| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,628,207 | G→A | 95.0% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,628,207 | 0 | G | A | 95.0% | 405.8 / 19.0 | 199 | G110E (GGA→GAA) | pinQ | Qin prophage; putative site‑specific recombinase |
| Reads supporting (aligned to +/- strand): ref base G (6/4); new base A (102/87); total (108/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
Only 100 of 202 total aligned reads displayed.
AATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGG > CP009273/1628060‑1628353 | aTGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGaaaa < 1:2613523/150‑1 (MQ=17) aTCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatga > 1:1709909/1‑150 (MQ=17) tCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatgat > 2:3356194/1‑150 (MQ=17) tCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatgat < 1:2265441/150‑1 (MQ=17) tCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatgat < 1:2690632/150‑1 (MQ=17) tCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatgat < 1:3529841/150‑1 (MQ=17) aaTTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGc > 1:2253349/1‑150 (MQ=17) attgattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCa > 1:4145336/1‑150 (MQ=17) ttgattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCaa < 2:3585531/150‑1 (MQ=17) tgattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAg < 1:4026550/150‑1 (MQ=17) tgattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAg < 1:597191/150‑1 (MQ=17) gattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGt < 1:1970209/150‑1 (MQ=17) gattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGt > 1:954708/1‑150 (MQ=17) gattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGt < 1:3617747/150‑1 (MQ=17) attgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTa < 1:4243094/150‑1 (MQ=17) attgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTa > 2:1291823/1‑150 (MQ=17) ttgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTaa < 1:1857605/150‑1 (MQ=17) ttgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTaa < 1:3095151/150‑1 (MQ=17) gtgACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAAtt < 1:900233/150‑1 (MQ=17) gtgACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAAtt > 1:1582782/1‑150 (MQ=17) gACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTc > 2:2641155/1‑150 (MQ=32) gACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTc > 2:2769793/1‑150 (MQ=17) aCAAAACTGGATCGCCTTTGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTca < 1:2839941/150‑1 (MQ=17) cAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTcag > 2:945976/1‑150 (MQ=17) aaCTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTcagcag < 1:3275458/150‑1 (MQ=17) aaCTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTcagcag > 1:333401/1‑150 (MQ=17) aCTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGt < 2:568979/150‑1 (MQ=17) cTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGTCCTGACCAGTCCAACAGAAAAAATGATTATGCAAGTAATTTCAGCAGTc > 2:2875985/1‑150 (MQ=12) ggATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGc > 2:2809560/1‑150 (MQ=17) gATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCt < 2:621279/150‑1 (MQ=17) aTCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTg < 2:1082384/150‑1 (MQ=17) tCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGa < 2:2709182/150‑1 (MQ=17) tCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGa > 1:309062/1‑150 (MQ=17) gCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAt < 2:1079774/150‑1 (MQ=17) gCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAt < 1:865918/150‑1 (MQ=17) gCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAt < 1:2201668/150‑1 (MQ=17) ccTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAtt > 1:2029392/1‑150 (MQ=17) ggTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGaa < 2:3658021/150‑1 (MQ=17) gTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAc > 1:2107389/1‑150 (MQ=17) gTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACgag < 1:756673/150‑1 (MQ=17) gTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACgag < 1:2691871/150‑1 (MQ=17) tAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACgaga > 2:3134250/1‑150 (MQ=17) aTGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGAcc < 2:3646623/150‑1 (MQ=32) tGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCt < 1:3204505/150‑1 (MQ=17) tGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCt < 2:1297973/150‑1 (MQ=17) tGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCt > 1:766871/1‑150 (MQ=17) cAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCttt > 2:1455261/1‑150 (MQ=17) cAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCttt < 2:824947/150‑1 (MQ=17) aaTGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCtttt > 1:1105746/1‑150 (MQ=17) aTGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTa < 1:2873715/150‑1 (MQ=32) aTGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTa < 2:15902/150‑1 (MQ=17) atatCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTg > 1:1245077/1‑150 (MQ=17) atatCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTg > 2:2511307/1‑150 (MQ=17) tCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAAc < 1:750065/150‑1 (MQ=17) cAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACg < 1:2172939/150‑1 (MQ=17) aaaaCAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCAGTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACt < 2:3213109/150‑1 (MQ=17) aaaCAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTc > 1:870241/1‑150 (MQ=17) tGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCg > 2:2378073/1‑150 (MQ=17) tGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCg > 2:187697/1‑150 (MQ=17) ggAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCgg < 1:2506869/150‑1 (MQ=17) aacaacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGa > 2:1138760/1‑150 (MQ=32) caacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATa > 2:1468172/1‑150 (MQ=17) tGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTaa > 1:678687/1‑150 (MQ=17) tGACCGAAACAGGTATCAGAGTGCAGTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTaa < 2:302197/150‑1 (MQ=17) aCCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAaga < 1:179298/150‑1 (MQ=17) aCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCcgc > 1:3315669/1‑150 (MQ=17) aCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCcgc > 2:3543520/1‑150 (MQ=17) gTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCgcggcg > 2:3741216/1‑150 (MQ=32) aTCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCa > 2:4078323/1‑150 (MQ=32) aTCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCa < 2:1709909/150‑1 (MQ=17) aTCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCa < 1:2970252/150‑1 (MQ=17) agTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGaa < 1:2641155/150‑1 (MQ=32) agTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGaa > 2:2593290/1‑150 (MQ=17) tGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAAc < 1:2769793/150‑1 (MQ=17) cATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGt < 1:32566/150‑1 (MQ=17) aTTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGtt > 2:129492/1‑150 (MQ=17) aTTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGtt > 2:1911444/1‑150 (MQ=17) ttGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGttt > 1:2135890/1‑150 (MQ=17) tGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGtttt < 1:4359878/150‑1 (MQ=17) gCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTACGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTg > 1:3407143/1‑150 (MQ=17) ttAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGt > 2:1648605/1‑150 (MQ=32) tAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTc < 2:3043527/150‑1 (MQ=17) tAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTACGGGATAGTTAGAGCCCGCGGCGCAGGGAAACGGTTTGGTc > 1:2550520/1‑150 (MQ=255) tAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACACATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGACACGTTTTGGTc > 1:2775569/1‑150 (MQ=12) aGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCg > 2:389384/1‑150 (MQ=17) aTTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAATTTAACGAGACCTTATACGTGAACTCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGaca > 1:3970999/1‑149 (MQ=11) aTTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTa < 1:4203455/150‑1 (MQ=17) ttGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTaa > 2:794295/1‑150 (MQ=17) gacctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAAt < 2:2191276/150‑1 (MQ=17) acctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATg < 2:3462421/150‑1 (MQ=17) tgaccAGTACAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaag < 2:2969104/150‑1 (MQ=17) gaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTAATTGAAAGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAAAGTTTTGGTCGACCACCTGTGTTAAATgaaga < 1:1336976/150‑1 (MQ=255) accAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCATTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCAGTGTTAAATgaagaa > 1:2934073/1‑150 (MQ=12) ccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAAc > 2:4156934/1‑150 (MQ=17) ccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTACGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGGGTTAAATGAAGAAc > 1:4077090/1‑150 (MQ=12) cAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACa < 2:2259947/150‑1 (MQ=17) cAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAAc > 2:1828863/1‑150 (MQ=17) cAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAAc < 1:2386972/150‑1 (MQ=17) cAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAgg > 2:1100726/1‑150 (MQ=17) cAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAgg > 2:1101869/1‑150 (MQ=17) | AATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGG > CP009273/1628060‑1628353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |