| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,598,079 | C→A | 11.7% | L292I (CTC→ATC) | hyfC → | hydrogenase 4, membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,598,079 | 0 | C | A | 11.7% | 785.1 / 14.6 | 266 | L292I (CTC→ATC) | hyfC | hydrogenase 4, membrane subunit |
| Reads supporting (aligned to +/- strand): ref base C (59/158); new base A (46/2); total (106/160) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.03e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 271 total aligned reads displayed.
TGTGGCCCTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTT > CP009273/2597931‑2598227 | tgtgGCCCTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTAc < 1:366568/149‑1 (MQ=255) ggCCCTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACtaa > 2:372441/1‑147 (MQ=255) ggCCCTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCa < 2:364726/149‑1 (MQ=255) ggCCCTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TGTTTAATCa > 1:131807/1‑149 (MQ=255) gCCCTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTAAt > 1:2436946/1‑149 (MQ=255) cccTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCAtt < 1:593205/149‑1 (MQ=255) ccTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTc < 2:3582534/149‑1 (MQ=255) ccTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTAATCAtta > 2:1266779/1‑148 (MQ=255) tGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAATGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCAc < 2:658849/149‑1 (MQ=255) tGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCAATCAc > 2:2121217/1‑149 (MQ=255) tGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGAATTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑GTTTTACTCATTCaa > 2:3735768/1‑148 (MQ=255) tCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCAtg > 2:1481614/1‑149 (MQ=255) tGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCAtgtg < 2:2429706/149‑1 (MQ=255) gCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGa < 2:1116338/149‑1 (MQ=255) gCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTAATCAATAACCAAGTGa > 1:873150/1‑149 (MQ=255) cccTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGAc < 2:841810/149‑1 (MQ=255) ccTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGAcc < 2:3042852/149‑1 (MQ=255) ccTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGAcc < 2:2264657/149‑1 (MQ=255) ccTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑GTTTTACTCATTAACCAAGTGAcc > 2:4523714/1‑149 (MQ=255) cTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCt < 1:2831812/149‑1 (MQ=255) tttGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCAATCACCATGTGACCtg > 2:3132512/1‑149 (MQ=255) ttGGGCGCGCGCAAGAACGTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCTAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCtgg < 1:73006/149‑1 (MQ=255) gggCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCtggct < 1:1823925/149‑1 (MQ=255) gggCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCtggct < 1:4133565/149‑1 (MQ=255) gggCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑GTTTTAATCATTCACCAAGTGACCaggct > 1:4326437/1‑149 (MQ=255) gggCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑GGTTTAATCAATAACCAAGTGACCaggct > 1:205086/1‑149 (MQ=255) gcgcgcAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCtggcttggc < 2:712924/149‑1 (MQ=255) gcgcgcAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCtggcttggc < 2:2155023/149‑1 (MQ=255) aaGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGc < 2:435823/149‑1 (MQ=255) aGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTTAAAAATAAACAAT‑TTACCGGGCTTGGCTTCATcc > 1:2307567/1‑149 (MQ=255) aGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTTCTCATTGAACAAGTTAACTTGCGTGGCTTAAGcc > 2:4136548/1‑149 (MQ=255) aGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGcc > 2:1522590/1‑149 (MQ=255) gAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCt < 1:4829176/149‑1 (MQ=255) aCTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTtg > 2:185595/1‑149 (MQ=255) aCTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCAACATGTGACCTGGCTTGGCTTCAGCCTtg > 2:2086825/1‑149 (MQ=255) aCTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTAATAATTAACCATGTGACCTGGCTTGGCTTAAGCCTtg > 2:2330164/1‑149 (MQ=255) tctcGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTAATTAACCATGTGACCTTGCTTTGCTTAACCCTTGCTgcgc > 2:4183936/1‑149 (MQ=255) cGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTg < 1:4270614/149‑1 (MQ=255) cGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCAATCACCCTGTGACCAGGCTTGGCGTCAGCCATGCTgcgcggg > 2:109239/1‑146 (MQ=255) gcctgtctGCTGACTTCACTTGTCGTTACGCTTCTCCAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCATAAAACACGCTGGCACGCGGGCGT‑TTTTTAATCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGc < 2:2826781/149‑1 (MQ=255) gcctgcctGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTTCTCAATCACCAAGTGACCAGGCGTGGCTGAAGCCATGCTGCGCGTGc > 1:4751300/1‑149 (MQ=255) gcctgcctGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGc < 2:4280350/149‑1 (MQ=255) tgcctgcTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑GTTTTACTCAATAAACAAGTGACCTGGCTTGGCGTCAGCCTTGCAGCGCTTGccag > 2:4351068/1‑146 (MQ=255) tgctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTAAATCACCCAGTGACCAGGCGTGGCGTCAGCCGTGCTGCGCTTGCAgggggc > 2:1366004/1‑147 (MQ=255) tgctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTAATAAATCACCAAGTTACCTGGCTTTGCTTCAGCCATGCTGCGCTTGCAAGGGtc > 2:4043274/1‑149 (MQ=255) ttCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGt < 2:2212587/149‑1 (MQ=255) cACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTa < 1:4550251/149‑1 (MQ=255) cACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTAAATCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTGCTGGTTa > 2:5161830/1‑149 (MQ=255) cTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAAc < 1:3035530/149‑1 (MQ=255) gTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCgg < 1:3474831/149‑1 (MQ=255) gTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTAATAATTAACCAAGTGAACAGGCTTTGCATCAGCCTTGCTGCGCATGCAAGGGTCTTCTGGGTAACCgg > 2:4470489/1‑149 (MQ=255) tCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGt < 1:2392379/149‑1 (MQ=255) gTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑GTTTTTATCAATAACCAAGTTACCAGGCTTGGCGTAAGCCCAGCTGGGCTTGGAATGGTGTTCTGGTTAAACCGTCt > 1:3988580/1‑149 (MQ=255) cGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTaa < 1:1062028/149‑1 (MQ=255) cGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTaa < 1:2531365/149‑1 (MQ=255) gctgctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTTATAATTAAACAAGTTAACATGGGTGGGTTCAGCCGTGATGCCCGGGCATGGGTGTTCTGGGTAACCGGTGGGTaat > 1:1469164/1‑148 (MQ=255) gctgctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCTCCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAg < 2:4831789/149‑1 (MQ=255) ctgctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCAAGTGTCCAGGCGTGGCGTCAGCCGTGCTGCGCTTGCAGGGGTCTTCGGGTTAACCGGTCTGTAAgg > 2:4164026/1‑149 (MQ=255) ctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGc < 1:3537128/149‑1 (MQ=255) tCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑GTTTTAATAATTAACCATGTGACCTGGCGTGGCTTGAGCCTTGCTGCGCTTGCCTGGGTGTTCTGGTTAAACGGTCTGTTAGGAGCa > 2:1346187/1‑149 (MQ=255) cAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCAc < 2:1090323/149‑1 (MQ=255) ttttGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTAAATCACCAAGTGACCAGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCGTCTGGTTAACCGGTCTGTAAGGAGCACTGACg > 2:3245575/1‑149 (MQ=255) tttGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACgg < 2:158884/149‑1 (MQ=255) tGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TGTTTAATCATTCACCATGTGTCCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTTGTTAACCGGGCTGTAATGAGCCCTGACggca > 2:1920380/1‑147 (MQ=255) gATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATg < 1:772401/149‑1 (MQ=255) gATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATg < 1:2602070/149‑1 (MQ=255) aTTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATgg < 2:2763496/149‑1 (MQ=255) tttttGTACTGGCCTCAATCGCAGAAAACACGCAGGCACGCGGGCGA‑TTTTTAAGCAAACAACAAGAGACCAGGCTTTGCAAAAGCCGTGCTGCGCATGCCTGGGTGTTCGGGTTAAACGGTCAGTAAGTAGCCCTGAAGGAATAAGGa > 2:3756164/1‑149 (MQ=255) ttttGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGaa < 2:5133274/149‑1 (MQ=255) ttttGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGaa < 1:3376657/149‑1 (MQ=255) tttGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGaaa < 1:1382745/149‑1 (MQ=255) tACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCt < 1:590193/149‑1 (MQ=255) aCTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCtt < 1:1481639/149‑1 (MQ=255) tGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGc < 1:4457914/149‑1 (MQ=255) ggCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑GTTTTAAACAATCACCCAGTGAACGGGCTTGGCTTCGGCCCTGGTGCGCTTGGGTGTGTGGTCTGGTTAAACGGTGTGGATGGAGCACAGAAGGGATATTGAAAATCTTggg > 1:1243560/1‑147 (MQ=255) gCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGctc < 2:1699938/149‑1 (MQ=255) ccTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGctct < 1:1566091/149‑1 (MQ=255) cAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTAATCATTCACCCTGTGACCTGGCGTGGCTTCAGCCTTGCTGCGCATGCATGGGTCTTCTTGTTTAACGGTCTTTAAGGATCACTTACGGAATATTGAAAATATTTctaggac > 2:2023132/1‑144 (MQ=255) aTCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTTCTCATTAACCATGTGACCTGGCTTGGCTTCACCCGTGCTTCGCGTGCATGGGTCTTCTGGTTAACCCGTCGGTAAGGAGCACAGACGGAAGATGGCAAATCTTGCTCAgacga > 2:2114460/1‑149 (MQ=255) aTCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTgacga < 2:745417/149‑1 (MQ=255) aTCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTgacga < 1:1860213/149‑1 (MQ=255) tCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTgacgac < 2:1964995/149‑1 (MQ=255) cAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGtt < 1:2277171/149‑1 (MQ=255) gAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTAt < 2:5024612/149‑1 (MQ=255) gAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCGTCAGCCATGCTGCGCTTGCATGGGGCTTCTGGTTAACCGGTCTGTAAGGAGCCCTGACGGCATATGGAAAAACTTGCTCTGACGACGGTAt > 2:1709116/1‑149 (MQ=255) gAAAACACGCTGGCACGCGGGCGT‑TTTTTACACAATAACCCAGTGACCAGGCTTGGGTTAAGCCGTGCTGCGCGTGCAGGGGTGTTCTGGGTAAACGGTCTGTAAGGCGCACTGACGGACTTTTGAAAATCTTGCTGAGAAGACGTTAt > 2:124011/1‑149 (MQ=255) gAAAACACGCTGGCACGCGGGCGT‑TTTTTAAACATTCACCATGTGACCTGGCGTGGGTTCAGCCTTGCTGCGCGTGCATGGGTGTTCTGGTTAACCGGTCTGTAAGGATCACTGACGGAATATGGAAAATATTTCTCAGACGACGTTAt > 2:2660718/1‑149 (MQ=255) aaCACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATtgc < 1:4391034/149‑1 (MQ=255) acacGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATtgct < 1:790571/149‑1 (MQ=255) acacGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATtgct < 1:4945681/149‑1 (MQ=255) acacGCTGGCACGCGGGCGT‑GTTTTAATCATTAACCAAGTGACCAGGGGTGGCTTGAGCCGTGGTTGGCGTGCCTGGGTCTTCTGGTTTACCCGGCTGTTAGGGGCACAGAAGGAAAATGGGAAAACATTCTGTGACGAAGTTAtttgt > 2:949171/1‑146 (MQ=255) cTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCtt < 2:4764285/149‑1 (MQ=255) tGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCttt < 2:4696545/149‑1 (MQ=255) cgcgGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCg < 2:1220443/149‑1 (MQ=255) gcgGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCgg < 2:4711813/149‑1 (MQ=255) cgGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGgc < 2:4237796/149‑1 (MQ=255) t‑tttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTg > 2:3748867/1‑149 (MQ=255) tttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTgg > 1:3759767/1‑149 (MQ=255) tttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTgg > 1:998875/1‑149 (MQ=255) tACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgt > 1:4149593/1‑149 (MQ=255) | TGTGGCCCTGTTTCTGCCCTTTGGGCGCGCGCAAGAACTTTCTCTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGT‑TTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTT > CP009273/2597931‑2598227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |