACAGGAACAGGGGATTTGTGGA‑CGGTTGGGGAAGAAAAGTGGGCTGGGCgt > 1:2303760/1‑149 (MQ=255) tAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCgtg < 1:2959710/149‑1 (MQ=255) aaCCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCgtgt > 2:2855292/1‑149 (MQ=255) aaCCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCgtgt < 1:4867394/149‑1 (MQ=255) aCCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTa < 2:1694329/149‑1 (MQ=255) tGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTgg < 2:4268673/149‑1 (MQ=255) ttGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGgcgc < 1:3234246/149‑1 (MQ=255) ttGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTAACATATCGGGTGCAAAAGGCACAGGGGATTTGTGGT‑CCGTTTGGCAAGAAAAATGGGCCGGGCGTGTACGACAGgcgc > 1:4527458/1‑149 (MQ=255) aGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGaa < 2:2953915/149‑1 (MQ=255) gACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCATCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACg > 2:4620379/1‑149 (MQ=255) gACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTAGCTGGTGCAACAGGAACAGGTGATTGGTTGA‑AGGTTGGGCAAAAAAATTGGGCTGGGCGTGTACGACTGGCGCGCGGAACg > 2:122665/1‑149 (MQ=255) tCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTTACTTAGCTGGTGCAAAAGGAACTGGTGTTTTGTGGACCGGTTGGG‑AAGAAAAATTGGCTGGGCGGGTACGACCGGCGCGCGGaaactgat > 1:718813/1‑143 (MQ=255) aaTTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGc < 1:601232/149‑1 (MQ=255) aaTTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACATCGCTGGTGCAACAGGAACTGGTGAATGGTGGA‑CGGTTGGGCAAGAAAAGTGTGCTGGGCGTGTACGACAGGCGCGCGGAACGTGAGGc > 2:3412309/1‑149 (MQ=255) aTTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCCAGAAAATTGGGCTGGGCGTGTAAGACTGGCGCGCGGAACGTGAGGCa > 2:2476743/1‑149 (MQ=255) ttttGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAg < 1:4106369/149‑1 (MQ=255) tGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAgttg < 2:1406593/149‑1 (MQ=255) cTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAgttgtt < 2:1612012/149‑1 (MQ=255) cTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAgttgtt < 2:96120/149‑1 (MQ=255) tGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTAGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGttgttg > 2:3230871/1‑149 (MQ=255) gTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTgg < 1:535411/149‑1 (MQ=255) cTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTgg < 1:4428334/149‑1 (MQ=255) gTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGaa < 2:4610472/149‑1 (MQ=255) ttCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAg < 2:3794764/149‑1 (MQ=255) ttCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAg > 2:2761948/1‑149 (MQ=255) tCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTACCTTCGCGGGTGCAACAGGAACAGGTGATTGGTGGT‑CGGTTGGGGAAGTAAAGTGGGCTGGGCGTGTAAGACTGGCGCGCGGAACGTGAGGAAGTTGTTGGCCTGGAAGc > 2:3106321/1‑149 (MQ=255) gtgtTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGt < 1:2627702/149‑1 (MQ=255) gtgtTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGt < 1:304482/149‑1 (MQ=255) gtTTAACGCTGTCGGGCAGGAGCGTCGTTTTTTCCCTTCGCTGGTGCAACAGGAACTGGTGTTTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTaa < 1:4369400/149‑1 (MQ=255) ttAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGTTTGGTGGT‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGc > 2:385822/1‑149 (MQ=255) ttAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGGGATTGGTGGG‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGGACGTGAGGCAGTTGTTTGCCTGGAAGCGGTAAGc > 2:756176/1‑149 (MQ=255) tAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCg < 1:4139057/149‑1 (MQ=255) aaCGCTTTCTGGCAGGAGCGTCGTTTTTTACCATCGCGGGGGCAACAGGGACTGGTGATTGGTGGG‑CGGTTGGGCAAGAAAAGTGGGCTTGGGGGGTACGACGGGCGCGCGGAACCTTAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGa > 2:119473/1‑149 (MQ=255) cTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGt < 1:734876/149‑1 (MQ=255) tttCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGtt < 2:4717199/149‑1 (MQ=255) ttCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGttt < 1:1829722/149‑1 (MQ=255) gCAGGAGCGTCGTTTTTTACCATAGCTGGTGCAACAGGAACTGGGGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCACTTGTTGGCCTGGAAGCCGTAAGCGACAGTTTTATcc > 2:2663238/1‑149 (MQ=255) cAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGccc < 2:3965147/149‑1 (MQ=255) gCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGa < 1:135977/149‑1 (MQ=255) gCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGa < 1:2544698/149‑1 (MQ=255) cgtcgtTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGaa < 1:848831/149‑1 (MQ=255) gtcgtTTTTTAACATAGCTGGTGCAACAGGAACAGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACAGGCGCGCGGAACCTGAGGCAGTTGTTGGCCGGGAAGCGGTAAGCGACACTTTTAGCCCAAAGaaa > 1:2085116/1‑149 (MQ=255) cgtTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGt < 1:3320408/149‑1 (MQ=255) ttttACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaa > 2:2997690/1‑149 (MQ=255) tttACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaaa > 1:4658763/1‑149 (MQ=255) aCCTGCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaaaaga < 2:1463828/149‑1 (MQ=255) ccTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaaaagaa < 1:3133924/149‑1 (MQ=255) ccTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaaaagaa < 2:778752/149‑1 (MQ=255) cTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCACTGAAAGTagaaaagaaa > 2:3695778/1‑149 (MQ=255) cTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaaaagaaa > 2:940601/1‑149 (MQ=255) cGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGt < 2:1390865/149‑1 (MQ=255) gCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTg < 2:2590988/149‑1 (MQ=255) tGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGAc < 1:1388080/149‑1 (MQ=255) ggTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACg > 1:1768773/1‑149 (MQ=255) ggTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACg > 1:170184/1‑149 (MQ=255) gCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGgtg > 1:2796048/1‑149 (MQ=255) gCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGgtg < 2:1957416/149‑1 (MQ=255) aCAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCa < 2:844716/149‑1 (MQ=255) ctggAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCAc < 1:2249042/147‑1 (MQ=255) aGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACg > 2:299373/1‑149 (MQ=255) aGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACg > 2:2067332/1‑149 (MQ=255) ggAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACgg > 2:2542181/1‑149 (MQ=255) gAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGa < 1:1572469/149‑1 (MQ=255) gAACTGGTGATTGGTGGA‑CGGTTGGGAAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGa < 1:4188386/149‑1 (MQ=255) cTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAAt < 2:1144060/149‑1 (MQ=255) tGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAAtt > 1:3835956/1‑149 (MQ=255) ggTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTg > 1:1934865/1‑149 (MQ=255) gTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGa < 2:2297041/149‑1 (MQ=255) gTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGa > 1:1103991/1‑149 (MQ=255) | TCGCGATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGTGGA‑CGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACGA > CP009273/1453970‑1454266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |