| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,222,655 | C→G | 7.4% | intergenic (+111/+262) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,222,655 | 0 | C | G | 7.4% | 235.3 / 3.4 | 84 | intergenic (+111/+262) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Reads supporting (aligned to +/- strand): ref base C (3/74); new base G (5/2); total (8/76) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.57e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAT > CP009273/2222508‑2222800 | aCTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCa < 1:1681603/149‑1 (MQ=255) ggtggtGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAggg < 2:3941406/149‑1 (MQ=255) gtggtgACTTGATTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAgggg < 2:2620343/149‑1 (MQ=255) ggtgACTGGCGTATTTAAGATTATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGggc < 2:3598770/149‑1 (MQ=255) ggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGggc < 1:3316108/149‑1 (MQ=255) ggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGggc < 1:70156/149‑1 (MQ=255) ggtgACTGGCGTATTTAAGATGATATTTTAAAAGTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCgggggg > 1:390898/1‑148 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggggggc > 2:4358589/1‑147 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGcc < 2:3146449/149‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGcc < 2:1636317/149‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGcc < 2:3964668/149‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGcc < 2:3964693/149‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGcc < 2:3964718/149‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGcc < 1:1345066/149‑1 (MQ=255) cTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggggggcc > 1:4754380/1‑146 (MQ=255) cTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCa < 1:211967/149‑1 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATCTAATCACTGGCGCAAGGAGCGC‑GGCgggggggggcgc > 1:803867/1‑145 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggggggggc > 2:896062/1‑145 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggggggcca > 2:194306/1‑145 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTGTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATCTTCACTGGCGCAAGGAGCGC‑Ggggggggggggggga > 2:4596176/1‑144 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATCATCACTGGCGCAAGGAGCGC‑Ggggggggggggccca > 1:665277/1‑144 (MQ=255) tATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGGGGGGGGGGGCCAACcgc > 2:2702765/1‑149 (MQ=255) tttAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgc < 2:4430913/149‑1 (MQ=255) ttAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc < 1:1872346/149‑1 (MQ=255) ttAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc < 1:1372171/149‑1 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGccc < 1:3403183/149‑1 (MQ=255) atgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGcccc < 2:3616317/149‑1 (MQ=255) tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGccccc < 1:4173705/149‑1 (MQ=255) tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCACAAGGAGCGC‑GCAGGGGGCGGCCAAGCGCCGCCGccccc < 1:1406267/149‑1 (MQ=255) atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCCGGGGGGGGCCAAccccccccccccccgcc > 2:4222136/1‑146 (MQ=255) tAAAATTAATTCAGGTCATCAGGTCCGAACATAACGCGAATATTTCAGTCTCTCATCCTGTGGCGCTCCTGTCCTGTGCTGTGCTTCATATACCCACGGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAACCGCCGCCGCCCCCTGCAcccc < 1:4839632/149‑1 (MQ=21) ttaattaaTTTCATAAGGTCCTAAAATAACTATAATATTTAAGTCTCTCATCATGTTGCGCTCCTGTCTTGTGCATTGCTTAATATAATCACTGGCGCAAGTAGCGC‑GCTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGc < 2:1200603/149‑1 (MQ=25) ttaatGTCATCAGGTCCTAAAATAACGAGAATATTTAAGTCTATCATCCTGTTGCGGTCCTTTCTTGTGCTTTGCTTCATATAATCACTGGCGCACGGTGCGC‑GCTGGGGGCGGCAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTg < 1:301295/149‑1 (MQ=21) ttaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGGGGGGGGGGGCCAAAcccccccccccccccccccccccccccag > 1:409203/1‑142 (MQ=255) caGGTCCTAAAATAACGATAATTTTTCTGTCTCTCATCCTGTTGCGCTCCGGTCATGTGCTTTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaaa < 2:208122/149‑1 (MQ=21) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATACTCACTGGCGCACGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt < 2:1505845/149‑1 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCGGGGGGCGGCCAAGCGCCGCCCCCCCCAGCCCCCCCCGGCGCGGGCGAACaaaaa > 2:402194/1‑148 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt < 2:4686228/149‑1 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt < 2:3591351/149‑1 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt < 2:4686305/149‑1 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt < 2:3430464/149‑1 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCTTGTGCATTGATTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt < 2:169156/149‑1 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGGTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑GCTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt < 2:2759372/149‑1 (MQ=255) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGGGGCCCAACACCCCCCCCCCCCGCCCCCCCCCGCCCCGGGGGACaaaaaacacc > 2:4181881/1‑143 (MQ=255) aaTAACTATAATATTTCAGTCTCTCATCGTGTTGCGCTCCTTTCTTGTGCTTTGATTAATATAATCAGGGGCGAACGGAGCGC‑GCTGGGGGCGCCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgc < 2:3527686/149‑1 (MQ=18) aaTAACGATAATATTTCAGTATCTCATCCTGTTGCGCTCCTGTCTTGTGAATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgc < 2:431081/149‑1 (MQ=255) aaTAACGAGAATATTTAAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgc < 2:431374/149‑1 (MQ=255) tatTTCTGTCTCTCATCCTGGTGCGCTCCTGTCATGTGCTTTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTc < 2:2459319/149‑1 (MQ=255) ttCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACGGGCGAACGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc < 2:1458623/149‑1 (MQ=255) ttCAGTCTCTCATCCTGTGGCGCGCCTGTCATGGGCATTGCTTCATATAATCACGGGCGCAAGGTGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc < 2:4943893/149‑1 (MQ=18) cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGAATTGATCAATATAATCACTGGCGCACGTCGCGC‑GCCGGGGGCGGCCAACCGCCGCCCCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt < 2:1722511/149‑1 (MQ=18) cAGTCTCTCACCCGGTTGCGCTCCTTCAATGGGCATTGCTCAATAAAATCACGGGCGCACGTCGCGC‑GCGGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt < 2:1722525/149‑1 (MQ=17) tctcATCGTGTTGCGCTCCTTTATGGTGCTGTGCTTCATATAACCAGTGGCGCAAGGCGCGC‑GCTGGGGGCGGCCAAGCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATccc < 1:4550868/149‑1 (MQ=14) tctcACCCTGTTGCGCTCCTTTAATGTGATTTGCTTAAATTAAGCACGGGCGCATGGTGCGC‑GCTGGGGGGGGCAAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATccc < 1:3222662/149‑1 (MQ=14) gtggcgcTCCTGTCTGGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑GCAGGGGGCGGCCAATCGCGGCCGCCCCGTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTa < 1:2986471/146‑1 (MQ=17) gTTGCGCTCTTTTCTTGTGCTTTGTTTAATATAATCCGTGGCGCATGGCGGGC‑GCGGGGGGGGGCAAAGCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTa < 1:4134538/149‑1 (MQ=14) gTTGCGCTCTTGTCTTGTGCTTTGATTCATATAATCCGTGGCGCATGTTGCGC‑GCTGGGGGGGGCAAATCGCGGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTa < 1:4134539/149‑1 (MQ=17) gTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTa < 2:4206026/149‑1 (MQ=255) ttGGGCTCGTGTCTTGTGATTTGCTTCATATAATCAGTGGCGCACGGAGCGC‑GCTGGGGGGGGCAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGTGGTGCCCTCGGCTTATCCCTTACGGCTAc < 1:5179180/149‑1 (MQ=14) gcgcTCGTGTCTTTTGCTTGGCTTCATATAATCGCGGGCGCAGGGGGGGG‑GGGGGGGGCGCCCATGCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCg < 1:4864280/149‑1 (MQ=14) gcgcTCCTGTCTTGTGATTTGCTTCATATAAGCACTGGCGAACGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCGCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCg < 1:1061807/149‑1 (MQ=17) cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt < 2:5016423/149‑1 (MQ=255) cTCCTGTCATGTGCATTGCTTAATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt < 2:5016976/149‑1 (MQ=255) tCCTGTCTTGTGCTTTGCTTCATATAATCAGTGGCGCATGGTGCGC‑GCTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTc < 1:356328/149‑1 (MQ=17) tCCTGTCTTGTGATTTGCTTCATATAATCACTGGCGCACGGAGCGC‑GCTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTc < 1:4989128/149‑1 (MQ=14) cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCgg < 2:3370544/149‑1 (MQ=255) gtgCTTTGCTTAATATAATCACGGGCGCATGGCGCGC‑GCGGGGGGGGGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAAC‑AAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAgg < 1:4924610/149‑1 (MQ=14) gtgCATTGATTCATATAATCACGGGCGCACGGCGCGC‑GCTGGGGGCGGCCACCCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAAC‑AAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAgg < 1:4924586/149‑1 (MQ=14) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAgg < 2:3450058/149‑1 (MQ=255) gttttGCTTAATATATTCCCTGGCTAAGGGTGGGG‑GCTGGGGGGGCCAAACCGCCGCCGCCCCCGCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 1:4101019/146‑1 (MQ=11) gctttGATTAATATAATCTGGGGCGCATGGGGCGC‑GCGGGGGGCGCCACCGCGCCCCCCCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 1:1382130/146‑1 (MQ=11) ctttGCTTCATATAACCCCGGGCGCACGGGGCGC‑GCGGGGGGCGGCCACGCGCCGCCGCCCCCTCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 1:3205802/147‑1 (MQ=14) ctttGCTTCATAAAACCCGGGGCGAACGGCGGGC‑GCGGGGGGGGCCCACCCGCCGCCCCCCCCTCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 1:544812/147‑1 (MQ=11) ctttGCTTAATATAATCCGGGGCGCAGGGCGCGC‑GCTGGGGGCGGCCACGCGCCGCCCCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 1:3205858/147‑1 (MQ=11) cagtGCTTCATATAATCACTGGCGCACGGAGCGC‑GCAGGGGGGGGCCAAGCGCGGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 2:2226180/146‑1 (MQ=14) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 2:1257551/149‑1 (MQ=255) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 2:2429283/149‑1 (MQ=255) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 2:3874073/149‑1 (MQ=255) cATTGATTAATATAATCACGGGCGCACGGAGCGC‑GCTGGGGGCGGCAAACCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 1:3205837/149‑1 (MQ=14) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑ACAGGGGGCGGCCAAACGCCCCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCACCGCTTAAACCATACGGCGAACCCGTCGGGCGCGCGGTAACa > 1:2797810/1‑149 (MQ=255) tataATCACTGGCGCACGGAGGGC‑GCGGGGGGCGCCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGt < 1:3255615/149‑1 (MQ=255) tataATCACGGGCGAATGGCGCGC‑GCTGGGGGCGGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGt < 1:4201943/149‑1 (MQ=11) tataAGCACGGGCGCACGGCGCGC‑GCGGGGGGCGGCAAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGt < 1:4201932/149‑1 (MQ=11) aataACCACTGGCCCATGGCGCGC‑GCGGGGGGCGCCCAAGCGCCGCCGCCCCCGCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGt < 1:1430267/148‑1 (MQ=11) tGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc < 2:5198229/149‑1 (MQ=32) ggCGCAAGGAGCGC‑GCTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGcc < 2:4424567/149‑1 (MQ=17) gcgcATGGCGCGC‑GGGGGGGGCGCCCAAGCGCCGCCGCCCCCTCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc < 1:4369717/149‑1 (MQ=11) gcgcACGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc < 2:3159425/149‑1 (MQ=17) gcgcAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc < 2:2837071/149‑1 (MQ=32) gAGCGC‑CCCGGGGGCGCCCACCCGCCGCCGCCCCCGCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc < 1:4962648/149‑1 (MQ=11) gggc‑gcTGGGGGCGGCAAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcac < 1:1411899/147‑1 (MQ=12) gcgc‑tcTGGGGGCGGCCTCTGCCGGCCGCCCCATGCACCCCCGGGCTCTGGCGAAAAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcac < 1:1412180/149‑1 (MQ=11) gcgc‑gcTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcac < 1:2560463/149‑1 (MQ=17) cgc‑gcTGGGGGCGGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 1:275718/149‑1 (MQ=17) gc‑gcGGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAt < 1:4254489/149‑1 (MQ=17) gc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAt < 1:3874711/149‑1 (MQ=32) | ACTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAT > CP009273/2222508‑2222800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |