| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,439,443 | G→T | 6.9% | I19I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,439,443 | 0 | G | T | 6.9% | 764.0 / 8.7 | 301 | I19I (ATC→ATA) | rplF | 50S ribosomal subunit protein L6 |
| Reads supporting (aligned to +/- strand): ref base G (148/115); new base T (8/30); total (156/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.65e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 308 total aligned reads displayed.
GCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAG > CP009273/3439295‑3439591 | gcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTg > 2:2526888/1‑149 (MQ=255) cAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACg < 2:2085593/149‑1 (MQ=255) cAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACg < 1:738869/149‑1 (MQ=255) gCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTc < 1:3573168/149‑1 (MQ=255) cTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCaa < 1:4210363/149‑1 (MQ=255) tgtgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTAACTTTGATCGTAATAAACTGACCGTTTATTTTTACGTCAAc > 2:3949337/1‑149 (MQ=255) gtgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACg > 2:3400490/1‑149 (MQ=255) gCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGcc > 2:3872309/1‑149 (MQ=255) cccAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCg < 1:3024223/149‑1 (MQ=255) cccAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCg > 2:5012100/1‑149 (MQ=255) cGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑a > 2:4263865/1‑149 (MQ=255) gCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑aacaac < 1:3466921/149‑1 (MQ=255) gCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑aacaac > 1:1673664/1‑149 (MQ=255) gCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑aacaac > 2:5079134/1‑149 (MQ=255) gTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGa > 2:1486927/1‑149 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGTTTTTATATGCATGTTTAACTTCAACAGAATCGTTGAGTGTACGAGTCAGCTCGCCTT‑TTTTACCTTTGATCGTAATAACCTGACCTTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGAc < 1:1884551/149‑1 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTAACTTTGATAGTAATAACCTTACCGGTTTTTTTTTAGTAAACCCCCGCAGG‑AAAAACGAc > 1:102552/1‑149 (MQ=255) aCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTTATCGTAATAACCAGACCGTTGATTTTTAAGTCAACGCCGGCCGG‑TACAACGACCg > 1:3376436/1‑149 (MQ=255) cACGCGGACCTAAGTTCTGGGTATTTTCTGCATTTTTAACTTCAACAGAATCGTTGAGAGTACGAGTCTGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCt < 2:4574478/149‑1 (MQ=255) aCGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTTCCTTTTATCGTAATAAACAGACCGTTGTTTTTTAAGTCAACGCCCGCACG‑AACAACCAACCGTGcgt > 1:4016649/1‑147 (MQ=255) aCGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCCACGCCGGCAGG‑AACAACGACCGGTGCtt > 1:2104283/1‑149 (MQ=255) aCGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGcat > 1:4733327/1‑147 (MQ=255) gcgGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCTGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACGGTTTATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTa < 2:5192724/149‑1 (MQ=255) ggACCTAAGGTCAGTTTTTTATCTGAATTTTTAACTTAAAAAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACTTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGc < 2:1993532/149‑1 (MQ=255) ggACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGc > 1:2588584/1‑149 (MQ=255) gACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCa > 2:3992703/1‑149 (MQ=255) gcGAAGGTCAGTGTTTTATCTGCATGTTTAACTTCAACCTCATCGTTGTGAGTACGAGTCAGCTCGCCGT‑TTTTACATTTTTTCGTACTAACTGGACCGTTGTTTTTTACGTCAACGCCGGCTGT‑AACAACGACCGGTGCTTTAGCAac < 2:3116980/148‑1 (MQ=255) gAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTTACGTTT‑TTCGTAATAAACTGAACCTTGATTTTTTAGTCAAACCCCGCAGG‑TACAACCACCCGTGGTGTAGCCacac > 1:3933961/1‑149 (MQ=255) gAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATAGTAATAAACTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACCACCCGTGCTTTAGCAacac > 1:2883709/1‑149 (MQ=255) gAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTTATCGTAAAAAACAGAACGTTGATTTTTAAGTAAACGCCGGCAGG‑AACAACGACCGGTGGTTTTGCAacac > 1:4956133/1‑149 (MQ=255) aGGTCTGGTTATTATCTGAATTTTTAACTACAACAGCATCTTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACATTTGATCGTAATAACCTGACCTTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACga < 1:3819161/149‑1 (MQ=255) ggTCTGGGTTTTTTCTGCATGTTTAACTTCAACAGCATCGTTGAGTGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCTTAATACCCTGACCGTTGTTTTTTCCGTCAACGCCGGCAGG‑AACCACGACCGGTGCTTTAGCAACACgag < 1:2819349/149‑1 (MQ=255) ggTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTTTTCGTAATAAACAGACCGTTGATTTTTTCGTCAAAGCCGGCAGG‑AACAACCACCGGTGCTTTAGCAACACcag > 1:4516796/1‑149 (MQ=255) ggTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACATTGATAGTAATAAACAGACCGTTTATTTTTAAGTAAAAGCCGGCACG‑AACAAAGACCCGTGGTTTAGCAAAACgat > 1:120115/1‑148 (MQ=255) aGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAt > 2:2965184/1‑149 (MQ=255) gggTTTTATCTGCATGTTTAACTTCAACAGCATCGTTGAGCGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTCCGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAtt < 2:3440273/149‑1 (MQ=255) gggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAtt < 2:4465431/149‑1 (MQ=255) ttattatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAtttt < 2:4138102/148‑1 (MQ=255) ttttatCTTGATGTTTAAGTTCAACAGCATGGTTGAGTGTAGGTGTAAGCTCGCGTT‑TTTTACCTTTGATGTTAATAACCTGACGGTTGTTTTTTAGGTCAAGGCGGGCTGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAttttt < 2:4340732/147‑1 (MQ=255) tattatCTGCATGTTTAACTTCACCAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACAttttt < 2:4225420/149‑1 (MQ=255) tattatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTTAAGTTGATCGGAAAAAACAGAACCTTTATTTTTTAGTGAACCCCCGCAGG‑AACAAACACCCGTGCGTTATCAACACCAGACAatttt > 1:2682798/1‑149 (MQ=255) attatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTTAATTTTTTAGTAATAAACAGAACGTTGTTTTTTTAGTGAAAGCCCGCCGGCAAAAACACCCGGT‑CTTTTTCAACACCAGACAattttt > 1:890203/1‑149 (MQ=255) atCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGTTCGTAATAACCTGACCGGTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTGTAGCAACACGAGACCTTTTTtccg > 2:4924649/1‑148 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctc > 2:1950957/1‑149 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTGATCGTAATAACCTGACCGTTGATTTTTACGTAAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGCCATTTTTtcctc > 1:341461/1‑149 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACATTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAAG‑AACAACCACCGGTGCTTTAGCAACACGAGACATTTTTtcctc > 2:3514590/1‑149 (MQ=255) cTGCATTTTTAACTACACCAGCATCGTGGTGAGTACGAGTCAGCTCGCCTT‑TTTTACCTTTGATCTTAATAACCGGACCGTTGATTTTTACGTCAACGCCGGCAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctcc < 1:4999145/149‑1 (MQ=255) cTGCATGTTTAACTTCAACAGCATCGTTTTGAGTAGTAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctcc < 2:4810187/149‑1 (MQ=255) gCATTTTTAACTTCAACAGAATCGTTGAGAGTACGCGTCAGCTCGCCGT‑TTTTACATTTGATCGTAATAACCTGACCGTTTATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGa < 1:2381117/149‑1 (MQ=255) gCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTACTACGa > 2:2767407/1‑149 (MQ=255) aTGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGAtt > 2:856745/1‑149 (MQ=255) tGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGCCCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTa < 2:3814851/149‑1 (MQ=255) tGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTTATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTACTCCGATTa > 1:3841016/1‑149 (MQ=255) tGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTTATCGTAATAACCTGAACGTTGTTTTTTACGTCAAAGCCGGCAGG‑AACAACGACCGGTGCTTTATCAACACGAGACAATTTTTCCTCCGATTa > 1:4251826/1‑149 (MQ=255) gTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTACGACAACGCCGGCCGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAg < 1:1267514/149‑1 (MQ=255) tttAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAgg > 2:3240805/1‑149 (MQ=255) ttAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTTCCATTGATAGTAATAACCAGTCCGTTGATTTTTACGTCAACCCCGGCAGG‑AACAACGACCGGTGCGTTAGCAACAAGCGACAATTTTTCGTCCGATTAggg > 1:4107957/1‑148 (MQ=255) tAACTTCAACCGCATCGTTGTGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCt < 1:4266159/149‑1 (MQ=255) tAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCt < 2:431078/149‑1 (MQ=255) aaCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTa > 1:865951/1‑149 (MQ=255) ttCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTACCTTTGATCGGAATAACCTGACCGTTGATTTTTACGTCAACCCCGGCACG‑AACAACGACCGGTGCGTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTAcct > 2:1369158/1‑147 (MQ=255) aaCAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAAACTGACCGTTGATTTTTAAGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGc > 2:2815748/1‑149 (MQ=255) aGCATCGTTGAGTGTACGAGTCAGCTCGCCGT‑TTTTACATTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGa < 1:1608573/149‑1 (MQ=255) aTCGTTGAGAGTACGTGTCAGCTCGCCTT‑TTTTACCTTTTATCGTAATAACCTGACCTTTGATTTTTACGTCAACGCGGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATaa < 1:2936026/149‑1 (MQ=255) aTCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATaa > 2:4756802/1‑149 (MQ=255) aTCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTGGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATaa < 2:1996074/149‑1 (MQ=255) gTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTAAACGCCGGCAGG‑CACAACGACCGGTGCTTTATCAACACGAGACATTTTTTCCGCCGATTAGGCTACGTAGCAGATAAttt > 1:4703955/1‑149 (MQ=255) gTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGccacc < 2:2454346/149‑1 (MQ=255) gTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTATCAACACGAGACATTTTTTACTCCGATTAGGCTACGTAGCCGATAATTTAGccacc > 2:3163730/1‑149 (MQ=255) gTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGGAATAACCTGACCGTTGATTTTTAAGTCCACGCCCGCAGG‑AACAACGACCGGGGCTATAGCAACACGAGACATTTTTTACTCCGAATAGGCTACGTAGCAGATAATTTAGccacc > 2:575763/1‑149 (MQ=255) tACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCGTTAGCAACACGAGACATTTTTTCCTCCGCTTAGGCTACGTAGCAGATAATTTCGccacca > 2:1139242/1‑149 (MQ=255) gAGTCAGCTCGCCGT‑TTTTACCTTAGATCGTAAAAACCTGACCGTTGATTTTTACGTCAACGCCGGCCGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGa < 1:1893746/149‑1 (MQ=255) aGTCAGCTCGCCGT‑TTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAc < 1:2025151/149‑1 (MQ=255) aGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAc < 2:1246438/149‑1 (MQ=255) cAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATGTTTACGTCAACGCCGGCAGG‑AACCACGACCGGTGCTTTAGCAACACGAGACATTTTGTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAg < 2:4711945/149‑1 (MQ=255) gCTCGCCTT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGAAAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 1:2770032/149‑1 (MQ=255) gCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑ACCAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 2:4020773/149‑1 (MQ=255) cTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAAAGACCGGTGCTTTATCAACACGAGACATTTTTTCCTCCGATTAGGCTAAGTAGCAGATAATTTAGCCACCAACACCATCCt > 2:2287730/1‑149 (MQ=255) cGCCGT‑TTTTACCTTTTATCTTAATACCCTGACCTTTTATTTTTACGTCAACGCCGGCAGT‑AACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTgg < 1:611538/149‑1 (MQ=255) t‑ttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcgc > 1:2985193/1‑149 (MQ=255) ttttACCTTTTATCGAAATAACCTGACGTTTTATTTTTACGACAACGCCGGCAGT‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCt < 1:2194731/149‑1 (MQ=255) ttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGc < 2:771510/149‑1 (MQ=255) aCCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCAc > 2:4890538/1‑149 (MQ=255) ccTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACg > 2:3099/1‑149 (MQ=255) tttGATCGTAATAACCTGACCTTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGAt < 1:1122322/149‑1 (MQ=255) aTCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGt > 1:317556/1‑149 (MQ=255) tacccTGACCGTTGATTTTTCCGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAaca < 1:4119465/146‑1 (MQ=255) aaCCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAacac > 2:1670474/1‑149 (MQ=255) aCCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACAcc > 2:2424644/1‑149 (MQ=255) aCCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACAcc > 1:147321/1‑149 (MQ=255) cTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑ACCAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCtt < 2:1069299/149‑1 (MQ=255) cTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCtt > 1:3737978/1‑149 (MQ=255) cTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCtt > 2:2588074/1‑149 (MQ=255) tgccctttGTTTTTTCCGTCACCGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCttt < 1:3120770/143‑1 (MQ=255) tGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCttt > 2:4104436/1‑149 (MQ=255) tGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCttt < 2:2669457/149‑1 (MQ=255) ccGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTaga > 2:214771/1‑149 (MQ=255) cGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTagag < 1:5079136/149‑1 (MQ=255) gATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAg > 1:705601/1‑149 (MQ=255) gATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAg > 1:1771648/1‑149 (MQ=255) | GCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGG‑AACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAG > CP009273/3439295‑3439591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |