| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,724 | G→T | 36.7% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,724 | 0 | G | T | 36.7% | 230.3 / 60.2 | 180 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (47/60); new base T (40/28); total (89/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.36e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 184 total aligned reads displayed.
TTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAC > CP009273/2170575‑2170873 | tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATg < 1:2195236/150‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGaa < 1:4232469/150‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGaa < 1:1231072/150‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTCAAAATATAATTAAatt > 2:1697004/1‑150 (MQ=255) caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAAATAAaatat > 2:2370889/1‑150 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAattat‑t < 1:3021804/150‑1 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAGATTTAAAAATATTATTAAaatat‑t > 1:622489/1‑150 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTg < 1:1435710/150‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTg < 1:1463306/150‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTg < 2:239962/150‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTg < 1:895905/150‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTg < 2:1909909/150‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGAATTTCAAAAATTATTAAAAtttt‑tttt > 1:3720255/1‑148 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGttt < 2:1162596/150‑1 (MQ=255) ttGCATCGTTTAGAGATTGTTAATATTGAATGCCTGAACCTCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGttt < 2:1162512/150‑1 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTATATTTAAAAAAATAATAAAAAAAt‑ttttttt > 1:3319944/1‑150 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTGGATTTCAAAAAATAAATAAATTAT‑tttttttt > 2:1119086/1‑150 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTCGATTTCAAAATATAATTAAAATAT‑TTTTTTTTAAata > 2:1772866/1‑150 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTAAAAATATAATGAAATTAT‑TTGTTTTTAAata > 2:1772703/1‑150 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTAAAAAAATAAATAAAATATATTTTTTTTaaaa > 1:1724977/1‑149 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAatat < 2:4176620/150‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAatat < 2:1706476/150‑1 (MQ=255) ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATc < 2:3172030/150‑1 (MQ=255) cGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTCGATTTAAAAATATAATTTAATTAA‑TTTTTTTTAAatataca > 2:3075640/1‑147 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTATATTTAAAAAAATAAATAAAAAAT‑TTTTTTTTTAaaataaat > 2:3648954/1‑146 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCgaga < 2:3317504/150‑1 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTTATTTCAAAAAAAAATGAAAATAA‑TTTTTTTTTAatatatatata > 1:229970/1‑143 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGAATTGAAAAAAAAAATAAATTAT‑TTTTTTTTAAATATAGAGaaaa > 2:3399254/1‑150 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATaa < 1:3001535/150‑1 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTTTTTTTTTTTTAAAAAAAAAAATAAAATAA‑TTTTTTTTTTATATATAGATaa > 1:3786297/1‑150 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAAc < 2:3720598/150‑1 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAAc < 2:2486686/150‑1 (MQ=255) gtgAATATTGCATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACg < 1:4166594/150‑1 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTTGATTTAAAAAAATAAATTAATTAA‑TTTTTTTTAATTATAGAGATaaag > 1:3135745/1‑148 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATTAAAATAT‑TTTTTTTTAAATATAGAGATaaag > 2:1403288/1‑148 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGa < 1:3405943/150‑1 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAGTTTTGAAAAAATAAATAAAATAT‑TTTTTTTTTTATATAGTGGTAACGAt > 1:3716891/1‑150 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATc < 2:3172288/150‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATc < 1:1704603/150‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGATATTAT‑TTGTTTTTAAATATCGAGATAACGATca < 2:3479080/150‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATca < 2:1499638/150‑1 (MQ=255) tGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAAATAT‑TTGTTTTTAAATATAGAGAGAACGATCACaaa > 2:2821439/1‑150 (MQ=255) gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATTAAATTAT‑TTTTTTTTAAATATCGAGATAACGAACACaaaa > 2:3627076/1‑150 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACg < 2:3235713/150‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTATATTTATAAATAAAAATAAAATAA‑TTTTTTTTTTATATAGAGTTACAGAGAACAAAAAca > 1:4036753/1‑149 (MQ=255) gCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGa < 2:2101935/150‑1 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGGTTTAAAAAAATAAATAAAATTT‑TTTTTTTTTAATATATAGATAAAGATaaaaaaaaacaccaa > 1:3320505/1‑143 (MQ=255) ccGAATAACCGCCGGGGTGTGGGTTTTTCAGAATGTGTTTTTTCTATACAACTTAATTTTTCTTATCGTGTGGT‑TTTTTTTCTTTTTAAAAATATATTTAATTTTT‑TTTTTTTTAAATTTGGATATAACTATCACAAAAACGACAATATg < 2:4103777/150‑1 (MQ=255) gCATAACCGCGGCGCTGTGCTTTGTTCAGCTTCTGGTTTGTCTATACCACTTACTTTTTCATATCCTGTCGT‑TTTTTTTCGTTTTCAAAATATATTGAAATTAT‑TTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGaa < 2:3872800/150‑1 (MQ=255) cATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTAAAAAAAAAAAGAAATTAT‑TTTTTTTTTTATATAGAGATTAAGCTCACAAAAAAGACAaaatttaa > 2:2225282/1‑146 (MQ=255) tacccgccgCGGTGTGCGTTGTTCAGAATGTGCTTTGTCTATACCACGAAATTTTTCATATCCTGTGTT‑TTTTTTTCTATTTAAAAATATTATTAATTTAT‑TTTTTTTTAAATATCTAGATACCTATCAAAAAAACGACAATATGAAAat < 2:2182354/147‑1 (MQ=255) tacccgccgCGCTGTGGGTTTTTCAGCATCTGCTTTGTCGATACCCCGTACATTTTCATATCCTGTCTT‑TTTTTTTCTATTTCAAAATATAATGAATTTAT‑TTTTTTTTAAATATCGATATAACGATCACAAACACGACAATATGAAAat < 2:2181725/147‑1 (MQ=255) tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTAAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCAAAAAAACGACAATATGAAAat < 2:1422499/150‑1 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTGGATTTGAAAAAAAAATTAAAATAT‑TTTTTTTTTAAAATAGAGATAAACAACACAAAAAAAACaaaattaaaatt > 1:2365189/1‑150 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGGTTTAAAAAAAAAATTTAATTAT‑TTTTTTTTAAATATAGAGGTTACGAACACAAAAAAGACAAAATGagaaat > 1:3572728/1‑148 (MQ=255) aaCCGCCGCGCTGTGCGTTGTCCAGCATCTGCTTTGTCTATACCACGTACTTTTAAATATCCTTTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAatt < 2:4335389/150‑1 (MQ=255) gcTGGGCGTGGTACAGCATCTGCTTTTTCGATACCACTTACTTTTTCATATCCTGTCTT‑TTTTTTTCTATTTAAAAATATAATCAATTTAT‑TTGTTTTTAAATATCGATATAACGACCACAAAAACGACAATATGAAAATTATTCgagga < 2:20638/150‑1 (MQ=255) tgtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATTAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGt < 2:649562/150‑1 (MQ=255) gtgCGTTGTTCAGCATCTGCTTGGTCGATACCACGTACATTTTCATATCCGGTCGT‑TTGTTTTCGATTTCAAAATATAATTAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTg < 2:1351616/150‑1 (MQ=255) tgCGTTGTTCAGCATCTGCTTGGTCGATACCACGTACATTTTCATATCCTGGCGT‑TTTTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGa < 2:1010578/150‑1 (MQ=255) gttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTTTTTTAGATTTAAAAAAAAAAATAAAATAT‑TTTTTTTTAAATATCGAGATAACGATAACAAAAAAGAAAAAAAGAAAAATATTAGAGGAGTTGAAGGCa > 2:1692722/1‑150 (MQ=255) ttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGATTTAAAAAAAAAATTAAAAAAA‑TTTTTTTTTAATATAGAGAAAAACAAAACAAAAAAAACAAAAAGAAAATTAATAGAGGACTGTAAGGCaa > 1:1366525/1‑150 (MQ=255) tCAGAATCTGATTTGTCGATACCACGTAATTTTTCATATCCTGTCGT‑TTTTTTTCGTTTACAAAATATAATGAATTTAT‑TTTTTTTTAAATATCGATATAACTATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaa < 1:2799130/150‑1 (MQ=255) tgttttGTCGATCCCCCGTAAATTTTCATATCCTGTGTT‑TTTTTTTCTTTTAAAAAATATAATTAATTTTT‑TTTTTTTTAAATATCGATATAACGAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGc < 1:3890938/147‑1 (MQ=255) tttGTCTATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTCGATTTCAAAATATAATTAAATTAT‑TTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTc < 2:355657/150‑1 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTAAAAATATAATTAAATTAT‑TTTTTTTTTAATATCGAGATAAAGATAACAAAAAAGACAATATTAAAATTATTGGAGGAGTGTAAGGGAAAAAAAAGGCCTCCCGaa > 2:3568260/1‑149 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGATTTCAAAATATAATGAAAATAT‑TTTTTTTTAAATATCGAGTTAACGATCACAAAAACGACACTATGAAAATTATTAGAGGGGTGAAAGGCCAAAAAACCGCCACCCGag > 2:1933523/1‑149 (MQ=255) tACCACTTAAATTTTCATATCGTGTCTT‑TTTTTTTCTATTAAAAAATATAATAAAATTAT‑TTTTTTTTAATTATCTATATAACTATCAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAgg < 1:3477800/150‑1 (MQ=255) aCCACGTACATTTTCATATCCTGTCGT‑TTTTTTTGGGTTTAAAAATATAATGAAATTAT‑TTTTTTTTTAATATAGAGATAAAATTAAAAAAAACGAAAATATTAAAATTATTAGTGGGGTGGATTGTCAAAAAAAGGCCGGCCGAGAggg > 2:3989717/1‑150 (MQ=255) aCCACGTACATTTTCATATCCTGTCGT‑GTGTTTTTGATTTGAAAATATAATTAAAATAT‑TTTTTTTTTAATTTAGAGTTTACGATAACCAAAACGACAATATTAAAATTTTTAGGGGGGGGTAATGGAAAAAAAAGGCCTGCCGCTTggg > 2:4163751/1‑150 (MQ=255) aCCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGTTTTGAAAAAATAATTTAAATAT‑TTTTTTTTTAATATGGAGATTAACATGACAAAAAAGACCAAATTAAAATTATTTGGGGGGGGTAATGCCAAAAAAAGGCCGCCCGGTTggg > 2:571123/1‑150 (MQ=255) aCCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCGATTTAAAAATATAATGAAATTAT‑TTTTTTTTATATATCGAGGTAAAGATCCCAAAAACGACAATATGTAAATTATTGGAGGAGTGGAAGGCAAAAAAAAAGCCACCCGCGAggg > 2:2739579/1‑150 (MQ=255) cACTTACTTTTTCTTATCTTGTCTT‑TTTTTTTCTTTTTAAAAATATAATTAATTTTT‑TTTTTTTTAAATATCTTGATACCGAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 1:1015078/150‑1 (MQ=255) cACGTAAATTTTCATATCCTGTCTT‑TTTTTTTATATTTAAAAATATAATTAAATTAT‑TTTTTTTTAAATATCTATATAACTAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 1:320681/150‑1 (MQ=255) cGTACATTTTCATATCCTGTCGTGTTGTTTT‑GATTTAAAAATAAAATGAAAATAT‑TTTTTTTTTAAAATAGAGATAACGATAAAAAAAAACACCAAAATAAAATTATTAGGGGTGTGGAAGGCAAAAAAAACGCCACCCCAGAGGGGAGc > 2:780183/1‑150 (MQ=255) gTAAATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGcc < 2:258000/150‑1 (MQ=255) cATTTTCATATCCTGTCGT‑GTGTTTTGGTTTTAAAAATATAATGAAAATAT‑TTTTTTTTTAATATAGAGTTAACGATCACAAAAAAGACAAAATGAAAATTTTTAGAGGGGTGTGAGGGAAAAAAAAAGCCTCCCGAGAGGGACGCCGTa > 2:1188035/1‑150 (MQ=255) aatatCCTGTCTT‑TTTTTTTCTATTTAAAAATATAATTAATTTAT‑TTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAg < 1:258054/149‑1 (MQ=255) tatCCTGTGGT‑TTTTTTTCTTTTAAAAAATATATTTAATTTTT‑TTTTTTTAAAATATCGTTATACCCAAAACAACAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 1:1209436/150‑1 (MQ=255) gTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGAAAATATGAAAATTATTCGAGTTGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg > 2:3891515/1‑150 (MQ=255) ctt‑ttgtttTCTATTAAAAAATATAATTAATTTAT‑TTTTTTTTAAATATCGAGATAACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt < 2:4041017/148‑1 (MQ=255) cGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:2076831/1‑150 (MQ=255) gt‑ttgtttTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 1:4212708/1‑150 (MQ=255) t‑ttgtttTCGATATCAAAAAATAATGAAAATAT‑TTGTTTTTAAATAACGAGATAACGATCACAAAAACGACAATATGAAAATAATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCCATATGGAAGCCGTAGCAAAGAGCGAGTGttat > 1:3239958/1‑148 (MQ=255) ttttCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 1:1871674/1‑150 (MQ=255) ttCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAGATTATTGGTGGAGTGTAAGGCAATAAAACGGCGTCGGGATGGGGTAGCCGTAGCTAGGTGCGGGGGtttgtttggg > 1:2194285/1‑143 (MQ=255) gATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa < 2:895190/150‑1 (MQ=255) tCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCg > 2:1532058/1‑150 (MQ=255) cAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 2:3778258/1‑150 (MQ=255) cAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 2:1197641/1‑150 (MQ=255) cAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 1:3516482/1‑150 (MQ=255) aaaaaTATAATTAATTTAT‑TTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg < 1:2099474/149‑1 (MQ=255) aaaaTATAAGGAAATTAT‑TTGTTTTTAAATATCGAGATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgt < 2:2167928/150‑1 (MQ=255) atatAATGAAATTAT‑TTGTTTTTAAATATCGAGATACCTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa < 2:1599636/150‑1 (MQ=255) atatAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAGGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 1:4254181/1‑150 (MQ=255) atatAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa < 2:3786297/150‑1 (MQ=255) atatAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 2:2611032/1‑150 (MQ=255) tataATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa > 1:377334/1‑150 (MQ=255) taATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAAc > 1:1565843/1‑150 (MQ=255) taATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAAc > 2:2681361/1‑150 (MQ=255) | TTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTAT‑TTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAC > CP009273/2170575‑2170873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |