| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,439,422 | G→T | 7.9% | I26I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,439,422 | 0 | G | T | 7.9% | 696.1 / 3.0 | 284 | I26I (ATC→ATA) | rplF | 50S ribosomal subunit protein L6 |
| Reads supporting (aligned to +/- strand): ref base G (115/127); new base T (21/19); total (138/146) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 284 total aligned reads displayed.
CATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGAT > CP009273/3439275‑3439567 | cATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGa < 2:4735685/149‑1 (MQ=255) gTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGtaa > 2:4070154/1‑149 (MQ=255) gTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGtaa < 1:1948875/149‑1 (MQ=255) gcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAcc < 2:50343/149‑1 (MQ=255) gcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAcc < 1:3993955/149‑1 (MQ=255) gcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAcc > 2:3008424/1‑149 (MQ=255) cagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCt < 1:3410108/149‑1 (MQ=255) agGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTg < 2:737930/149‑1 (MQ=255) ggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGAc < 1:4005526/149‑1 (MQ=255) gcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTg < 1:1089101/149‑1 (MQ=255) ggTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑Attt < 1:1760964/149‑1 (MQ=255) gTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑Atttt > 1:2551251/1‑149 (MQ=255) tACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑Attttt < 1:275389/149‑1 (MQ=255) aCCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTa < 2:1772243/149‑1 (MQ=255) cAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACg < 1:738869/149‑1 (MQ=255) gCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTc < 1:3573168/149‑1 (MQ=255) tgtgCCCAACCGTCTGCGTGACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAAc > 2:2566096/1‑149 (MQ=255) tgtgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAAc > 2:3949356/1‑149 (MQ=255) cccAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCg > 2:5012095/1‑149 (MQ=255) aaCCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCa < 2:2312737/149‑1 (MQ=255) aCCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAg > 2:3253072/1‑149 (MQ=255) aCCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTACATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATAGTAATAACCTGACCGGTG‑ATTTTTAAGTCAACGCCGGCAg > 2:34775/1‑149 (MQ=255) cGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑a > 2:4263865/1‑149 (MQ=255) cGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑a > 1:4242602/1‑149 (MQ=255) cGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑a > 2:1649625/1‑149 (MQ=255) gCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑aacaac < 1:3466921/149‑1 (MQ=255) gCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑aacaac > 2:5079134/1‑149 (MQ=255) gCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCGTTGATCGTAATAACCAGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑aacaac > 1:1846811/1‑149 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACTTTGATAGTAATAACCTTACCGGTT‑TTTTTTTAGTAAACCCCCGCAGG‑AAAAACGAc > 1:102552/1‑149 (MQ=255) aCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑TTTTTTAAGTCAACGCCGGCAGG‑AACAACCACCg > 1:3376390/1‑149 (MQ=255) aCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAAAAACCAGACCCTTG‑ATTTTTAAGTCAACGCCGGCAGG‑AACAACGAccc > 1:2802819/1‑148 (MQ=255) caacACGGGGACCTAAGGTCTGGTTTTTATATGCTTGTTTAACTTCAACAGAATCGTTGAGAGTACGTGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCGTTT‑ATTTTTACGTCAACGCCGGCAGT‑AACAACGACCGGt < 2:251354/146‑1 (MQ=255) aTCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAATAACCAGACCGTTG‑ATTTTTAAGTCAACGCCGGCAGG‑AACAACGACCGGTg > 2:474142/1‑149 (MQ=255) aCGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAACTGACCGTTG‑ATTTTTAAGTCAACGCCGGCAGG‑AACAACGACCGGTGCtt > 1:4711448/1‑149 (MQ=255) gcgGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCTGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACGGTTT‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTa < 2:5192724/149‑1 (MQ=255) ggACCTAAGGTCAGTTTTTTATCTGAATTTTTAACTTAAAAAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACTTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGc < 2:1993532/149‑1 (MQ=255) gACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCa > 2:3992703/1‑149 (MQ=255) ccGAAGGTCTGGGTATTATCTGAATGTTTAACTTCAACAGCTTCGTTGAGAGTACGTGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAac < 2:3116138/149‑1 (MQ=255) gAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATCGTAAAAAACAGAACGTTG‑ATTTTTAAGTAAACGCCGGCAGG‑AACAACGACCGGTGGTTTTGCAacac > 1:4956133/1‑149 (MQ=255) aGGTCTGGTTATTATCTGAATTTTTAACTACAACAGCATCTTTGAGAGTACGAGTCAGCTCGCCGTTTTTACATTTGATCGTAATAACCTGACCTTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACga < 1:3819161/149‑1 (MQ=255) ggTCTGGTTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGTGTACGAGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTTACCGTTT‑ATTTTTACGGCACCGCCGGCAGT‑AACAACGACCGGTGCTTTAGCAACACgag < 1:2819529/149‑1 (MQ=255) ggTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTTTCGTAATAAACAGACCGTTG‑ATTTTTTCGTCAAAGCCGGCAGG‑AACAACCACCGGTGCTTTAGCAACACcag > 1:4516796/1‑149 (MQ=255) ggTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACATTGATAGTAATAAACAGACCGTTT‑ATTTTTAAGTAAAAGCCGGCACG‑AACAAAGACCCGTGGTTTAGCAAAACgat > 1:120115/1‑148 (MQ=255) gTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACgaga > 2:4624478/1‑149 (MQ=255) aGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAt > 2:2965081/1‑149 (MQ=255) aGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACGTTGTTCGTAATAAACAGACCCTTT‑ATTTTTTAGTGAAAGCCGGCAGG‑AAAAAACACCCGGGGTTTATCAACACGAGACaa > 1:461167/1‑148 (MQ=255) gggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAtt < 2:4465431/149‑1 (MQ=255) gggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAATAACCAGACCGTTG‑ATTTTTACGTCAACGCCCGCAGG‑AACAACCACCCGTGCTTTAGCAACACGAGACaat > 1:2130218/1‑147 (MQ=255) gggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACTTTGATAGTAATAACCGGACCGGTT‑ATTTTTTAGTCAACCCCGGCCGG‑AACAACCACCCGTGCGTTATACAAACGAGACaat > 1:4450018/1‑147 (MQ=255) ttattatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAtttt < 2:4138102/148‑1 (MQ=255) gTATTATCTGCTTGTTTAACTTCAACAGCATGGTTGAGTGTACGAGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAtttt < 2:4921124/149‑1 (MQ=255) ttttatCTTGATGTTTAAGTTCAACAGCATGGTTGAGTGTAGGTGTAAGCTCGCGTTTTTTACCTTTGATGTTAATAACCTGACGGTTG‑TTTTTTAGGTCAAGGCGGGCTGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAttttt < 2:4340732/147‑1 (MQ=255) tattatCTGCATGTTTAACTTCACCAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAttttt < 2:4225420/149‑1 (MQ=255) attatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCATTGATCGGAAAAACCTGACCCGTG‑ATTTTTACGTCAACGCCCGCAGG‑AACAACGACCGGTGCGTTAGCACCACCCGACAattttt > 2:3120770/1‑149 (MQ=255) attatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTTAATTTTTTAGTAATAAACAGAACGTTG‑TTTTTTTAGTGAAAGCCCGCCGGCAAAAACACCCGGT‑CTTTTTCAACACCAGACAattttt > 1:890203/1‑149 (MQ=255) tatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGATACAttttttac > 2:3409915/1‑147 (MQ=255) tCTGCTTGTTTAAATTCAACAGCATCTTTGAGATTCCGTGTCAGCGCGCCTTTTTTACATTTTATCTTAATAACCTGACGTTTT‑TTTTTAACTTAAACGCCGCCTGT‑AACCACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctc < 2:879811/149‑1 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCAGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctc > 2:1950957/1‑149 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATAGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCCGCAGG‑AACAACGACCCGTGCTTTAGCAAAACGAGACATTTTTtactc > 2:2661303/1‑149 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACATTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAAG‑AACAACCACCGGTGCTTTAGCAACACGAGACATTTTTtcctc > 2:3514590/1‑149 (MQ=255) cTGCTTTTTTAACTTCAACTGAATCGTTGAGAGTACGTGGCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCTTTG‑ATTTTTCCGTCAACGCCGGCAGG‑AACCACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctcc < 2:4809405/149‑1 (MQ=255) cTGCATTTTTAACTACACCAGCATCGTGGTGAGTACGAGTCAGCTCGCCTTTTTTACCTTTGATCTTAATAACCGGACCGTTG‑ATTTTTACGTCAACGCCGGCAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctcc < 1:4999145/149‑1 (MQ=255) cTGAATTTTTAACTACAACCGCATCTTTGATAGTACGCGTCTGCTCGCCTTTTTTACCTTTGTTCGTAATAACCTGACGTTTT‑TTTTTTCCGTCACCGCCGGCAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctcc < 1:2664374/149‑1 (MQ=255) tGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCg > 2:2426421/1‑149 (MQ=255) tGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCGTTGATCGGAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCCGCAGG‑AACAACGACCGGTGCTTTAGCAACACCCGACCATTTTTACACCg > 1:4192637/1‑149 (MQ=255) gCATTTTTAACTTCAACAGAATCGTTGAGAGTACGCGTCAGCTCGCCGTTTTTACATTTGATCGTAATAACCTGACCGTTT‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGa < 1:2381117/149‑1 (MQ=255) gCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTACTACGa > 2:2767407/1‑149 (MQ=255) tGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGCCCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTa < 2:3814851/149‑1 (MQ=255) tGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTACTCCGATTa > 1:3841016/1‑149 (MQ=255) gTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAACCTGACCGTTG‑ATTTTTACGACAACGCCGGCCGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAg < 1:1267514/149‑1 (MQ=255) tttAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCTGACCGTTG‑ATTTTTAAGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAgg > 2:3239968/1‑149 (MQ=255) ttAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATAGTTATAACCTGACCGTTG‑ATTTTTAAGTCAACGCCGGCAGG‑AACAACGACCCGTGCGTTATCAACACGAGACATTTTTTGCGCCGATTAGGc > 1:1492323/1‑149 (MQ=255) tAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCt < 2:431078/149‑1 (MQ=255) tAACTACAACATCATCGTTGATATTACTAGTCAGCTAGCATTTTTTACCTTCTATAGTAATAACCTTACCTTTT‑ATTTTTACGTAAACACCGGCAGG‑AAAAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCt < 2:4863460/149‑1 (MQ=255) aaCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTa > 1:865951/1‑149 (MQ=255) aCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATAGTAATAACCTGACCGTTT‑ATTTTTAAGTCAACCCCCGCACG‑AACAACGACCCGTGCGTTAGCAACAAGAGACATTTTTTCATCCGATTAGGCTAc > 1:2890831/1‑149 (MQ=255) ttCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGGAATAACCTGACCGTTG‑ATTTTTACGTCAACCCCGGCACG‑AACAACGACCGGTGCGTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTAcct > 2:1369158/1‑147 (MQ=255) atcatcATGGTTGAGTGTACTAGTCAGCTCGGCTTTTTTACCTTTTATCTTATTAACCTGACGTTTG‑TTTTTTTGGTAAACGCCGGAAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGc < 1:2102069/144‑1 (MQ=255) aGCATCGTTGAGTGTACGAGTCAGCTCGCCGTTTTTACATTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGa < 1:1608573/149‑1 (MQ=255) aGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGa < 1:2965081/149‑1 (MQ=255) aTCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTGGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATaa < 2:1996074/149‑1 (MQ=255) tCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCGTTTATCGTAATAAAATTACCCTTG‑ATTTTTTCGTCAACGCCCGCAGG‑AACAACCACCCGTGCTTTATCAACACGAGACCTTTTTTACTACGATTATGCTACGTAGCAGATAAt > 1:714651/1‑149 (MQ=255) tgTTGATATTACGAGTCAGCTCGCCTTTTTAACCTTTTATCTTAATAACCTGACCGTTT‑ATTTTCACGACAACGCCGGCAGC‑AACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAtt < 1:4044628/148‑1 (MQ=255) ttttgagTACGAGTCCGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCGTTT‑ATTTTTCCGACACCGCCGGCCGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTc < 1:549361/145‑1 (MQ=255) gTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGccacc < 2:2454514/149‑1 (MQ=255) gTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGGAATAACCTGACCGTTG‑ATTTTTAAGTCCACGCCCGCAGG‑AACAACGACCGGGGCTATAGCAACACGAGACATTTTTTACTCCGAATAGGCTACGTAGCAGATAATTTAGccacc > 2:575763/1‑149 (MQ=255) tACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCGTTAGCAACACGAGACATTTTTTCCTCCGCTTAGGCTACGTAGCAGATAATTTCGccacca > 2:1139242/1‑149 (MQ=255) agacAGCTCGCCTTTTTTACCTTTGATCTTAATAACCTGACCGTTG‑ATTTTTCCGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAc < 1:1892856/146‑1 (MQ=255) aGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAc < 2:1246438/149‑1 (MQ=255) aGTCAGCTCGCCGTTTTTACATTTGATCGTAATAACCTGACATTTT‑ATTTTTCCGAAAACGCCGGCAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAc < 1:2025358/149‑1 (MQ=255) gTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTAAGTCAACGCCGGCAGG‑AACAACGACCCGTGCTTTAGCAACACGAGACAATTTTTACTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAATAcc > 2:2790570/1‑149 (MQ=255) gCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑ACCAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 2:4020773/149‑1 (MQ=255) tCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTg < 2:3883310/149‑1 (MQ=255) tttttACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcgc > 1:2985193/1‑149 (MQ=255) ttttACCTTTTATCGAAATAACCTGACGTTTT‑ATTTTTACGACAACGCCGGCAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCt < 1:2194731/149‑1 (MQ=255) ttACCTTGGATGGTAATTAGCTGA‑CGTTGTATTTTTAAGTCAACGCGGGCAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCATGACCAGCCTGGCGCGCTGc < 2:4493012/149‑1 (MQ=255) aCCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCAc > 2:2261692/1‑149 (MQ=255) cTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGa < 2:809301/149‑1 (MQ=255) tttGATCTTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGAt < 1:3407906/149‑1 (MQ=255) tttGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGAt > 1:2220471/1‑149 (MQ=255) | CATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTG‑ATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGAT > CP009273/3439275‑3439567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |