| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,214 | T→G | 10.1% | intergenic (+72/+80) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,214 | 0 | T | G | 10.1% | 378.3 / 2.9 | 170 | intergenic (+72/+80) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base T (31/116); new base G (5/18); total (36/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 176 total aligned reads displayed.
ACAAACCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAT > CP009273/3498066‑3498362 | aaaCCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTc < 1:3936899/149‑1 (MQ=255) aaaCCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATGTTACATCccgtcc‑gtga > 2:371849/1‑147 (MQ=255) aCCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTccc > 2:410175/1‑149 (MQ=255) ccGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTcccc < 1:124065/149‑1 (MQ=255) ccGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTcccc < 1:4009969/149‑1 (MQ=255) gTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCa < 2:767049/149‑1 (MQ=255) gCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCAcc < 1:5112086/149‑1 (MQ=255) gTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTaa < 2:4846583/149‑1 (MQ=255) tctcCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCACAcccacac > 2:3012730/1‑145 (MQ=255) ctcCGAACTCTTCTGCCGCGCAAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAAcc < 1:3646097/149‑1 (MQ=255) tcCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTGCCCCCCCCCAAAccc > 2:2888682/1‑149 (MQ=255) tcCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAAccc < 1:2257944/149‑1 (MQ=255) cGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTGCCCGCACCCAAAcccac > 2:1634117/1‑147 (MQ=255) aCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTc‑c < 1:1013767/149‑1 (MQ=255) aCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTc‑c < 1:2567713/149‑1 (MQ=255) ctctTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTc‑cc < 2:682744/149‑1 (MQ=255) ctctTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTGCCCCCACCCCAAaccccaacc > 2:2179694/1‑143 (MQ=38) tctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCaaa < 1:4894447/149‑1 (MQ=255) tctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCaaa < 1:2552748/149‑1 (MQ=255) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAg < 1:2835617/149‑1 (MQ=255) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAg < 1:3326968/149‑1 (MQ=255) ccGCGCCAATCGCATCACCTTAACTATTGATAATAAAATACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAgggg < 1:6393/149‑1 (MQ=255) ccGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAgggg < 1:5944/149‑1 (MQ=255) cgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGa < 2:4754532/149‑1 (MQ=255) cgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGa < 2:769753/149‑1 (MQ=255) ccACTCGCATCACCTTAACTCTTGATAAGAACAGACATTACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTGTACATCCCGTAC‑GGTCCCCTCCCCCTCACCCTCTC‑CCCAAAGGGGCGAgg < 2:1336872/149‑1 (MQ=38) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTGCCCCCCCCCCAACCCACAC‑CCCCAAGGGGCGCggg > 2:4478573/1‑149 (MQ=38) aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCACACCAAAACCCCCAC‑CCCCAACgggggggggg > 2:3888355/1‑149 (MQ=38) aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAAGTTTACATCCCGTAC‑GTTCCCCGCACCCGAACCCGCTC‑CCCCAAGGGGCgggggg > 2:3888325/1‑149 (MQ=38) tCGCATCACCTTAACTATTTATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑Ac < 1:1728642/149‑1 (MQ=255) tCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑Ac < 2:4619868/149‑1 (MQ=255) tCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑Ac < 1:505225/149‑1 (MQ=255) cGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑Acc < 2:2610480/149‑1 (MQ=255) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTGCCCGCACCCCAACACACTCACCCAACAGGGCggggggccg > 2:1510881/1‑146 (MQ=37) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTGCCCACACCCCAACCCACAC‑ACCCCATGGGCGCGGGG‑GCCg > 2:1509558/1‑149 (MQ=37) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTAGCCCCACCCACAACCCATA‑CCCAAACGGGGGCGGGG‑Gcccg > 2:607588/1‑147 (MQ=25) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGtt < 2:4428329/149‑1 (MQ=255) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTGCCCAACACCCAAAACCCAAA‑CCCAAAGGGGGGGGGGG‑CCCGtc > 1:2463087/1‑148 (MQ=25) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTc < 1:4707194/149‑1 (MQ=255) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTc < 1:973110/149‑1 (MQ=255) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTACCCACACCCAAAACCACAA‑CCCCAAACGGCGAGGGGTACCGta > 2:1974077/1‑148 (MQ=37) cACCCTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCa < 1:3658875/149‑1 (MQ=255) ccTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTACCCACACCCAAAACCACAA‑CCCAAAAGGGCGAGGGG‑Acccgtaagt > 2:4263349/1‑142 (MQ=37) tAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCCCACCCCAAACCACTC‑CCCACCAGGGCGCGGGG‑CCCGGTGAGttag > 1:3435361/1‑146 (MQ=37) aaCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCACCCCCAAACCCACAC‑CCCAAAGGGGCGAGGGG‑ACCCTTCAATAcag > 2:5141993/1‑147 (MQ=38) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGaa < 2:3431034/149‑1 (MQ=255) aTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAAtt < 1:4194239/149‑1 (MQ=255) aTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTGCCCACACCCAAACCCAAAA‑CCCCCAAGGGCGAGGGG‑ACCGGTCAGTAAggcagt > 1:3871410/1‑145 (MQ=25) tGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAACGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTa < 2:4054320/149‑1 (MQ=255) gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAg < 1:733969/149‑1 (MQ=255) taataaAAGACATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCt < 2:984319/149‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCtt < 2:433079/149‑1 (MQ=255) taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGACTTTTACATCCCGTAC‑GTTGCCCTCACCCCAACCCACTC‑CCCACCGGGGCGCGGGG‑ACCGGTCCGTACGGACtttttggtgc > 2:4935187/1‑142 (MQ=37) taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCGCACCCAAACCCCCTC‑CCCCAAGGGGCGAGGGG‑ACCGGTCAGTAAGGAATTTATCTTgt > 1:3814269/1‑148 (MQ=38) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGt < 1:2673475/149‑1 (MQ=255) aCATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGc < 2:509968/149‑1 (MQ=255) aCATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTACCCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGc < 2:3503071/149‑1 (MQ=255) ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTACCCTCACCCAAACCCGCTC‑CCCCAAGGGGCGCGGGG‑ACCGTTCAGTACGGAAATTATCTTGTCGGTGCGAt > 2:2900071/1‑149 (MQ=38) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATcc < 1:4166992/149‑1 (MQ=255) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTC‑CCCAACGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATcc < 1:4165810/149‑1 (MQ=255) cGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGc < 1:2218573/149‑1 (MQ=255) gTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTTAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCa < 2:2350242/149‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 2:2230891/149‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAAGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 1:2412008/149‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGATGAATTTTACATCCCGTAC‑GTTCCCCTAACCCTACCCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTATCTTGACGGTGCTATCCAGCAt < 2:2363072/149‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCAGCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTACCCCTCTC‑CCCAAAGGGGCGAAGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 1:2411978/149‑1 (MQ=255) tAGGCCGGAGAAGAGGCGCCAGCATCGCCTCCGGCGATGCTGGCGCGTTGAATTTTACCTCCCGTAC‑GGTCCCCTCCCCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 2:938650/149‑1 (MQ=38) aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAtt < 1:4096933/149‑1 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTC‑CCCCAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaaa < 1:1555896/149‑1 (MQ=255) ccGGAGAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaaa < 2:1214383/149‑1 (MQ=255) aggcgcCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCaa < 1:4447836/147‑1 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCaa < 1:4447867/149‑1 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAAt < 1:2374307/149‑1 (MQ=255) aGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 2:5147976/149‑1 (MQ=255) aGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 2:3662941/149‑1 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAACGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCa < 2:338934/149‑1 (MQ=255) catcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCAc < 1:2343872/149‑1 (MQ=255) catcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCAc < 2:4149774/149‑1 (MQ=255) tcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAAt < 2:850467/149‑1 (MQ=255) cGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATcc < 1:1201773/149‑1 (MQ=255) gCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgc < 1:5067041/149‑1 (MQ=255) gCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAc < 2:2278805/149‑1 (MQ=255) cTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCCCAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAcc < 2:1755220/149‑1 (MQ=255) cTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAcc < 2:1852163/149‑1 (MQ=255) tGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCg < 1:3424940/149‑1 (MQ=255) cgcgTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtct < 1:4265294/149‑1 (MQ=255) cgcgTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtct < 2:1562996/149‑1 (MQ=255) gTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCACAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCtt < 1:2900585/149‑1 (MQ=255) ttGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTc < 2:4030237/149‑1 (MQ=255) tACATCCCGTAC‑GTTCCCCTCCCCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAACTCCGCAGCACCGTCTCTTCACCGCTGc < 2:2461170/149‑1 (MQ=255) tCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 2:3572471/149‑1 (MQ=255) ccGTAC‑GTTCCCCTCACCCTCACCCTCTC‑CCCAACGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCg < 1:1421948/149‑1 (MQ=255) gTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCggg < 1:535986/149‑1 (MQ=255) gTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCggg < 1:1974077/149‑1 (MQ=255) tAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGGTCAGTACGGAATTTAGCTTGAAGGTGCTATCCAGCATTAAATACTGGCAAAACTCTCACGCAAAAAACGCAGCACCCTCACATAACCCCAGCGATTAGGGt > 2:1525751/1‑149 (MQ=37) aC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGtt < 1:860399/149‑1 (MQ=255) gTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTaa < 1:922619/149‑1 (MQ=255) ttCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACTTAATTTAGCTTGACGGTTCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGTTTAAt < 2:4527696/149‑1 (MQ=255) ttCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 2:3459560/149‑1 (MQ=255) ttCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGGTAAt > 2:1062436/1‑149 (MQ=255) | ACAAACCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAT > CP009273/3498066‑3498362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |