| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,178,915 | C→G | 9.7% | intergenic (‑135/+88) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,915 | 0 | C | G | 9.7% | 704.0 / 11.1 | 227 | intergenic (‑135/+88) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Reads supporting (aligned to +/- strand): ref base C (54/149); new base G (22/2); total (76/151) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.30e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 228 total aligned reads displayed.
GGTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTA > CP009273/2178768‑2179061 | ggTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCg > 1:4754748/1‑149 (MQ=255)ggTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCg > 2:3020583/1‑149 (MQ=255)ggTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCg > 1:5012089/1‑149 (MQ=255) tCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCgat < 1:1901630/149‑1 (MQ=255) tCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCgat > 2:4971736/1‑149 (MQ=255) cGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCgatg < 1:3881689/149‑1 (MQ=255) aCTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGGgatgtt > 1:2620310/1‑147 (MQ=255) ttGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATaa < 1:1725775/149‑1 (MQ=255) ttGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGCGATGATaa > 2:4645581/1‑149 (MQ=255) gCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGCTaaaa > 2:20214/1‑148 (MQ=255) aTAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGATGATaaaaaa > 1:712178/1‑146 (MQ=255) tGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGATGGTAAAAAGCAgagg > 1:412340/1‑149 (MQ=255) tCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGaggagg < 2:487855/149‑1 (MQ=255) tCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTTGGATGTTAAATACCAGaggggg > 1:4103306/1‑149 (MQ=255) cTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGAt < 1:913435/149‑1 (MQ=255) tGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATg < 2:781719/149‑1 (MQ=255) gCCATCACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATgg < 2:1062165/149‑1 (MQ=255) gCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGGATGATAAATAGCAGAGGAGGGTgg > 1:2566789/1‑149 (MQ=255) cATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGATGATAAAAAGCATCGGGGGATGGtg > 1:1164936/1‑148 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTGGGCTGATAAATCGCCGAGGAGGATGGTAAt > 2:1823509/1‑149 (MQ=255) aCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGt < 1:853143/149‑1 (MQ=255) aCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGGTGTTAAATAGCAGAGGAGGATGGTTATGt > 2:1243073/1‑149 (MQ=255) aCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGCGATGGTAAATAGCAGAGGGGGGTTGTGATGt > 1:2385113/1‑149 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGATTGTAAAAAGCAGAGGGGGGTGGGTATGtga > 2:28404/1‑147 (MQ=255) agaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGCGCTGATAAAACGCAGAGGAGGATGGTAATGTCCAgcg > 2:2696352/1‑149 (MQ=255) gaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAgcgc < 2:4373094/149‑1 (MQ=255) agCAATGACCTTGTGGTCCGTGACTTCCCTACGCTTGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCAc < 1:1428430/149‑1 (MQ=255) agCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGATGTTAAATCGCAGAGGAGGATGGGAATGTGCAgccccc > 2:3609760/1‑145 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGt < 2:3515209/149‑1 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGCATATAAAAACCACAGGAGGAGGGTAAATTCCCGCGCACCCGt > 2:1677142/1‑149 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATTATAAATAGCAGAGGAGGGTGGTTATGTAAAGCGCACGCGt > 2:74297/1‑149 (MQ=255) tGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGGAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGtt < 2:2291644/149‑1 (MQ=255) cTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaa < 1:228406/149‑1 (MQ=255) tggtggTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 1:1036854/149‑1 (MQ=255) tggtggTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 1:223397/149‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGAGTTGTAAAc < 2:3095062/149‑1 (MQ=255) ggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAAACGCAGAGGAGGGTGGTTATGTCCAGCGCACCCGTTTTAAACGac > 2:4315044/1‑148 (MQ=255) gTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGGGGTGATAAATAGCAGAGGAGGGTGGTGATGTGCCGCGCCCCCCGTGTAAAAGAGG‑aaaa > 1:2453100/1‑149 (MQ=255) tGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑aaaaa < 2:3811400/149‑1 (MQ=255) tGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑aaaaa < 2:1198749/149‑1 (MQ=255) gACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAAc < 1:2208351/149‑1 (MQ=255) cTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACgg < 1:3787047/149‑1 (MQ=255) cTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTTGGAAGAAAAAAAACAGAGGAGGATGGTAATTTCCAGCGCACGCGTTGTAAAAGAGG‑AAAAAccg > 2:1819526/1‑147 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGc < 1:3655401/149‑1 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGc < 2:3926280/149‑1 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGATGATAAATCGCAGAGGAGGTTGGTAATTTCCACCGCACGCGGTGTAAACGCGG‑AAAAACGGc > 2:3452279/1‑149 (MQ=255) tCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCTGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCa < 1:5148813/149‑1 (MQ=255) cccTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAAAAGCAGAGGAGGATGGTAATGTCCAAAGCACCCGTTGTAAAAGAGG‑AAAAACGGCaa > 2:4986616/1‑148 (MQ=255) ccTACGGGGGCTTTATCCAGATCAGGTGATAGGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCTGAGGAGGAGGGTATTGTCCAGCGCACGCGTTGTAACCGAGG‑AAACACGGCAGt < 2:1378277/149‑1 (MQ=255) aCGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGtttt < 2:226038/149‑1 (MQ=255) tGGCATTATCCAGAGCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGACGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCTGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACaa < 2:3955012/149‑1 (MQ=255) ggCATTATCCAGATCTGGTTATACGGGTTTTTCCCAGCCTTCACGCAGATGGGCACCCCGTGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGATGTTAATGTCCAGCGCACGCGTTGTAACCGAGG‑AAAAACGGCAGTTTTACAAt < 1:2842760/149‑1 (MQ=255) ggCATTATCCAGATCAGGTGATACGGGTATTTCTCCGCCTACACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAAt < 1:4665852/149‑1 (MQ=255) ttATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCTGAGTCGTTGGGTTGCGATGAGAAATCGCCGAGGCGGATGGTAAAGGCCCGCGCCCGCGTTGTAAACGAGG‑AAAAACGGCCCTTTTACACTcgcg > 2:3342113/1‑149 (MQ=255) tATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTGGGTTGCGCTGTAAAAACGCAGGGGAGGCTGGTGATGTCCCGCGCCCGCGGTGTAAACCAGG‑AAAAACCGCAGGTTTTCAAACGCGt > 2:2381592/1‑149 (MQ=255) aTCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGGTGATAAATAGCAGACGCGGCGGGTAAAGTCCACCCCACCCCGTGTAAACCAGGCACAAACGCACGTTTTACaacgccgt > 2:3488249/1‑143 (MQ=255) ccAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTtaa < 1:3392288/149‑1 (MQ=255) ccAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGCGATGATAAAAAGCACGGGCGGCTGGTAATTTCCCCCCCCACCGGTGTAAACGAGG‑AAAAACCGCACGTTTACACACGCGGtaa > 2:4063893/1‑149 (MQ=255) cataTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTtaat < 2:5153041/146‑1 (MQ=255) aGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTTCGATTTTAAATAGCAGAGGAGGATGGTTATGTCCAGCGCCCGCGTTGTAAAAGAGG‑AAAAAAGGCAGTTTTACAATAGCGTtaaaa > 2:285049/1‑147 (MQ=255) aGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTTCGATGATAAATAGCAGAGGAGGATGGTAATTTACAGCGCACGCGTTTTAAAAGAGG‑AAAAAAAGCAGTTTTTCAAAAGCGTtaatt > 2:5068528/1‑148 (MQ=255) aGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTtaata < 2:2689248/149‑1 (MQ=255) aGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAAAAGCCGAGGGGGGTGGGAAAGTCCCCCCCACCCGTTGTAAACCAGG‑AAAAACCGCCGTTTTAAAAACGCGTtaata > 2:2077747/1‑149 (MQ=255) gATCAGGTGATACGGGTATTACTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTCGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTtaataa < 1:2718499/149‑1 (MQ=255) tCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAat < 2:155838/149‑1 (MQ=255) tCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAAAAGCAGAGGAGGATGGTAATTTGCCCCGCACCCGTTGTTAACAAGG‑GAAAAACGCACGTTTTCAAACGCGTTTATaaaa > 2:2112326/1‑148 (MQ=255) tCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGATGATAAATAGCACAGGATGCTGGTAAATTCCAGCCCACGCGGTGTAAACGAGG‑GAAAAAAGCAGTTTTAAAAAAGCGGTAATAAat > 2:1874015/1‑149 (MQ=255) tCAGGTGATACGGGTATTTCTCAGCCGTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGTGGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAat < 2:416835/149‑1 (MQ=255) cAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAatt < 2:2456289/149‑1 (MQ=255) aGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAatta < 2:4178139/149‑1 (MQ=255) tACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGat < 1:2846083/149‑1 (MQ=255) gggTATTTCTCAGCATTCACGCATAAGGGCACCCCGAGTCGTTTGGTTGCTATTATAAATCGCAGAGGAGGATGTTAATGTCCAGCGCACGCTTTGTAAACGAGT‑AAACACGGCAGTTTTACAATCGCGTTAATAAATTATTTGatata < 1:3132127/149‑1 (MQ=255) ggTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGT‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGatatat < 2:1546712/149‑1 (MQ=255) aTTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGaa < 2:3049299/149‑1 (MQ=255) aTTTCTCAGCATTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGAGGTGGATGGTAATGTCCTGCGCACGCTTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGaa < 1:2352105/149‑1 (MQ=255) tttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGCGATGATAAATAGCAGGGGAGGATGGTAATGTACAGCGCACGCGTTGTTAAACATG‑AAAAAACGCAGGTTTTAAATAGCGTTAATAAATTATTTTATATATTAAt > 2:1149566/1‑149 (MQ=255) tctcAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 2:3447117/149‑1 (MQ=255) tctcAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 1:1276476/149‑1 (MQ=255) tctgCCTTCACGCTGATGGGCACCCCGTTTGTTTTGGTTGGGTTGATAAATGGCTGTGGTGGATGGTAATGTCCAGCGCACGGGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAg < 1:2919542/146‑1 (MQ=255) cAGCCTTCACGCAGACGGGCACCCGGAGTGGTTTGGTTGCGTTTATAAATCGCATCGTAGGTTGTTATGGTCCAGCGCACGCGTTGTAAACGAGG‑AAACACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGc < 1:878948/149‑1 (MQ=255) gCCTTCCCGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGTGGTGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAc < 1:690938/149‑1 (MQ=255) gCCTTCACGCATAAGGGCACCCCGAGTCGTTTGTTTGCTTTTATAAATCGCAGTGGTGGTTGTTAATGTCCAGCGCACGCTTTTTAAACGTGT‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAc < 1:76452/149‑1 (MQ=255) gCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAc < 2:4718922/149‑1 (MQ=255) gCAGAAGGGCACCCCGAGTCTTTTGGTTGCGATGATAAATCGCAGCGGCGGATGGTAAGGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGaa < 1:2028760/149‑1 (MQ=255) aaGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGAc < 1:2077061/149‑1 (MQ=255) aGGGCACACCGAGTCGTTTGGTTGCGATGATAAATCGCTGAGGAGGTTGGTAATGTCCAGCGCACGCGTTGTTAACGAGG‑AAAAACTGCAGTTTTACAATCGCGTTTATAAATTATTTGATATTTGAATCCAGCACCTTCAGAACGACa < 2:2543288/149‑1 (MQ=255) gCACCCCGAGTCGTTTGGTTGCGTTGATAAATCGCAGAGGTGGATGGTATTGTCCAGCGCACGCGTTGTAAACGAGT‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATcc < 2:897956/149‑1 (MQ=255) cACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCa < 1:483640/149‑1 (MQ=255) ccccGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGT‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGa < 1:3322998/149‑1 (MQ=255) gAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtctt < 2:1073764/149‑1 (MQ=255) gTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtcttct < 1:821100/149‑1 (MQ=255) gTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtcttct < 2:380226/149‑1 (MQ=255) gTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCCCGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCa < 1:575165/149‑1 (MQ=255) gTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCa < 1:3168157/149‑1 (MQ=255) ttGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACg > 2:1861115/1‑149 (MQ=255) ttgTTGCTATTTTAATTCGCTGTGGAGGTTTGTAATTTCCAGCGCACGGGTTGTAAACGTGG‑AAAAACGGCAGTTTTACAATCGCGTTATTAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGt < 1:2471089/147‑1 (MQ=255) tGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGt < 1:3609760/149‑1 (MQ=255) ggTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtt < 1:2923134/149‑1 (MQ=255) ttGCGATGATAAATCGCAGAGGAGGATGGTAAGGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt < 1:4542732/149‑1 (MQ=255) tGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTa < 1:4645581/149‑1 (MQ=255) | GGTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGG‑AAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTA > CP009273/2178768‑2179061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |