| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,707 | C→A | 16.1% | intergenic (‑24/+284) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,707 | 0 | C | A | 16.1% | 416.3 / 7.6 | 199 | intergenic (‑24/+284) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base C (31/107); new base A (27/4); total (88/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.18e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 203 total aligned reads displayed.
ATGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCG > CP009273/2170558‑2170855 | aTGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTc < 1:3931481/150‑1 (MQ=255) tGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCg < 1:68567/150‑1 (MQ=255) tGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCg < 1:2495455/150‑1 (MQ=255) gCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGa < 1:587036/150‑1 (MQ=255) aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGAtt < 2:2034091/150‑1 (MQ=255) aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGAtt < 1:1425126/150‑1 (MQ=255) tGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCaa < 1:3121849/150‑1 (MQ=255) ggCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTaaaa > 1:4300432/1‑150 (MQ=255) gCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCaaaa < 1:3815552/150‑1 (MQ=255) gCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCaaaa < 2:2160898/150‑1 (MQ=255) cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAat < 1:2077791/150‑1 (MQ=255) cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAat < 1:3429503/150‑1 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAata < 2:70003/150‑1 (MQ=255) gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAatat < 1:3779200/150‑1 (MQ=255) gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAatat < 2:1418018/150‑1 (MQ=255) cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAAtata < 2:3208805/150‑1 (MQ=255) ggTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATaa < 1:528340/150‑1 (MQ=255) gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAAt < 2:4275174/150‑1 (MQ=255) tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATg < 2:494736/150‑1 (MQ=255) tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGT‑GTGGTTTTGATTTCAAAATATAATg > 1:892431/1‑150 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGaa < 1:4232332/150‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGaaa < 1:392124/150‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTCAAAATATAATTAAatt > 2:1697004/1‑150 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAattatt < 1:3021804/150‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTg < 2:1909909/150‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTg < 1:1463304/150‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTg < 2:239962/150‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGAATTTCAAAAATTATTAAAAtttttttt > 1:3720255/1‑148 (MQ=255) ttGCATCGTTTAGAGATTGTTAATATTGAATGCCTGAACCTCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGttt < 2:1162512/150‑1 (MQ=255) ttGAATCGTTTCGAGATTGTGAATATTGAATTCCGTAACCGCATAACCGCCGAGCTGTTCGTTGTTCAGCATCTGCTTTTTCGATACCACGTTCATTTTCATATCCTGTCGT‑TTGTTTTAGATTTCAAAATATAATTAAATTATTTGttt < 1:2263480/150‑1 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTATATTTAAAAAAATAATAAAAAAAtttttttt > 1:3319944/1‑150 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTGGATTTCAAAAAATAAATAAATTATtttttttt > 2:1119086/1‑150 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTAAAAATATAATGAAATTATTTGTTTTTAAata > 2:1772703/1‑150 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCTATTTCAAAATATAATGAAATTTTTTTTTTTTTAata > 1:1724997/1‑150 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAatat < 2:1706476/150‑1 (MQ=255) ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATc < 1:2308078/150‑1 (MQ=255) gtCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATc < 1:1556197/149‑1 (MQ=255) cGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTCGATTTAAAAATATAATTTAATTAATTTTTTTTAAatataca > 2:3075640/1‑147 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGCTTTCAAAATATAATTAAATTATTTTTTTTTAAATTTagag > 2:2705708/1‑150 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgag‑a < 2:3317504/150‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTAAAAAAATAATGAAATTATTTTTTTTTAAATATAgag‑a > 2:4198817/1‑150 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGAATTGAAAAAAAAAATAAATTATTTTTTTTTAAATATAGAG‑aaaa > 2:3399254/1‑150 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAAc < 2:2486686/150‑1 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAAc < 2:3720598/150‑1 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTTGATTTAAAAAAATAAATTAATTAATTTTTTTTAATTATAGAG‑ATaaag > 1:3135745/1‑148 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATTAAAATATTTTTTTTTAAATATAGAG‑ATaaag > 2:1403288/1‑148 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACg < 1:4165932/150‑1 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGa < 1:3405943/150‑1 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAGTTTTGAAAAAATAAATAAAATATTTTTTTTTTTATATAGTG‑GTAACGAt > 1:3716891/1‑150 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATc < 2:3172288/150‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATc < 2:2250553/150‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATca < 2:3475352/150‑1 (MQ=255) tGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAAATATTTGTTTTTAAATATAGAG‑AGAACGATCACaaa > 2:2821439/1‑150 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACg < 2:3236417/150‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAGATTTAAAAATATAATTTAATTATTTTTTTTTTAATATAGAG‑ATAAATATaaaaaaaaag > 2:639737/1‑148 (MQ=255) gCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGa < 2:2101935/150‑1 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGGTTTAAAAAAATAAATAAAATTTTTTTTTTTTAATATATAG‑ATAAAGATaaaaaaaaacaccaa > 1:3320505/1‑143 (MQ=255) ccGCATCACCGCCGGGCTGTGGGTTTTTCTGCTTGTGCTTTGTCTATACAACTTAAATTTTAATATCCTGTCTT‑TTGTTTTCTTTTTAAAAATATAATTAATTTTTTTTTTTTTAAATATCGAT‑TTAACTATCACAAAAACGACAATATg < 2:4105296/150‑1 (MQ=255) gCATAACCGCGGCGCTGTGCTTTGTTCAGCTTCTGGTTTGTCTATACCACTTACTTTTTCATATCCTGTCGT‑TTTTTTTCGTTTTCAAAATATATTGAAATTATTTTTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGaa < 2:3872800/150‑1 (MQ=255) gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGT‑GTGTTTTCGATTTAAAAATATAATGAAAATATTTTTTTTTAAATATATAGTATAA‑GATACCAAAAACAACAAAATGaa > 2:2607395/1‑150 (MQ=255) tacccgcggCGCGGTGCTTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTGGT‑TTGTTTTCTATTAAAAAATATAATTAATTTTTTTTTTTTTAAATATCTTG‑ATAACGATAAAAAACACGACAATATGAAAat < 1:4208005/147‑1 (MQ=255) tAACCGCCGGGGTGTGCGTTGTTAAGCTTCTGGTTTGTCTATACCACGTAAATTTTCATATCATGTCGT‑TTGTTTTCTATTTAAAATTATAATTAAATTTTTTTTTTTTAAATTTCTAT‑ATAACGATCACAAAAACGACAATATGAAAat < 2:4041539/150‑1 (MQ=255) tAACCGCCGCGCTGTGGGTTTTTCAGCATTTGCTTTGTCGATACCCCTTAAATTTTCATATCCTGTGTT‑TTGTTTTCGATTAAAAAATATATTTAATTTTTTTTTTTTTAAATATCTAT‑ATAACGATCACAAAAACGACAATATGAAAat < 2:2181803/150‑1 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGGTTTAAAAAAAAAATTTAATTATTTTTTTTTAAATATAGAG‑GTTACGAACACAAAAAAGACAAAATGagaaat > 1:3572728/1‑148 (MQ=255) aaCCGCCGCGCTGTGCGTTGTCCAGCATCTGCTTTGTCTATACCACGTACTTTTAAATATCCTTTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAatt < 2:4335389/150‑1 (MQ=255) aCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGGTTTGGATTTAAAAATATAATTAAAATATTTTTTTTTTAAAATAGAG‑ATGACGATCACAAAAACAACAAAATGAAAaata > 1:2089058/1‑150 (MQ=255) gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTc < 2:1423091/150‑1 (MQ=255) cTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTTTTTTGGATTTAAAAATATAATTAAAATATTTTTTTTTTAAAATAGCG‑ATAAAGATAAAAAAAAACAAAAAATTAAAAATATTAgaggag > 1:2512430/1‑150 (MQ=255) cTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GGGTTTTTTTTTTTTAAATATAATTTAAATATTTTTTTTTTTATATTAAG‑ATAAAGATCAAAAAAAAAACAAAAATAAAaatattattggtg > 1:2944850/1‑143 (MQ=255) tgtgCGTTGTACACCATCTGCTTTTTCCACACCACTAACATTTTCATACCCTGTCTT‑TTTTTTTCTATTAAAAAATATAATTAATTTATTTTTTTTTAAATATCGAG‑AAAACTAACACAAACACGACAATATGAAAATTATTCGAGGAGt < 1:1222719/150‑1 (MQ=255) gtgCGTTGTTCAGCATCTGCTTGGTCGATACCACGTACATTTTCATATCCGGTCGT‑TTGTTTTCGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTg < 2:1351616/150‑1 (MQ=255) tgCGTTGTTCAGCATCTGCTTGGTCGATACCACGTACATTTTCATATCCTGGCGT‑TTTTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGa < 2:1010578/150‑1 (MQ=255) gttCAGCATCTGCTTTGTCTATACCCCGTAAATTTTCATATCCTGTCGT‑TTGTTTTCTATTTCAAAATATAATGAATTTATTTTTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCa < 2:3556273/150‑1 (MQ=255) gttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTTTTTTAGATTTAAAAAAAAAAATAAAATATTTTTTTTTAAATATCGAG‑ATAACGATAACAAAAAAGAAAAAAAGAAAAATATTAGAGGAGTTGAAGGCa > 2:1692722/1‑150 (MQ=255) ttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGATTTAAAAAAAAAATTAAAAAAATTTTTTTTTAATATAGAG‑AAAAACAAAACAAAAAAAACAAAAAGAAAATTAATAGAGGACTGTAAGGCaa > 1:1366525/1‑150 (MQ=255) tCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGATTTAAAAATATAATGAAATTATTTTTTTTTAAATATAGAG‑ATAACGAAAACAAAAAAGACAAAATTAAAATTATTAGTGGGTTGAAAAGCaaa > 2:1595012/1‑150 (MQ=255) tcATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCTT‑TTGTTTTCTATTACAAAATATAATTAAATTATTTTTTTTTAAATATCGAG‑ATAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaa < 2:2997888/149‑1 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTAAAAATATAATTAAATTATTTTTTTTTTAATATCGAG‑ATAAAGATAACAAAAAAGACAATATTAAAATTATTGGAGGAGTGTAAGGGAAAAAAAAGGCCTCCCGaa > 2:3568260/1‑149 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGATTTCAAAATATAATGAAAATATTTTTTTTTAAATATCGAG‑TTAACGATCACAAAAACGACACTATGAAAATTATTAGAGGGGTGAAAGGCCAAAAAACCGCCACCCGag > 2:1933523/1‑149 (MQ=255) aCCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTGATTTGAAAATATAATTAAAATATTTTTTTTTTAATTTAGAG‑TTTACGATAACCAAAACGACAATATTAAAATTTTTAGGGGGGGGTAATGGAAAAAAAAGGCCTGCCGCTTggg > 2:4163751/1‑150 (MQ=255) aCCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGTTTTGAAAAAATAATTTAAATATTTTTTTTTTAATATGGAG‑ATTAACATGACAAAAAAGACCAAATTAAAATTATTTGGGGGGGGTAATGCCAAAAAAAGGCCGCCCGGTTggg > 2:571123/1‑150 (MQ=255) cACTTACTTTTTCTTATCTTGTCTT‑TTTTTTTCTTTTTAAAAATATAATTAATTTTTTTTTTTTTAAATATCTTG‑ATACCGAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 1:1015078/150‑1 (MQ=255) cACGTAAATTTTCATATCCTGTCTT‑TTTTTTTATATTTAAAAATATAATTAAATTATTTTTTTTTAAATATCTAT‑ATAACTAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 1:320681/150‑1 (MQ=255) aCGTACATTTTCATATCCTGTCGT‑GTGTTTTAGCTTTAAAAAAATAATGAAATTATTTGTTTTTTAATATCGAG‑ATTACGATAACAAAAACGACAATATGACAATTATTGGAGGAGTGGAAGGCACAAAAAACGCCACCCGCTAGGGGAg > 2:2767416/1‑150 (MQ=255) cGTACATTTTCATATCCTGTCGTGTTGTTTT‑GATTTAAAAATAAAATGAAAATATTTTTTTTTTAAAATAGAG‑ATAACGATAAAAAAAAACACCAAAATAAAATTATTAGGGGTGTGGAAGGCAAAAAAAACGCCACCCCAGAGGGGAGc > 2:780183/1‑150 (MQ=255) gTACATTTTAAGACCCTGTCTT‑TTGTTTTCGATTCAAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGcc < 2:2212713/150‑1 (MQ=255) cATTTTCATATCCTGTCGT‑GTGTTTTGGATTTACAAAAAAAATTAAAATATTTTTTTTTTAATTTAGAG‑ATAACGATCAAAAAAAATACAATATTAAAATTATTAGTGGGGTTTAAAGGAAAAAAAAAGCCGCCCCCTAGGGGCGCCgga > 2:1187951/1‑148 (MQ=255) tttttCATATCCTGGGGT‑TTTTTTGCGATTTCAAAATATAATTAATTTTTTTTTTTTTAAATTTCGAT‑ATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 1:126072/149‑1 (MQ=255) ttCATACCCTTTCTT‑TTTTTTTCTTTTTAAAAATATAATTAAATTTTTTTTTTTTAAATATCTAT‑ATAACTAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaa < 1:272193/150‑1 (MQ=255) gTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGAAAATATGAAAATTATTCGAGTTGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg > 2:3891515/1‑150 (MQ=255) tgt‑ttgtttTCTATTTAAAAATATAATTAAATTATTTGTTTTTAAATATCGAT‑ATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt < 2:4038696/149‑1 (MQ=255) cGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:3505448/1‑150 (MQ=255) cGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:2076723/1‑150 (MQ=255) gt‑ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 1:945345/1‑150 (MQ=255) t‑ttgtttTCGATATCAAAAAATAATGAAAATATTTGTTTTTAAATAACGAG‑ATAACGATCACAAAAACGACAATATGAAAATAATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCCATATGGAAGCCGTAGCAAAGAGCGAGTGttat > 1:3239958/1‑148 (MQ=255) ttgtttTCTATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 2:3629053/150‑1 (MQ=255) tgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa > 2:3130310/1‑150 (MQ=255) gtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 2:1259770/1‑150 (MQ=255) ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAGATTATTGGTGGAGTGTAAGGCAATAAAACGGCGTCGGGATGGGGTAGCCGTAGCTAGGTGCGGGGGtttgtttggg > 1:2194285/1‑143 (MQ=255) ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAACGTGCGCGTGTTTTTATGcc > 1:1704703/1‑150 (MQ=255) | ATGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCG > CP009273/2170558‑2170855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |