Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,463,910 G→T 16.5% R434I (AGA→ATA)  gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,463,9100GT16.5% 271.5 / 2.9 125R434I (AGA→ATA) gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base G (31/67);  new base T (8/11);  total (47/78)
Fisher's exact test for biased strand distribution p-value = 4.29e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 126 total aligned reads displayed.

CTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCT  >  CP009273/2463768‑2464057
                                                                                                                                              |                                                                                                                                                    
   tttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                                                                                                            <  2:4253089/150‑1 (MQ=255)
    ttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACa                                                                                                                                           <  1:561427/150‑1 (MQ=255)
     tGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATTAAAAAATTAAAAGAAATAAAGaaaa                                                                                                                                          >  1:140890/1‑150 (MQ=255)
      ggAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAAt                                                                                                                                         <  2:3632165/150‑1 (MQ=255)
                 aTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTAAAATAAATAAAAAAAAAATCGATTTaaa                                                                                                                             >  1:1373745/1‑150 (MQ=255)
                 aTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAATTAAAAAAAAAAAAAAAAAAAAAGATGTaaa                                                                                                                             >  1:2090012/1‑150 (MQ=255)
                    ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCa                                                                                                                          <  2:3693429/150‑1 (MQ=255)
                    ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTAATTTATAAAATAATTAAAATAAATAAAAACAAAATCGATGTAAATCa                                                                                                                          >  2:1057150/1‑150 (MQ=255)
                        gtgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTaa                                                                                                                      <  1:1558029/150‑1 (MQ=255)
                        gtgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTAATTTATAAAATAATAAAAAGAAAACAAAAAAAAAACGATGTAAAGAACaaa                                                                                                                      >  2:2315783/1‑150 (MQ=255)
                           tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGtt                                                                                                                   <  2:826789/150‑1 (MQ=255)
                             aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATTAAATAATTAAAAGAAATAAAGACAATATAGATGTAAAGAACAAATTTTa                                                                                                                 >  2:2307041/1‑150 (MQ=255)
                             aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAAAAAAAAAAAAAAAATCGATTTAAATAACAAAATTTa                                                                                                                 >  2:2305542/1‑150 (MQ=255)
                                tttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                                                                                                              <  1:2140724/150‑1 (MQ=255)
                                   cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgc                                                                                                           <  1:3687493/150‑1 (MQ=255)
                                       gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTTTAAAATAAATAAAAAAAAAAAATACAAAAGCGATTTAAATAACAAATTTTAAATTtagcgc                                                                                                       >  2:2019363/1‑150 (MQ=255)
                                              ataGAGATTTAAGCAAGCATTTATTTGGAATGTCTTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTGAAAAAAAACAATTAAAAAACGGTGTGAAGCACGAAGTTTAAATTTGGGGCCAATCaa                                                                                                >  2:2728402/1‑149 (MQ=255)
                                              ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAATTAAAAGAAATAAAAACAAAATCGATTTAGATCACAAATTGTAAATTTGGCGCCAAACaa                                                                                                >  2:556500/1‑149 (MQ=255)
                                               taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTAAAATAAAAAAAGAAAAAAGAGATTTTAATCACAAATTTTAAATTTCGCGCCAAACaat                                                                                               >  2:2317762/1‑148 (MQ=255)
                                                agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTTTTAAATAATTAAAAGAAAAAAACACAAAATAGATGTAAATGAAAAATTTTTAATTTGGGGCCAATCAttg                                                                                              >  2:447684/1‑148 (MQ=255)
                                                agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTATTTTATAAAATAAATCAAAGAAATAAAGACAAAAGCGATGTAAAGCACTAAGTTTAAATTTAGCGCCaataattg                                                                                              >  2:3184996/1‑148 (MQ=255)
                                                 gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc                                                                                             <  1:1077333/150‑1 (MQ=255)
                                                       tAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTAATTTTATAATAATTAAAAAAAAAAAAAACAAAATCGAAGTCAATCACAAAATTTAAATATAGAGCCAAACATTgcgcgccc                                                                                       >  2:2185963/1‑148 (MQ=255)
                                                       tAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGATAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcac                                                                                       <  1:2071023/150‑1 (MQ=255)
                                                       tAAGAATGCATTTATTTGGAATGTATTTTTAGTTCGACCTTTGCTTATACATAACATTCGTTTTTTTAATTTATAAAATAATTAAAAGAAATCAAGATAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATAATGGCGCGcac                                                                                       <  1:2072675/150‑1 (MQ=255)
                                                        aagcaagcATTTATTTGTAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcaca                                                                                      <  2:1571084/150‑1 (MQ=255)
                                                        aagcaagcATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTAAAAAATAATTAAAATAAAAAAAGAAAAAAGAGATGTAAAGCACAAAATTTAAATTTAGCGCCACTCAAGGCGCGcaca                                                                                      >  2:4300406/1‑150 (MQ=255)
                                                           caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAATTAAAAGAAAAAAAGACAAAAGAGCTGTAAAGCACGAAGTTTTAATTTAGCGCCAAGAACTGCGCCCACaaac                                                                                   >  2:2339434/1‑148 (MQ=255)
                                                           caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGc                                                                                   <  1:4341469/150‑1 (MQ=255)
                                                               caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATAAAAGAAAACAAAAAAAAATCGAAGTAAAACACAAATTTTAAATTTCGCGCCCAAAAAGGCGCGCACCATCtata                                                                               >  2:3179887/1‑150 (MQ=255)
                                                                         ttttttATTTTTGGTTCGACCTTTGCTTATAAATAACTTTGTTTTTTTTAATTTTTAAAATAATTCAAATAAATCAAGACAATCGCTTTTTAAAGCACTATTTTTAATGGGCGCGCAAATCTTGGCGCGCACAAGCTATAATACCAACCt                                                                     <  1:1157100/145‑1 (MQ=255)
                                                                          aaTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTa                                                                    <  2:1043979/150‑1 (MQ=255)
                                                                          aaTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGAGGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTa                                                                    <  2:2007194/150‑1 (MQ=255)
                                                                          aaTGTATTTTTCGTTCGACCTTTGATTATACATAACAGTCGTTTTTTTAATTAATAAAATAATTCAATGAAATCAAGACAATAGCGATGTAAAGCACTAATTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTa                                                                    <  1:66299/150‑1 (MQ=255)
                                                                               aTTTTTCGTTCGACATTTGATTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTATGTTTAAATTGCGCGCCAATCTTGGCGCGCACAAGCTATAATACCAACCTAATTtc                                                               <  1:523539/150‑1 (MQ=255)
                                                                                tttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtct                                                              <  2:2753126/150‑1 (MQ=255)
                                                                                tttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtct                                                              <  2:2753361/150‑1 (MQ=255)
                                                                                  tttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATAAAAGAAATAAACACAAAATCGATGTAAATCACAAAGTTTAAATTTCGCGCCAAAAATGGCGCGCCCAAGCTATAATAACAACCAAAattatac                                                            >  2:4301077/1‑146 (MQ=255)
                                                                                  tttCGTTCGACATTTGATTATACATAACATTCTTTTTTTTAATTTATAAAATAATTAAAATAAATCAAGACAATAGCTTTTTAAAGCACTAAGTTTAAATTGCGCGCCAATCTTGGCGCGCACAAGCTATAATACCAACCTAATTTctcc                                                            <  2:2192921/150‑1 (MQ=255)
                                                                                    tcgttctACCTTTGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctc                                                          <  1:2757257/150‑1 (MQ=255)
                                                                                      gttcgACCTTTGATTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTATTTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcct                                                        <  1:1305956/150‑1 (MQ=255)
                                                                                        tctacttttGATTATACTTAACTTTATTTTTTTTAATTTAAAAAATAATTAAAATAAATAAATAAAATAGCTTTGTAAAGCAATATTTTTAAATTGCGCGCAAATAATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCctct                                                      <  1:4079970/144‑1 (MQ=255)
                                                                                         cgACCTTTGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCtt                                                     <  2:459225/150‑1 (MQ=255)
                                                                                         cgACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCtt                                                     <  2:457650/150‑1 (MQ=255)
                                                                                          gACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTTTAAAATAAATAAAAGAAATAAAGAAAATAGCGATGTAAAACACAAAGTTTAAATTTCGCGCCCATAATGGCGCGCACAAACTATAAAACCAACCAAAATTATCCTACTCTTa                                                    >  2:714585/1‑150 (MQ=255)
                                                                                             cTTTGCTTATACATAAAAGTCGTTTTTTTAATATATAAAATAATTAAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                 <  2:3639196/150‑1 (MQ=255)
                                                                                             cTTTGCTTATAAATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                 <  2:3639152/150‑1 (MQ=255)
                                                                                             attttattATAAATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAATAAGTTTAAATTGCGCGCCAATCTTGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                 <  1:556500/144‑1 (MQ=255)
                                                                                              tttGTTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAAAATAGCGATGTAAAGCAATAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGt                                                <  1:2301976/150‑1 (MQ=255)
                                                                                                tGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGa                                              <  2:2496351/150‑1 (MQ=255)
                                                                                                 gattATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGAc                                             <  2:794815/148‑1 (MQ=255)
                                                                                                 gCTTATACATAACTGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAATTGGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGAc                                             <  1:2017641/150‑1 (MQ=255)
                                                                                                 gCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATTTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGAc                                             <  1:2017625/150‑1 (MQ=255)
                                                                                                       aCATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtc                                       <  1:3600976/150‑1 (MQ=255)
                                                                                                       aCATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtc                                       <  1:2805138/150‑1 (MQ=255)
                                                                                                        cATAACTGTCGTTTTTTTAATTTATAAAATAATAAAAATAAATCAAGACAATCGCTATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtct                                      <  1:2254433/150‑1 (MQ=255)
                                                                                                        cATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATCGCGTTGTAAAGCACTATTTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtct                                      <  1:81887/150‑1 (MQ=255)
                                                                                                         aTAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtctc                                     <  2:2306131/150‑1 (MQ=255)
                                                                                                           aaCAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCt                                   <  1:4288372/150‑1 (MQ=255)
                                                                                                               gTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATa                               <  1:1057150/150‑1 (MQ=255)
                                                                                                                 cttttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                             <  2:2257776/148‑1 (MQ=255)
                                                                                                                 cGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                             <  1:2742384/150‑1 (MQ=255)
                                                                                                                 cGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGACAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                             >  1:3679477/1‑150 (MQ=255)
                                                                                                                 cGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATGGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                             <  1:571496/150‑1 (MQ=255)
                                                                                                                    ttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAAtt                          <  2:4023004/150‑1 (MQ=255)
                                                                                                                    ttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAAtt                          <  1:334047/150‑1 (MQ=255)
                                                                                                                       tttAATTTATAAAATAATTCAAATAAATCAAGACAATCGCGATGTAAAGCACTATTTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                       <  2:772063/150‑1 (MQ=255)
                                                                                                                       tttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                       <  2:3103808/150‑1 (MQ=255)
                                                                                                                       taaaaTTTATAAAATAATTCAAAGAAAACAAGACAATAGCGATTTAAACCACTATTTTTAAATTGCGCGCCAATCAGGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                       <  1:769800/147‑1 (MQ=255)
                                                                                                                        ttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCgg                      <  2:2314745/150‑1 (MQ=255)
                                                                                                                        ttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTCCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCgg                      >  1:1922916/1‑150 (MQ=255)
                                                                                                                         tAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATAATGGCGCGCACAAGCTATAATACCAACCTAATTTATCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGt                     >  1:2392046/1‑150 (MQ=255)
                                                                                                                          aaTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTa                    <  2:4154861/150‑1 (MQ=255)
                                                                                                                            tttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAtt                  <  2:2774961/150‑1 (MQ=255)
                                                                                                                            tttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAtt                  <  2:2774945/150‑1 (MQ=255)
                                                                                                                               ataAAATAATTCAAATAAATCAAGAAAATCGCGATGAAAAGAACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc               <  2:32219/150‑1 (MQ=255)
                                                                                                                               ataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCGATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc               <  2:1355927/150‑1 (MQ=255)
                                                                                                                                taAAATAATACAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCAGGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACt              <  1:1149629/150‑1 (MQ=255)
                                                                                                                                 aaatTATTTCAATTAAATCAAGACAATTTCGATGTAACGCACTAAGTTTAAATTGCGCGCGAATCATGGCGCGCACTAGCTATAATACCAACCTAATGTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa             <  2:1937230/150‑1 (MQ=255)
                                                                                                                                 aaaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa             <  2:62374/150‑1 (MQ=255)
                                                                                                                                  taataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTAt            >  2:3860447/2‑150 (MQ=255)
                                                                                                                                  aaaTAATTCAAAGAAATCAAGACAATAGCGAATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa             <  2:1937266/150‑1 (MQ=255)
                                                                                                                                  aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTAt            >  1:4303197/1‑150 (MQ=255)
                                                                                                                                  aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTAt            >  1:4303207/1‑150 (MQ=255)
                                                                                                                                   aataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc           >  2:1896991/1‑150 (MQ=255)
                                                                                                                                   aataatTAAAAGAAATCAAGACAATAGCGATGTAAAGCAATAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc           <  1:2317762/150‑1 (MQ=255)
                                                                                                                                    ataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCa          >  2:2739565/1‑150 (MQ=255)
                                                                                                                                        ttCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATg      <  2:1283032/150‑1 (MQ=255)
                                                                                                                                        ataaaaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTCGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATg      <  2:2886342/147‑1 (MQ=255)
                                                                                                                                         tCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc     >  2:1021107/1‑150 (MQ=255)
                                                                                                                                         tCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc     >  1:1751498/1‑150 (MQ=255)
                                                                                                                                         tCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc     >  2:91755/1‑150 (MQ=255)
                                                                                                                                          cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc    >  2:1903277/1‑150 (MQ=255)
                                                                                                                                          cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc    >  2:3426996/1‑150 (MQ=255)
                                                                                                                                           aaaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc   >  2:889602/1‑150 (MQ=255)
                                                                                                                                            aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt  >  2:509960/1‑150 (MQ=255)
                                                                                                                                            aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt  >  1:2798503/1‑150 (MQ=255)
                                                                                                                                            aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt  <  2:2016048/150‑1 (MQ=255)
                                                                                                                                            aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt  >  1:2798465/1‑150 (MQ=255)
                                                                                                                                            aaGAAATCAAGACAATAGCGATGTAAAGCAATAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt  <  1:2779733/150‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                    
CTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCT  >  CP009273/2463768‑2464057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: