| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,623,050 | G→T | 12.6% | D148Y (GAC→TAC) | rspR → | transcriptional repressor for rspAB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,623,050 | 0 | G | T | 12.6% | 682.2 / 54.6 | 244 | D148Y (GAC→TAC) | rspR | transcriptional repressor for rspAB |
| Reads supporting (aligned to +/- strand): ref base G (99/110); new base T (15/19); total (114/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 247 total aligned reads displayed.
CGCGTCGGGCGGCGAGCATGATTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTGATGGCGAT > CP009273/1622901‑1623199 | cGGGCGGCGAGCATGATTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCTACTGt > 2:571799/1‑150 (MQ=255) ggcggcGAGCATGATTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCa < 2:2046819/150‑1 (MQ=255) ggcgAGCATGAGTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACt < 2:1206614/150‑1 (MQ=255) cgAGCATGATTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTgg > 1:3763261/1‑150 (MQ=255) gAGCATGATTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGc > 1:3281425/1‑150 (MQ=255) tGATTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTggg < 1:1298487/150‑1 (MQ=255) aTTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGAt > 1:2908491/1‑150 (MQ=255) ccGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCa < 2:1910371/150‑1 (MQ=255) aaaGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTg > 2:3163614/1‑150 (MQ=255) aaaGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCACTg < 2:3526700/150‑1 (MQ=255) ccAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGaa > 2:3719458/1‑150 (MQ=255) ccAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGaa > 1:1615734/1‑150 (MQ=255) cAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAAc < 1:2025157/150‑1 (MQ=255) cAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAAc < 1:911970/150‑1 (MQ=255) cAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAAc > 2:251352/1‑150 (MQ=255) gTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCt > 2:3636462/1‑150 (MQ=255) tGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTg < 1:1067889/150‑1 (MQ=255) tGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTg < 2:3281425/150‑1 (MQ=255) tGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTg > 1:1148854/1‑150 (MQ=255) gCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGa < 2:1025190/150‑1 (MQ=255) tATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGaaa < 2:226490/150‑1 (MQ=255) gAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGtt > 1:3489183/1‑150 (MQ=255) cAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGAt > 2:2039763/1‑150 (MQ=255) aaaaTCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATc > 2:3473498/1‑150 (MQ=255) aaaaTCTACACCAGCAACGAATTGCAATTGAGCGCAAGCAACTGGATTA‑TTTTTTTGAACTTTATTACAACTTCCATCAACTCCTGACGCAGTTTGCCGACTGTCAACTGGCGTGGTATACCATTGAGAACCTGAAAGCGACCGTTGATc < 2:3090739/150‑1 (MQ=255) attCTTCACCAGCAACGCATTGCCTTTGAGCGAAAGCAATTGTATTT‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCTGTTTGCCGACTTTCAACTGGGGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATcgc < 1:2878087/148‑1 (MQ=255) aaTCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATcgc > 1:1003384/1‑150 (MQ=255) agcTTCACCCGCAACGCATTGCCATTGAGCGCAAGCAACTGGTTGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGTTTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATcgcg < 2:533236/148‑1 (MQ=255) tCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGt > 2:966198/1‑150 (MQ=255) ttCACCCGCAACGCATTGCAATTGAGCGAAAGAAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTTACGCAGATTGCCGACTGTCAACTGGCGTGGTATACCATTTAGAACCTGAAAGCGACCGTTGATCGCGTgc < 2:923084/150‑1 (MQ=255) ccAGCACCGCATTGCCATTGAGCGCAAGCAACTGGATTA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCta < 2:4273133/150‑1 (MQ=255) ccAGCAACGCATGGCCATTGAGCGCAAGCAACTGTATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTTAGAACCTGAAAGCGACCGTTGATCGCGTGCGCta < 2:3832678/150‑1 (MQ=255) caaGCAACGCATTGCCTTGGAGCGCAAGCAACTGGATTT‑TTTTTTTGAACTTTATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGTATACCATTTATAACCTGAAAGCGACCGTTGATCGCGTGCGCta < 2:2956076/148‑1 (MQ=255) ccGCATTGCCATTGAGCGCACGCAACTGGATTA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGTTTGCCGACTGTCACCTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAg < 2:3462624/149‑1 (MQ=255) acccATTGCCATTGAGCGAAAGCAACTGGATTC‑TTTTTTTGAACTTGATGACAACTTCCATCAACACCTGACGAATATTGCCGACTGTCAACGGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAg < 2:1270585/147‑1 (MQ=255) cGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGt > 2:1996985/1‑150 (MQ=255) cATTGCCATTGAGCGAAAGAAACTGGATTA‑TTTTTTTGAACTTTTTGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACGGGCGTGGGATACCATTGAGACCCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGttt < 1:3181178/150‑1 (MQ=255) aTTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTc > 1:389276/1‑150 (MQ=255) gCCATTGAGCGCAAGCAACTGTATGT‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGTATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGAc < 2:3837262/150‑1 (MQ=255) cATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCa > 1:2624825/1‑150 (MQ=255) gAGCGAAAGAAACTGTTTTT‑TTTTTTTGAACTTTATGACAACTTCAATCAACTCCTGACGCATTTTGCATACTGTCAACTGGCGTGGTATACCATTGATAACCTTAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGtt < 1:3904887/150‑1 (MQ=255) aGCGCAAGCACCTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCTTTGAGAACCTGAAAGCGACCGTGGATCGCGTGCGCTATATGAGTTTCGACCACGttt < 2:2837522/150‑1 (MQ=255) aGCGAAAGCAAGTGGATTT‑TTTTTTTGAACTTGATGACAACTACCATCAACTCCTGACGCAGATTGCCTAGTGTAAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGttt < 1:3613638/150‑1 (MQ=255) cgcAAGCAACTGGATGATTTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCCCGTTtc > 1:1890341/1‑150 (MQ=255) agcaaCTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTccac > 1:175421/1‑150 (MQ=255) gcacCTGGATTA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTccacc < 2:778683/150‑1 (MQ=255) caaCTGTATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACGGTCAACGGGCGTGGGATACCATTGAGACCCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTccacca < 1:2097935/150‑1 (MQ=255) caaCTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTccacca > 1:1884465/1‑150 (MQ=255) aCTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGa > 2:208314/1‑150 (MQ=255) ctttatgt‑tTTTTTTTAACTTGTTTAAAACTTCCAACAACTCCTGACGCTGATTGCCGAGTGTCAACTGGGGTGGTATACATTTTATAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGaa < 1:231443/146‑1 (MQ=255) tgtttta‑tTTTTTTGAACTTTATTACAACTTCCATCAACTCCTGACGCTGATTGCCGACTGTCAACGGGCGTGGTATACCTTTGATAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGaaa < 1:2377564/144‑1 (MQ=255) tGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGaaa > 2:1146321/1‑150 (MQ=255) tGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGaaa < 2:1294947/150‑1 (MQ=255) ggATGA‑TTTTTTTTAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAAt < 2:3506480/150‑1 (MQ=255) ggattttttttttGAACTTGATGACAACTTCCATCAACTCCTGACTCAGATTGCCGACTGTCAACTGGCGTGGTATACCATTGATAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAAt < 2:3506467/144‑1 (MQ=255) gatga‑tTTTTTTGACCTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATg < 2:2476848/150‑1 (MQ=255) gatga‑tTTTTTTGAACTTGATGACAACTTCCATCACCTCCTGACGCAGTTTGCCGACTGTCAACTGGCGTGGGATACCATTGCGAACCTGAACGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATg < 2:3437027/150‑1 (MQ=255) tgttttttttGAACTTGATGACAACTTCAATCAACTCCTGACGCAGTTTGCCGACTGTCACGTGGCGTGGTATACCTTTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCt < 1:1652803/147‑1 (MQ=255) a‑tTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGt > 2:2153059/1‑150 (MQ=255) ttttttTAAATTTATTACAACTTCCATCAACTCCTGACGCATATTGCCTACTGTAAACGGGCGTGGGATACAATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTa < 1:2798552/150‑1 (MQ=255) tttttGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTAc > 2:1492078/1‑150 (MQ=255) ttttGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACg > 1:3159968/1‑150 (MQ=255) tttGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGc > 2:1689151/1‑150 (MQ=255) tttGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGc > 2:2622990/1‑150 (MQ=255) ttGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGcc > 1:983717/1‑150 (MQ=255) cTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCAt > 1:1404575/1‑150 (MQ=255) cTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACACCAGCAt > 1:1214792/1‑150 (MQ=255) ttGATGACAACTTCCATCAACTCCTGACGCAGATTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATc > 2:4120439/1‑150 (MQ=255) ttGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATc < 2:2863065/150‑1 (MQ=255) ttattaaaaCTCCAATCACCTCGTGAGGAAGTTTCCCCACTTTCAAGTGGGGTGGTAAACATTTTAGAACGTGAACGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCt < 1:3281627/143‑1 (MQ=255) tgttgaCAACTTCCATCAACTCCTTACGCATATTGCCGACTGTCAACTGGGGTGGTATACCATTTATAACGTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCt < 2:2371211/147‑1 (MQ=255) tgatgaCAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCt > 1:4188596/1‑150 (MQ=255) tgatgaCAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCt > 2:1994911/1‑150 (MQ=255) tatgaCAACTTCCATAAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCtt < 1:4327073/149‑1 (MQ=255) aCAACTTCAATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAACGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGata < 2:676704/150‑1 (MQ=255) cAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGatat < 2:3763476/150‑1 (MQ=255) aaCTTCCATCAACCCCGGACGCAGATTGCCGCCTGTCAACGGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATAtt < 1:728385/150‑1 (MQ=255) aCTTCCATCAACTCCTGACGCAGATTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATAttt > 2:415501/1‑150 (MQ=255) ctaccATAAACTCCTGACGCTGATTGCCGACTGTAACCGGGCGTGTTATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATAtttt < 2:769517/147‑1 (MQ=255) cgtCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATAtttt < 2:2850940/148‑1 (MQ=255) tCCATCAACTCCTGACGCAGATTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTtct < 1:571799/150‑1 (MQ=255) cATCAACTCCTGACGCAGATTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTctct < 2:180907/150‑1 (MQ=255) cATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTctct > 1:2968328/1‑150 (MQ=255) cATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTctct < 2:1884465/150‑1 (MQ=255) aTCAACTCCTGCCGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTg < 2:3987280/150‑1 (MQ=255) tCAACTCCTGACGCAGATTGCCGACTGACAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGc < 2:3378223/150‑1 (MQ=255) aaCTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGccc > 1:283057/1‑150 (MQ=255) cTCCTGACGCAGTTTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTg < 2:918833/150‑1 (MQ=255) cTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTg > 1:248966/1‑150 (MQ=255) tCCTGACGCAGATTGCCTACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGc > 2:4050855/1‑150 (MQ=255) tGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCaaa > 2:1103307/1‑150 (MQ=255) gACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCaaaa > 1:3062434/1‑150 (MQ=255) cGCAGTTTGCCGACTGTCAACTGGCGTGGGATACCATTGATAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAAc < 1:3461641/150‑1 (MQ=255) gaaGATGGCCTACTGTAACCTGGCGTGTGAACCCATTTAGAACCTTAACGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACg < 1:2201438/148‑1 (MQ=255) gCAGATTGCCGACTGTCAACGGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACg < 2:2178551/150‑1 (MQ=255) cAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGt < 1:3971156/150‑1 (MQ=255) tgtgtGCCGACTGTAACCGGGGGTGGGATACCTTTGAGAACCTGACAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTg < 1:840386/146‑1 (MQ=255) aGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTg > 2:1768589/1‑150 (MQ=255) gCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTGATGGc < 2:4309066/150‑1 (MQ=255) cGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTGATGGCGa < 2:3159968/150‑1 (MQ=255) | CGCGTCGGGCGGCGAGCATGATTACCGAAAGCCAGTGCTATCAACTGGAACAAAATCTTCACCAGCAACGCATTGCCATTGAGCGCAAGCAACTGGATGA‑TTTTTTTGAACTTGATGACAACTTCCATCAACTCCTGACGCAGATTGCCGACTGTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTGATGGCGAT > CP009273/1622901‑1623199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |