| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,724 | G→T | 24.7% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,724 | 0 | G | T | 24.7% | 528.5 / 37.3 | 251 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (79/98); new base T (48/21); total (130/121) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.00e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 256 total aligned reads displayed.
TTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATA > CP009273/2170576‑2170872 | ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATg < 2:888112/149‑1 (MQ=255)ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATg < 2:1044139/149‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGa < 2:4885191/149‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGa < 2:4355707/149‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGa < 2:3742332/149‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGaa < 2:3323187/149‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGaaa < 1:4354402/149‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAat < 1:996134/149‑1 (MQ=255) ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTTG‑ATTTAAAAAA‑ATAATTAAat‑t > 2:1752002/1‑149 (MQ=255) caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAat‑ta < 1:3664217/149‑1 (MQ=255) caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTAAAAAT‑ATAAATAAat‑ta > 2:1590495/1‑149 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAat‑tat < 1:2070442/149‑1 (MQ=255) acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGTAAT‑TATTTg < 2:3058861/149‑1 (MQ=255) acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTg < 2:4244081/149‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAG‑ATTTAAAAAT‑AAAAATAAAA‑TAttttt > 1:1106912/1‑147 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGtt < 1:3427900/149‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGtt < 1:847957/149‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGtt < 1:4143533/149‑1 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGttt < 1:2975494/149‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCT‑ATTTAAAAAT‑ATAATTAAAA‑TATtttttttt > 2:3589400/1‑149 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGttttt < 1:803564/149‑1 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTGTTTT‑G‑ATTTAAAAAA‑ATAATTAAAA‑TATATTTTTTTa > 1:4966693/1‑149 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAT‑AATTAAAAAT‑ATAATTAAAT‑TAAttttttttt > 1:3355094/1‑148 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTa < 1:1274660/149‑1 (MQ=255) tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTAAAAAT‑ATAAATAAAT‑TAATTTTTTTTaa > 2:2947166/1‑149 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAata < 2:1084320/149‑1 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATc < 1:687146/149‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCga < 2:2713705/149‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTAAAAAA‑AAAAATAAAA‑TATTTTTTTTTTAATATAgaa > 2:1369561/1‑148 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCgaga < 1:2640763/149‑1 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑AATTCAAAAA‑ATAATTAAAT‑TATTTGTTTTTAAATTTAgaga > 2:2061183/1‑149 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTGTTTTTAAAAAA‑AAAAATAAATATATTTTTTTTTatatataaa > 1:3062224/1‑146 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTAAAAAT‑ATAATGAAAA‑TATTTTTTTTTTAATATAgaga > 1:1201293/1‑149 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATa < 2:3569042/149‑1 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATa < 2:4155029/149‑1 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAAc < 2:169658/149‑1 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTTTTTTGG‑ATTTAAAAAA‑ATAATGGAAA‑TATTTGTTTTTAAAAAACGAGATaaac > 2:4906035/1‑147 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGTGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGa < 2:4681810/149‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAt < 2:4076995/149‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATc < 2:3623896/149‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATc < 1:4515834/149‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAT‑TTTTAAAAAA‑AAAAATAAAA‑AAATTTTTTTTTAATATATAGATAAAGaaa > 1:1444723/1‑147 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATcac < 1:4704468/149‑1 (MQ=255) ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTAAAAAA‑ATAAATAAAA‑TATTTTTTTTTATATATCGAGATAAAGATaaca > 1:5186311/1‑149 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGGTTTAG‑ATTTCAAAAT‑ATAATGAAAA‑TATTTTTTTTTAAATATCGAGATAAAGATAACAAAAACGACa > 2:3007551/1‑149 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGG‑ATTTAAAAAT‑ATAAATAAAA‑TAATTTTTTTTTAATATAGAGGTAAAGAAAACaaaaaaaaaa > 1:2056954/1‑144 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCG‑ATTTGAAAAT‑ATAATGAAAT‑TATTTTTTTTTTAATATCGAGATTACGATCACAAAAAAGACaa > 2:4877597/1‑149 (MQ=255) cccATACCCGCCGCGCTGTGCGTTTTTCCGCATCTGCTTTGTCGATACCCCGTACATTTTCATATCCTGTCTT‑TTGTTTTCT‑ATTAAAAAAT‑ATAATGAATT‑TTTTTTTTTTTAAATATCTATATAACTATCACAAACACGACAATATg < 2:3991136/147‑1 (MQ=255) tAACCGCCGGGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCCCGTACATTTTAATATCCTGTCGT‑TTGTTTTCT‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGaaaa < 2:3368023/149‑1 (MQ=255) tAACCGCCGCGCTGTGGTTTTTTCAGCATCTGTTTTGTCTATACCACGTACATTTTCATATCCTGTCTT‑TTGTTTTCG‑ATTTAAAAAT‑ATAATGAAAT‑TATTTTTTTTTAAATATCGAGATAACGATCAAAAAAACGACAATATGaaaa < 2:4536350/149‑1 (MQ=255) atcagacgcgCTGTGCGTTGTTCACCATCTGCTTTGTCGATACCACTTACATTTAAATATCCTGTCGT‑TTGTTTTCT‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAat < 2:5160610/143‑1 (MQ=255) ccgccgCGCTGTGCTTTGTACAGCATCTGCTTTGTCGATACCCCGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑TTTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGAACACAAAAACGACAATATGAAAatta < 2:407553/149‑1 (MQ=255) ccgccgCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTAAAAAA‑ATAAAGAAAT‑TATTTTTTTTTAAATAACGAGATAACCAAAACAAAAACGACAATATGAAAatta > 2:2532941/1‑149 (MQ=255) gccgcGCTGTGCGTTGTACAGCATCTGCTTTGTCGATACCACGTAAATTTTCATAACCTGTCGT‑TTTTTTTCG‑ATTACAAAAT‑ATAATGAAAT‑TATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAattatt < 2:5057987/149‑1 (MQ=255) gcggtgCGTTGTACAGCATCTGCTTTGTCTATACCACGTAAATTTTCATCGCCTGTCGT‑TTGTTTTCT‑TTTTCAAAAT‑ATATTGAAAT‑TATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCgagg < 1:2508782/146‑1 (MQ=255) gtgCGTTGTTCTGCATCTTCTTTTTCGATACCACGTAAATTTTAATATCCTGTCTT‑TTTTTTTCG‑ATTACAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGt < 2:617107/149‑1 (MQ=255) gttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑AATTAAAAAA‑ATAAAGAAAT‑TATTTTTTTTTAAATATAGAGATAACGATAAAAAAAACGAAAAAATTAAAATTATTAGAGGAGTGaaa > 2:2857427/1‑149 (MQ=255) gttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTT‑TTTTAAAAATAAAAATAAAAT‑AATTTTTTTTTAAA‑AAATAGATAAAAAAAAAAAAAAAGACAATAATAAAATTATTAGAAGAGttgta > 1:1583049/1‑145 (MQ=255) tttacAGAATCTGTTTTGTCTATACAAGGTAAATTTTCATCTCATTTCTT‑TTTTTTTCT‑ATTAAAAAAA‑ATAATTAAAT‑TATTTTTTTTTAAATATCTAGATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAgg < 2:4460101/145‑1 (MQ=255) aGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTAAAAAA‑ATAAATCAAA‑TATTTTTTTTTTAAAAAAGGGATAACGATAACAAAAACCAAAAAATGTAAATTATTCGGGGGGGGAAAGGCacaa > 2:1498465/1‑149 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTGT‑TTTTGAAAAA‑ATAAATAAAA‑AATTTTTTTTTTAATATTGAGTTAAAGAAAAAAAAAAACACAAAAATAAAAATATTAAAGGATGGGAAGGAcaaaaaa > 2:3492319/1‑149 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTAATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATTAAAT‑TATTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaaa < 2:2792899/149‑1 (MQ=255) gtGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑TTTTCAAAAT‑ATAATGAATT‑TTTTTGTTTTTAATTATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACg < 2:192705/148‑1 (MQ=255) tGTCGATACCAGGTAATTTTTCTTATCGTGTCGT‑TTGTTTTCG‑TTTTAAAAAT‑ATATTGAATT‑TATTTTTTTTTAATTATCGTTATAACTATCACAAAAACGACAATATGAAAATTATTCGTGGAGTGAAAGGCAAAAAAACGGCCTcc < 1:417876/149‑1 (MQ=255) gTCTATACCACGTAAATTTTCATATCCTGTTTT‑TTTTTTTCT‑ATTTAAAATT‑ATAATCAAAT‑TATTTTTTTTTAAATATCTATATAACTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTccc < 1:1690733/149‑1 (MQ=255) gATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGG‑ATTTAAAAAT‑ATAATTAAAT‑TATTTGTTTTTTAATATAGAGATAAAGATCACAAAAAAGAAAAAATTAAAATTATTAGGTGGGGGTAATGGAAAAAAAAGGCCACCCgct > 2:2021854/1‑147 (MQ=255) aaaCCACTAACATTTACATATCCGGGCTT‑TTGTTTCCT‑ATTACAAAAA‑ATAATCAAAT‑TATTTTTTTTTAAATATCGATATAACTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATa < 2:4787106/147‑1 (MQ=255) aCGTACATTTTCATATCCTGTCGT‑TTTTTTTAG‑ATTTAAAAAT‑ATAATTTAAT‑TTTTTTTTTTTAAATTTCGTGATAAAGATAACAAAAAAGACAATTTGTAAATTTTTAGAGGTGGGTAAGGGCAAATAACGGCCTCCCGAGAgggga > 2:3410519/1‑147 (MQ=255) cGTACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTGAAAAT‑ATAATGAAAA‑TATTTTTTTTTAAATATCTCGATAACCATAACAAAAAAGTCAATATTAAATATATTCTGGGAGTGAAATGCAAAAAAAAGGCCACCCGATAGGGGAg > 2:2284561/1‑149 (MQ=255) cGTACATTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTAAAAAA‑ATAATTAAAT‑TATTTTTTTTTAAATATAGAGATAAAGATCACAAAAACGACAAAATTAAAATTATTCGAGGTGTGAAAGGCAAAAAAAACGCCTACCGATAGGGAAg > 2:812300/1‑149 (MQ=255) gTACATTTTCATATCCTGTCGT‑TTTTTTTCG‑ATTTCAAAAT‑ATATTGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc < 2:3819118/149‑1 (MQ=255) gTACATTTTCATATCCTGTCGT‑GTTTTTTAG‑ATTTAAAAAT‑ATAATTAAAT‑TATTTTTTTTTAAATATCGAGATAAAGATAACAAAAACGACAAAAAGAAAATTATTAGAGGAGTGAAACGCAAAAAAAAGGCCACCCGAAATGGTAGc > 2:773218/1‑149 (MQ=255) tACATTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTCAAAAA‑ATAATGAAAT‑TATTTTTTTTTAAATATCGAGATAACGATAACAAAAAAGACAAAAAGTAAATTATTTGAGGGGTGGAAGGCCAAAAAAACGCCGCCCCAAAGGGACGcc > 2:2076720/1‑149 (MQ=255) aaaTTTTCATAGCCTGTCGT‑TTGTTTTCG‑ATTTAAAAAT‑ATAATGAAAT‑TATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCg < 2:2889216/147‑1 (MQ=255) aTTTTCATATCCTGTCGT‑TTGTTTTAG‑ATTTAAAAAA‑ATAAATAAAA‑TATTTGTTTTTAAATATAGAGATAACGATCAAAAAAAAGAAAAAAATTAAAATATTAGAGGAGTGAAAGGCAAAAAAACCGCCAACCCATAGGGAAAcccga > 2:416119/1‑146 (MQ=255) aTTTTCATATCCTGTCGT‑GTGTTTTAG‑ATTTAAAAAA‑ATAATTAAAT‑TATTTTTTTTTAAATATCGAGATAACGATCACAAAAAACACAAAATTAAAATTATTCGAGGAGTGAAAGGCCAAAAAAAGGCCACCCGATAGGGAAGCCgaa > 2:2903829/1‑147 (MQ=255) ttttCATATCCTGTCGT‑TTGTTTTTG‑ATTTGAAAAA‑ATAATTAAAT‑TTTTTTTTTTTTTATTTAGTGTTTACGATAAAAAAAACGAGAATATTTAAATTATTGGTTGTGTGTTAGGGGAAAAAAATGACTGCCGAGAGGGAGTCCGttg > 2:3642088/1‑147 (MQ=255) tCCTTTCTT‑TTTTTTTCT‑ATTAAAAAAT‑ATAATTATTT‑TTTTTTTTTTAAATTATCTATAAAACTAACAAAACAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgc < 1:1348954/149‑1 (MQ=255) gt‑ttttttTCG‑ATTTCAAAAT‑ATATTGATTT‑TATTTTTTTTTAATTATGGATATATCTTTAACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt < 2:1190712/149‑1 (MQ=255) gt‑ttgtttTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:4062827/1‑149 (MQ=255) t‑ttgtttTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtgtgt > 1:3280699/1‑147 (MQ=255) t‑ttgtttTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 1:4745730/1‑149 (MQ=255) ttttCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATCGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 2:4052954/1‑149 (MQ=255) tCG‑ATTTCAAAAT‑ATAATTAAAT‑TATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc < 2:2056954/149‑1 (MQ=255) tCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc > 2:1842082/1‑149 (MQ=255) g‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAATCGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTTTGCCgg > 1:4558467/1‑149 (MQ=255) g‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 1:2922927/1‑149 (MQ=255) g‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 2:5000198/1‑149 (MQ=255) aTTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa > 2:462229/1‑149 (MQ=255) tCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGc > 2:1712046/1‑149 (MQ=255) aaaaT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 2:3883892/1‑149 (MQ=255) aaaaT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 1:4125842/1‑149 (MQ=255) t‑ataATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 2:3261712/1‑149 (MQ=255) ataATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa > 1:2030777/1‑149 (MQ=255) taATTAAAT‑TATTTTTTTTTAAATATCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa < 1:1093930/149‑1 (MQ=255) taATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa > 1:4901031/1‑149 (MQ=255) taATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa > 1:4901076/1‑149 (MQ=255) aTGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 1:3718849/1‑149 (MQ=255) tGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt > 1:4028613/1‑149 (MQ=255) gAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATa > 2:221050/1‑149 (MQ=255) | TTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCG‑ATTTCAAAAT‑ATAATGAAAT‑TATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATA > CP009273/2170576‑2170872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |