| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,068,168 | T→G | 6.4% | intergenic (+29/‑92) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,068,168 | 0 | T | G | 6.4% | 744.2 / 4.8 | 288 | intergenic (+29/‑92) | flu/yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (133/115); new base G (25/2); total (158/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.02e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 298 total aligned reads displayed.
TGGAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCATTCTTCG > CP009273/2068021‑2068315 | tGGAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGtc > 1:1475025/1‑149 (MQ=255)tGGAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGtc > 1:4092551/1‑149 (MQ=255) ggAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGtca < 1:170529/149‑1 (MQ=255) gAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAGTGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGtcat > 1:2426699/1‑149 (MQ=255) gAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGtcat > 2:3541666/1‑149 (MQ=255) gCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTcatcat > 1:1129269/1‑149 (MQ=255) gCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTcatcat < 2:3630126/149‑1 (MQ=255) ccGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGa > 2:111057/1‑149 (MQ=255) cGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGAc < 2:4677703/149‑1 (MQ=255) cGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGAc < 1:1609548/149‑1 (MQ=255) gtCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCgg > 2:3374773/1‑149 (MQ=255) gtCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCgg > 2:2088331/1‑149 (MQ=255) ccGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑a < 2:4265568/149‑1 (MQ=255) gggAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑Acc < 2:1855982/149‑1 (MQ=255) gggAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGGCCTCATGACCGGG‑Acc > 1:2877169/1‑149 (MQ=255) ggAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTGCCCGGCAACAAGACCCGG‑cccc > 1:4779354/1‑149 (MQ=255) ggAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑Accc > 1:1698491/1‑149 (MQ=255) aaaTATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGGGCTCATGACCCGG‑CCCCCGa > 1:1726192/1‑149 (MQ=255) aaTATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGGCCTCATGACCGGG‑TCCCGGAc > 1:4438054/1‑149 (MQ=255) aaTATCACCCTGGGCGTTCAGGCCGGTTAGGCCCACAGCGTCAGCGGCAGCCGCGCTTAAGGGTATAACGGTCAGGCAACACTGAATGTGACATTCTTACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGAc < 2:2854871/149‑1 (MQ=255) atCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCgg > 2:3271180/1‑149 (MQ=255) tCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGgc > 2:1379023/1‑149 (MQ=255) cTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAAc < 2:5154133/149‑1 (MQ=255) gggCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACgg > 2:509491/1‑149 (MQ=255) ttCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCtt > 2:1271795/1‑149 (MQ=255) ttCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCtt > 2:2653766/1‑149 (MQ=255) ttCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATACTGACCGGG‑ACCCGGACCGGCGCCAccgctatt > 1:2479002/1‑142 (MQ=255) ggTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCca > 2:5051802/1‑149 (MQ=255) gTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCcac > 1:1987422/1‑149 (MQ=255) ttATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCCACGGCTCTTCAACGCcaca > 1:2201289/1‑149 (MQ=255) cacaGCGTCAGCGGCAGCAGCGCTTATGGTTATAACGTTCTGGCCACACTTATTGTCACCTTCTCACATAACCATCGCCTCTCTGTGGCCCCGTAAATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTg < 1:2940309/149‑1 (MQ=255) cacaGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTAAACGCCACATTCGCTg > 1:3376856/1‑149 (MQ=255) accgCGTCCGGGGCTGCCGCGTGGATGGTTATAAGGGTCAGGCAACCATGATTGTGACCTTCTCACACAACAATCGCCTCTCTGTGGTCCCGTAAATCATGACCGGC‑CCCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTgg < 2:1726091/146‑1 (MQ=255) acaGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTgg > 1:2548916/1‑149 (MQ=255) acaGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGGCCTCATGACCGGG‑ACCCGGACCGGCGCACCGGATCTTCCACGCCCCAATCGCggg > 1:1903132/1‑149 (MQ=255) tCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTGATCATGACCGGG‑ACCCCGACCGGCGCAACGGATCTTCAAAGCCACAATCGCTGGCATTaa > 1:92963/1‑149 (MQ=255) tCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACAATCGCTGGCATTaa > 1:5042881/1‑149 (MQ=255) tCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGGCATCATGAACGGG‑ACCCCGACCGGCGCAACGGATCTTCAAAGCCACAATAGCTGGCAATaa > 1:2316641/1‑149 (MQ=255) gCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCCTGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCAATAACaa > 2:2611644/1‑149 (MQ=255) gctgcagcGCTTATGGTTATAAGGGTCAGGCCACACTTAATGTGACATTCTGACAGAACCACCGCCTCTCTGTGGTCCCGGTCATCATGACGGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATaa < 2:959557/146‑1 (MQ=255) ctgctgcgcTGATGGGTATAAGGGTCTGGCCACACTGAAGGTGACCTTCTGACAGACCCAGCGCCTCTCTGTGGTCCGGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAAc < 2:3155066/144‑1 (MQ=255) gcagcGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCAACAAGAACGGG‑ACCCGGCCCCGCGCAACGGAAAAACAACGCCACAAACGCAGGCAATaaaaaaaaaaa > 1:1462498/1‑146 (MQ=255) cagcGGTGAAGGGTATAACGGTCAGGCCAAACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATg < 2:2256221/149‑1 (MQ=255) gcTGATGGGTATACCGGTCAGGCCACACTGAATGTGACATTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGAAATCATGACGGGC‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGatat < 2:4012785/149‑1 (MQ=255) gcTGAAGGGTATAAGGGTCAGGCCACACTGAATGTGACATTCTGACAGAACCAGCGCCACTCTGTGGTCCCGGTCATCATCACCGGT‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGatat < 1:2100523/149‑1 (MQ=255) gcTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGGCAACAAGACCGGG‑GCCCCGACCGGCGCCACCGATCATCAACGCCACAATAGCTGGCCTTAACAAAAAAAAGataa > 1:1346433/1‑148 (MQ=255) tGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATAATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTAAACGCCACAATAGCTGGCATTAACAATAAAATTATAtta > 1:2826220/1‑148 (MQ=255) gatggttataAGGGTCCGGCCACACTGATTGTGCCCTTCTGACAGACCCATCGCCTCTGTGTGGTCCGGTTCATCTTGACGGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATtca < 2:1331558/143‑1 (MQ=255) gacgggTATACCGGTCTGGCCACAGTGAATGTGACCTTCTGACATAACCATCGCCTCTCTGTGGTCCCGTTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATtca < 2:651102/146‑1 (MQ=255) taACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAAAGCCACATTAGCTGGCATTAACAATAAAATGATATTAATAACGGAg > 1:326384/1‑149 (MQ=255) tggttctggCCACACTTATTGTGTCCTTGTGACATAACCATCGCCTCTCTGTGGGCCGGTTAATAATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTg < 1:3770742/142‑1 (MQ=255) aCGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCCTCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTg > 2:1484842/1‑149 (MQ=255) aCGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTg < 2:2054405/149‑1 (MQ=255) ggTCTGGCCACACTGAATGTGACCTTCTGACAGAACCTTCGCCTCTCGGTGGTCCCGGTCTTCTTGTCCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGAc < 2:5018036/149‑1 (MQ=255) ggTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGAc < 2:2460902/149‑1 (MQ=255) tCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGTTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTa < 2:3673064/149‑1 (MQ=255) aGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCCTTAACAATAACATGATATTCATCACGGAGTGACTATg > 2:146239/1‑149 (MQ=255) aGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGAGTATg > 1:1262246/1‑149 (MQ=255) ggCCACACTGAATGGGACCTTCTGCCAGACCCATCGCCTCTCTGTGGTCCCGGTCATCATGACGGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGt < 2:2170443/149‑1 (MQ=255) gCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTGATCATGACCGGG‑ACCCCGACCGGCGCAACCGATCGTCAAACCCACAATCGCTGGCATTAAAAAAAAAAATATATTGATCACGGGGTGACTATGtt > 1:4388823/1‑149 (MQ=255) ccaaaacTGAATTTGACCTTCTCAAATAACAATCGCCTATCTGTGGTCCCGTTAAACTTGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGtt < 1:5073443/144‑1 (MQ=255) ccACACTGAAGGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTa < 2:4926340/149‑1 (MQ=255) cacTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCCGGCATCATGACCCGG‑ACCCCGACCGGCGCCACCGAGAGTAAACCCCCCAATCGCTGGCAATAACAAAAACAAGATATTCAAAACGGAGTGACTATGTTACAg > 1:4913048/1‑149 (MQ=255) tgtGATTGTGACTTTCTGACAGACCCCTCGCCTCTGTGGGGGCCGGGTCATCTTGCCGGGG‑CCCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGa < 1:2692410/147‑1 (MQ=255) acTGATTGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCGTGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGa < 2:4217724/149‑1 (MQ=255) acTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGGGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGa < 2:1025408/149‑1 (MQ=255) cTGAATGTGACCTTCTGACCGAACCATCGCCTCTCTGTGGTCCCGGTCATCAGGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGAt < 2:194960/149‑1 (MQ=255) tattgtgACCTTCTGACAGAACCAGCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAg < 1:5120327/146‑1 (MQ=255) attgtgACGTTGTGACAGAACCATCGCCTCTGTGTGGTCCCGGACATCATGCCGGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGt < 1:738247/147‑1 (MQ=255) aaTGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAAAGGATCTTCAACGCCACATTCGCTGGCATTAAAAATAACATGATATTAATCACGGAGTGACTATGTTACAGAtttt > 1:4657759/1‑146 (MQ=255) aTGTGACCTTCTGACCGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTc < 2:4718814/149‑1 (MQ=255) aTGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTc < 2:3648969/149‑1 (MQ=255) aTGTGACCTTCTGACAGAACCATCGACTCTCTGTGGTCCCGTTAATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTc < 2:3801739/149‑1 (MQ=255) tgACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCATGGAGTGACTATGTTACAGATAGTCGgc > 2:3025833/1‑149 (MQ=255) ttCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATTACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCAACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCt > 2:3264986/1‑149 (MQ=255) ttCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGCCTATGTTACAGATAGTCGGCGCGCt > 2:4748245/1‑149 (MQ=255) cTGAAAGAACCAGCGCCTCTGGGTGGCCCGGGTCATC‑TGGCCGGGCACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGa < 1:2669315/149‑1 (MQ=255) tGACAGAACCATCGCCTCTCTGTGGTCCCGGGCATCATGACCGGG‑ACCCCGACCCGCGCAACGGATCTTCAACGCCACATTAGCTGGCATTAACAAAAAAATGATATTCAACACGGAGTGACGATGTTACAGATAGTCGGCGCGCTGAt > 1:1182996/1‑149 (MQ=255) gACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATc < 2:121586/149‑1 (MQ=255) aCAGAACCCGCGCCTCTCTGTGGTCCCGGTATTCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATcc < 2:3928917/149‑1 (MQ=255) cAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCct < 2:862858/149‑1 (MQ=255) cAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCct < 2:2359148/149‑1 (MQ=255) cAGAACCATCGCCTCTCTGTGGGCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCct < 2:2741785/149‑1 (MQ=255) aGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCctg > 2:2884670/1‑149 (MQ=255) gAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCctgc > 2:1693416/1‑149 (MQ=255) gAACCATCGCCTATCTGTGGTCCCGGACATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCctgc < 1:833581/149‑1 (MQ=255) aCCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCctgctg > 2:436889/1‑149 (MQ=255) ccATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGa > 2:4668868/1‑149 (MQ=255) cGCCTCTCTGTGGCCCCGCTCAACATGACCGGG‑CCCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGc < 1:200788/149‑1 (MQ=255) ctttgtgGTCCCGCACATCAGCCCCGGC‑CCCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGAt < 1:3468104/146‑1 (MQ=255) ctctGTGGTCCGGTTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGAt < 1:3735316/149‑1 (MQ=255) ctctGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGAt < 2:1543303/149‑1 (MQ=255) tctGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGAtt < 2:4576564/149‑1 (MQ=255) tctGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGAtt < 2:2401632/149‑1 (MQ=255) ctGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAAAATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGAttt > 2:672030/1‑149 (MQ=255) gtgGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGc > 1:2580107/1‑149 (MQ=255) tgGTCCCTGTCATCATGACCGGG‑ACCCGGTCCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGcc < 2:805602/149‑1 (MQ=255) tCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCAtt > 1:1650864/1‑149 (MQ=255) cccGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGAGTATGTTACAGTTAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCAttc > 1:2073381/1‑149 (MQ=255) cGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCAttctt < 2:4155045/149‑1 (MQ=255) | TGGAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGG‑ACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCATTCTTCG > CP009273/2068021‑2068315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |