| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,713 | C→A | 21.1% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,713 | 0 | C | A | 21.1% | 550.6 / 30.0 | 257 | intergenic (‑30/+278) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base C (53/128); new base A (48/13); total (116/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.70e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 263 total aligned reads displayed.
TTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCG > CP009273/2170565‑2170861 | ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTc < 1:904596/149‑1 (MQ=255)ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTc < 2:3452914/149‑1 (MQ=255)ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTc < 1:1846058/149‑1 (MQ=255) gCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCaaa < 2:736786/149‑1 (MQ=255) cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCaaaa < 1:2673418/149‑1 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCG‑ATTTAAAAat > 2:3828025/1‑149 (MQ=255) gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAat‑a < 1:3046852/149‑1 (MQ=255) gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTAAAAat‑a > 2:131833/1‑149 (MQ=255) cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAat‑at < 1:340202/149‑1 (MQ=255) gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATaa < 2:1687570/149‑1 (MQ=255) gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCG‑CTTTCAAAAA‑ATaa > 2:3211656/1‑149 (MQ=255) gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GGGTTTTGG‑GTTTTAAAAA‑ATaa > 1:3653608/1‑149 (MQ=255) gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GGGTGTTTT‑TTTTGAAAAT‑ATaa > 1:1280837/1‑149 (MQ=255) tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAAt < 1:4438969/149‑1 (MQ=255) tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAAt < 2:3731901/149‑1 (MQ=255) ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATg < 2:888112/149‑1 (MQ=255) ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATg < 2:1044139/149‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGa < 2:2722688/149‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGa < 2:3742332/149‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGaa < 2:3323187/149‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGaaa < 2:3595155/149‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGaaa < 1:4354402/149‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAat < 1:2682991/149‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAat < 1:996134/149‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCG‑AATTGAAAAT‑ATAAAGAAat > 2:4388402/1‑149 (MQ=255) ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTTG‑ATTTAAAAAA‑ATAATTAAat‑t > 2:1752002/1‑149 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAG‑AGTTATAAAT‑AAAATTAAAT‑TAttt > 1:1133376/1‑149 (MQ=255) acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGTAAT‑TATTTg < 2:3058861/149‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAT‑ATATCAAAAA‑AAAAAGAAAA‑TAATTGt > 1:1106821/1‑149 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGtt < 1:4143721/149‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGtttt < 2:584740/149‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGttttt < 1:803564/149‑1 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTGTTTT‑G‑ATTTAAAAAA‑ATAATTAAAA‑TATATTTTTTTa > 1:4966693/1‑149 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTa < 1:3890370/149‑1 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTAAAAAA‑ATAATTAAAA‑TATttttttttt > 1:769370/1‑148 (MQ=255) tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAG‑ATTTAAAAAT‑ATAAATAAAT‑TAATTTTTTTTaa > 2:4624026/1‑149 (MQ=255) tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTAAAAAT‑ATAAATAAAT‑TAATTTTTTTTaa > 2:2947166/1‑149 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAata < 2:1084320/149‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTAAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCgag > 2:431607/1‑149 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑AATTCAAAAT‑ATAAATAAAA‑TATTTTTTTTTTAatatagtg > 2:1451094/1‑145 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGG‑ATTTAAAAAA‑ATAATTAAAT‑TATTTTTTTTTTAATATagag > 2:4788686/1‑149 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCgaga < 1:2640763/149‑1 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTGTTTTTAAAAAA‑AAAAATAAATATATTTTTTTTTatatataaa > 1:3062224/1‑146 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCT‑ATTTCAAAAT‑ATAATGAAAT‑TATTTTTTTTTAAATATAgaga > 2:718625/1‑149 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATa < 2:3569042/149‑1 (MQ=255) tgtgAATATCGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATaa < 2:4742796/149‑1 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAAc < 2:169658/149‑1 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATAGAGGTAACg > 2:3799213/1‑149 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGa < 2:2074377/149‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAt < 2:4076970/149‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑c < 1:4515834/149‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑c < 2:3623930/149‑1 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑cac < 1:4704468/149‑1 (MQ=255) ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTAAAAAA‑ATAAATAAAA‑TATTTTTTTTTATATATCGAGATAAAGAT‑aaca > 1:5186311/1‑149 (MQ=255) aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTG‑ATTTTAAAAT‑ATAATTAAAA‑TATTTTTTTTTTAATATAGAGATAACGAT‑AACaaaa > 2:3927907/1‑149 (MQ=255) cGGAACCGCATAACCGCCGCGCTGTGCGTTTTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCT‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGAc < 2:2974745/149‑1 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGG‑ATTTAAAAAT‑ATAAATAAAA‑TAATTTTTTTTTAATATAGAGGTAAAGAA‑AACaaaaaaaaaa > 1:2056954/1‑144 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTTTTTTTATATATAGAGATAAAGAT‑CACAAAAACGACaa > 2:4877608/1‑149 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTAAAAAA‑ATAAATAAAT‑TATTTTTTTTTTTATATTGAGATAAAGAT‑CACAAAAACCACaa > 2:4003476/1‑149 (MQ=255) gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTG‑ATTTGAAAAT‑AAAAAGAAAA‑TATTTTTTTTTTAATATAGAGATAAAGAT‑AAACAAAACGACAAAATGa > 1:1202034/1‑149 (MQ=255) tAACCGCCGGGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCCCGTACATTTTAATATCCTGTCGT‑TTGTTTTCT‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGaaaa < 2:3368023/149‑1 (MQ=255) ccgccgCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTAAAAAA‑ATAAAGAAAT‑TATTTTTTTTTAAATAACGAGATAACCAA‑AACAAAAACGACAATATGAAAatta > 2:2532941/1‑149 (MQ=255) ccgccgCGCTGTGCGTTGTTCAGCATCTGATTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAatta < 2:407416/149‑1 (MQ=255) gcgcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTT‑TTTTTAAAAA‑AAAAATAAAT‑TATTTTTTTTTTAAAATATATATAAAAAA‑AACAAAAAACACAAAAATAAAAATATTGga > 1:4889219/1‑149 (MQ=255) gcTGTGCGTTGTTCCGCATCTGCTTTGTCGATACCCCGAACATTTTCATATCCTTTCGT‑TTGTTTTCG‑ATTAAAAAAT‑ATAATTAAAT‑TATTTTTTTTTAAATATCGAGATACCGAA‑CACAAACACGACAATATGAAAATTATTCgagg < 1:2508777/149‑1 (MQ=255) gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTTTTTTTAAATATCGAGATAACGAT‑CACAAAAAAGCCAATATGTAAATTATTAgagg > 2:5136293/1‑149 (MQ=255) gttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑AATTAAAAAA‑ATAAAGAAAT‑TATTTTTTTTTAAATATAGAGATAACGAT‑AAAAAAAACGAAAAAATTAAAATTATTAGAGGAGTGaaa > 2:2857427/1‑149 (MQ=255) gttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTT‑TTTTAAAAATAAAAATAAAAT‑AATTTTTTTTTAAA‑AAATAGATAAAAAA‑AAAAAAAAAGACAATAATAAAATTATTAGAAGAGttgta > 1:1583049/1‑145 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTTTTTTGT‑TTTTAAAAAA‑ATAATTAAAA‑TTTTTTTTTTTTAATATAGGGATTAACAA‑CACAAAAACCACAAAAATTAAATTAATAGAGGAGTGTAAGGGcaaaaaa > 2:3492374/1‑149 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTAATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATTAAAT‑TATTTGTTTTTAAATATCGATATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaaa < 2:2792899/149‑1 (MQ=255) cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTCG‑ATTTAAAAAT‑ATAATTAAAA‑TATTTGTTTTTAAATATAGAGATAACGAA‑CACAAAAAAGACAAAATGAAAATTATTAGAGGGGTGAAATGCAAAAAAAca > 2:2024180/1‑148 (MQ=255) tGTCTATACCACTTAAATTTTCATATCCTGTCGT‑TTTTTTTCT‑TTTTCAAATT‑ATAATTAAAT‑TTTTTTTTTTTAATTTTCTTTAAAACGAT‑AACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTcc < 2:2181645/149‑1 (MQ=255) tACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGG‑ATTTAAAAAA‑AAAAATAAAA‑TATTTTTTTTTAAATAAAGAGATAAACAA‑AACAAAAACCACACAAAGAAAAAAAATAGAGGCGGGGAAGGCAAAAAAACCGCCAcccccaag > 1:3370571/1‑144 (MQ=255) ccACGTAAATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAggg < 2:4577850/149‑1 (MQ=255) aCGTACATTTTCATATCCTGTCGT‑TTTTTTTAG‑ATTTAAAAAT‑ATAATTTAAT‑TTTTTTTTTTTAAATTTCGTGATAAAGAT‑AACAAAAAAGACAATTTGTAAATTTTTAGAGGTGGGTAAGGGCAAATAACGGCCTCCCGAGAgggga > 2:3410519/1‑147 (MQ=255) cGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTGAAAAT‑ATAATGAAAA‑TATTTTTTTTTAAATATCTCGATAACCAT‑AACAAAAAAGTCAATATTAAATATATTCTGGGAGTGAAATGCAAAAAAAAGGCCACCCGATAGGGGAg > 2:2284561/1‑149 (MQ=255) cGTACATTTTCATATCCTGTCGT‑GTGTTTTCG‑ATTTAAAAAT‑ATAATTTAAT‑TATTTTTTTTTAAAAATCGAGATAACGAT‑AACAAAAACGACAATATGAAAATTATTCGAGGAGTGGAAGGCAAAAAAACGGCCACCCGATAGGGAAg > 2:812216/1‑149 (MQ=255) aaaTTTTCATAGCCTGTCGT‑TTGTTTTCG‑ATTTAAAAAT‑ATAATGAAAT‑TATTTTTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCg < 2:2889216/147‑1 (MQ=255) aCATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATATTGAACT‑TATTTTTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCg < 2:3653608/149‑1 (MQ=255) aTTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTAAAAAA‑ATAAATAAAA‑TATTTGTTTTTAAATATAGAGATAACGAT‑CAAAAAAAAGAAAAAAATTAAAATATTAGAGGAGTGAAAGGCAAAAAAACCGCCAACCCATAGGGAAAcccga > 2:416119/1‑146 (MQ=255) aTTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTAAAAAA‑ATAATTAAAT‑TATTTTTTTTTAAATATCGAGATAACGAT‑CACAAAAAACACAAAATTAAAATTATTCGAGGAGTGAAAGGCCAAAAAAAGGCCACCCGATAGGGAAGCCgaa > 2:2903829/1‑147 (MQ=255) ttatCGTGTTTT‑TTTTTTTCT‑TTTAAAATAT‑ATATTTATAT‑TTTTTTTTTTTAAATATCTATATATCTAA‑AACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAg < 1:152777/148‑1 (MQ=255) atCCTGTCGT‑TTGTTTTAG‑ATTTAAAAAT‑ATAATGAAAT‑TATTTTTTTTTAAAAATATAGATAACGATACAAAAAAAC‑ACAAAAAGAAAATTATTAGAGGAGTGAAATGCAAAAAAAAGGCCACCCCATAGGGAAACCCTAGCCAAGTg > 2:4519433/1‑149 (MQ=255) tCCTTTCTT‑TTTTTTTCT‑ATTAAAAAAT‑ATAATTATTT‑TTTTTTTTTTAAATTATCTATAAAACTAA‑CAAAACAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgc < 1:1348954/149‑1 (MQ=255) tgtgtt‑tttttttTG‑ATTAAAAAAT‑ATAATTAAAT‑TTTTTTTTTTTAAATATCTATATAACGAA‑AACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGcgcg < 1:216846/144‑1 (MQ=255) gt‑ttttttTCG‑ATTTCAAAAT‑ATATTGATTT‑TATTTTTTTTTAATTATGGATATATCTTT‑AACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt < 2:1190712/149‑1 (MQ=255) gt‑ttgtttTCG‑ATTTCAAAAT‑ATAATGGAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 2:4136788/1‑149 (MQ=255) gt‑ttgtttTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 2:1521297/1‑149 (MQ=255) t‑ttgtttTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:4897298/1‑149 (MQ=255) gtttTCT‑ATTTCAAAAT‑ATAATTATTT‑TATTTTTTTTTAAATATCTAGATAACGAT‑CAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa < 2:1931964/149‑1 (MQ=255) ttttCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTGTTAt > 1:4031908/1‑149 (MQ=255) tCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc > 2:1842082/1‑149 (MQ=255) tctttttCAAAAT‑ATAATGAAAT‑TTTTTGTTTTTAAATTTCTATATAACGAA‑CAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc < 2:2058403/145‑1 (MQ=255) g‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg < 2:4206548/149‑1 (MQ=255) g‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 1:2922927/1‑149 (MQ=255) g‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 2:5000218/1‑149 (MQ=255) g‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 2:4999848/1‑149 (MQ=255) tttCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 1:2041954/1‑149 (MQ=255) ttacAAAAT‑ATAATTAAAT‑TATTTTTTTTTAAATATCTAGATAACGAA‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt < 1:4648411/146‑1 (MQ=255) tCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGc > 2:1712046/1‑149 (MQ=255) | TTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAT‑CACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCG > CP009273/2170565‑2170861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |