| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,239 | A→C | 7.3% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,239 | 0 | A | C | 7.3% | 571.3 / 13.1 | 184 | intergenic (+97/+55) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base A (38/128); new base C (15/3); total (53/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.26e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 189 total aligned reads displayed.
TCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTGT > CP009273/3498093‑3498387 | tctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCaaa < 1:2552750/149‑1 (MQ=255)tctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCaaa < 1:2552671/149‑1 (MQ=255)tctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCaaa < 1:4894447/149‑1 (MQ=255) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAg < 1:2835617/149‑1 (MQ=255) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAg < 1:3326968/149‑1 (MQ=255) ccGCGCCAATCGCATCACCTTAACTATTGATAATAAAATACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAgggg < 1:6393/149‑1 (MQ=255) gcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAg < 1:1750034/149‑1 (MQ=255) gcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAg < 2:453497/149‑1 (MQ=255) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTGCCCCCCCCCCAACCCACACCCCCAAGGGGCGCggg > 2:4478573/1‑149 (MQ=38) aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCACACCAAAACCCCCACCCCCAACgggggggggg > 2:3888355/1‑149 (MQ=38) aTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑a < 2:4217357/149‑1 (MQ=255) tCGCATCACCTTAACTATTTATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑Ac < 1:1728642/149‑1 (MQ=255) tCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑Ac < 1:505225/149‑1 (MQ=255) cGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑Acc < 2:2610480/149‑1 (MQ=255) cGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑Acc < 1:3819357/149‑1 (MQ=255) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCg < 2:1284142/149‑1 (MQ=255) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTGCCCACACCCCAACCCACACACCCCATGGGCGCGGGG‑GCCg > 2:1509558/1‑149 (MQ=37) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTAGCCCCACCCACAACCCATACCCAAACGGGGGCGGGG‑Gcccg > 2:607588/1‑147 (MQ=25) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGtt < 2:1816961/149‑1 (MQ=255) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTGCCCAACACCCAAAACCCAAACCCAAAGGGGGGGGGGG‑CCCGtc > 1:2463087/1‑148 (MQ=25) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTc < 1:4707194/149‑1 (MQ=255) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTc < 1:973110/149‑1 (MQ=255) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTACCCACACCCAAAACCACAACCCCAAACGGCGAGGGGTACCGta > 2:1974077/1‑148 (MQ=37) cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCa < 1:3658921/149‑1 (MQ=255) ccTTAACTATGGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCCCACCCAAAACCACAACCCCAACGGGCGCGGGG‑Tcccggaaat > 2:4265294/1‑142 (MQ=37) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTGCCCACACCCCAACCCACAACCCCCACGGGCGCGGGG‑GCCGGGCAGGACggca > 2:4521474/1‑147 (MQ=25) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGaa < 2:3431034/149‑1 (MQ=255) aatagagaataaAAGACAATAACCGTAGGCCGGATAAGATGCTCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCAAAACGGGCGAGGGG‑ACCGTTCAGTACGGAAt < 2:4653073/142‑1 (MQ=39) tGATAATAACAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCCTCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTa < 2:4052535/149‑1 (MQ=255) gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAg < 1:733969/149‑1 (MQ=255) taataaAAGACATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCt < 2:984319/149‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTACCCACACCCGAAACCACACACCCCACGGGCGAGGGG‑ACCCGTAAGTACGGCAATTAGcgt > 2:5106093/1‑147 (MQ=25) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTGCCCACAACCAAACCCCCACCCCCAAAGGGGGGGGGG‑CCCCGGCAGTACCGAAATTAGCGTg > 2:4918371/1‑149 (MQ=25) taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGACTTTTACATCCCGTAC‑GTTGCCCTCACCCCAACCCACTCCCCACCGGGGCGCGGGG‑ACCGGTCCGTACGGACtttttggtgc > 2:4935187/1‑142 (MQ=37) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGt < 1:2673475/149‑1 (MQ=255) aCATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTACCCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGc < 2:3503071/149‑1 (MQ=255) ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTACCCTCACCCAAACCCGCTCCCCCAAGGGGCGCGGGG‑ACCGTTCAGTACGGAAATTATCTTGTCGGTGCGAt > 2:2900071/1‑149 (MQ=38) tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATc < 2:679438/149‑1 (MQ=255) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATcc < 1:4167009/149‑1 (MQ=255) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTCCCCAACGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATcc < 1:4165810/149‑1 (MQ=255) cGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGc < 1:2218573/149‑1 (MQ=255) gTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTTAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCa < 2:2350242/149‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 2:2230891/149‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAAGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 1:2412003/149‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGATGAATTTTACATCCCGTAC‑GTTCCCCTAACCCTACCCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTATCTTGACGGTGCTATCCAGCAt < 2:2363072/149‑1 (MQ=255) aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAtt < 1:4274586/149‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAAt < 2:1143111/149‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTg < 2:3745501/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 1:1289206/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 1:2398948/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 1:4056736/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCGCACCCAAAACCAAACCCCAAACGGGCGAGGGG‑ACCCTTCAGTAAGGAATTTATATTTACGGTGCTATCCAGCATAAAATaaatgc > 2:860399/1‑144 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCaa < 1:4447867/149‑1 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTAGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCaa < 2:4417633/149‑1 (MQ=255) cgcCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTCCCCAACGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATAc < 1:1446228/149‑1 (MQ=255) aGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 2:5147976/149‑1 (MQ=255) aGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 2:3662941/149‑1 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAACGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCa < 2:338934/149‑1 (MQ=255) catcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCAc < 1:2343872/149‑1 (MQ=255) catcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCAc < 2:4149774/149‑1 (MQ=255) cGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATcc < 1:1201773/149‑1 (MQ=255) gCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAc < 2:2278805/149‑1 (MQ=255) cTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCCCAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAcc < 2:1755220/149‑1 (MQ=255) tGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCg < 1:3424940/149‑1 (MQ=255) cgcgTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtct < 1:4263349/149‑1 (MQ=255) gcgTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtctc < 2:1366942/149‑1 (MQ=255) gTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCACAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCtt < 1:2900585/149‑1 (MQ=255) tACATCCCGTAC‑GTTCCCCTCCCCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAACTCCGCAGCACCGTCTCTTCACCGCTGc < 2:2461170/149‑1 (MQ=255) tACATCCCGTAC‑GGTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGTATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATTCTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGc < 2:838453/149‑1 (MQ=255) aTCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAt < 1:410175/149‑1 (MQ=255) tCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 2:3572471/149‑1 (MQ=255) gTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCggg < 1:1974077/149‑1 (MQ=255) gTAC‑GGACCCCCCACCCTCACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCggg < 1:540955/149‑1 (MQ=255) tAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGt < 1:3602639/149‑1 (MQ=255) tAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGGTCAGTACGGAATTTAGCTTGAAGGTGCTATCCAGCATTAAATACTGGCAAAACTCTCACGCAAAAAACGCAGCACCCTCACATAACCCCAGCGATTAGGGt > 2:1525751/1‑149 (MQ=37) tAC‑GTTCCCCTCACCCAAACCCACAACCCAAAGGGGCGAGGGG‑ACCCTTCAGTACGGAAATTATCTTGACGGTGCTATCCAGCAATAAATACTGGCAAAAATCTCACGCAAAAAACGCAGCACCCTCTCATCACCGCTGCGATTCGGGt > 2:1525990/1‑149 (MQ=255) aC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGtt < 1:860399/149‑1 (MQ=255) gtCCCCTCACCCTACCCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 2:3459406/148‑1 (MQ=255) cccTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCg > 1:4425082/1‑149 (MQ=255) ccTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGa > 2:5189607/1‑149 (MQ=255) ccTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGa < 1:2888682/149‑1 (MQ=255) ccTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGa > 2:5186821/1‑149 (MQ=255) ccTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGa > 2:4804535/1‑149 (MQ=255) tCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt < 1:2764693/149‑1 (MQ=255) tCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt > 1:1598826/1‑149 (MQ=255) tCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt > 2:1581026/1‑149 (MQ=255) cACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATc > 1:5162132/1‑149 (MQ=255) cccTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTATTGCGAATCGc > 1:2301300/1‑149 (MQ=255) cccTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGc > 1:2792470/1‑149 (MQ=255) tAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcaca < 1:2440315/149‑1 (MQ=255) cccTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAGTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATg > 2:3998799/1‑149 (MQ=255) tctcCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTc < 1:2067665/149‑1 (MQ=255) tcCCCACAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTg < 2:120780/149‑1 (MQ=255) tcCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGCCGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTg < 2:5019087/149‑1 (MQ=255) ccccAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACACTGTTCTGa > 1:4593505/1‑149 (MQ=255) ccccAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGa < 1:4521313/149‑1 (MQ=255) cccAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAt < 1:3839889/149‑1 (MQ=255) cccAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAt > 2:825056/1‑149 (MQ=255) ccAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAtt < 2:646932/149‑1 (MQ=255) cAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtg < 1:74981/149‑1 (MQ=255) | TCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG‑ACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTGT > CP009273/3498093‑3498387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |