| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,655,934 | A→C | 5.3% | intergenic (‑444/+8) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,655,934 | 0 | A | C | 5.3% | 604.8 / 5.1 | 224 | intergenic (‑444/+8) | iscR/trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (131/75); new base C (4/14); total (135/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.24e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 229 total aligned reads displayed.
CGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTCACGG > CP009273/2655785‑2656083 | ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACg > 1:1214487/1‑150 (MQ=35) ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACg > 2:2408743/1‑150 (MQ=35) ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACg > 2:4313415/1‑150 (MQ=35) cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTg > 1:483002/1‑150 (MQ=32) cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTg > 1:4360116/1‑150 (MQ=32) cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCGACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTg > 1:483060/1‑150 (MQ=17) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTa > 2:1515477/1‑150 (MQ=33) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTAt > 1:2427035/1‑150 (MQ=34) tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCC‑ACGGCGGTTATTc > 2:3075856/1‑150 (MQ=25) tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTc > 2:730975/1‑150 (MQ=35) tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTc > 1:1442958/1‑150 (MQ=35) gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCg > 2:1420427/1‑150 (MQ=37) ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCgg > 1:4262962/1‑150 (MQ=37) aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCt > 2:1330879/1‑150 (MQ=38) aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTa > 1:2967620/1‑150 (MQ=255) aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTa > 1:3622927/1‑150 (MQ=255) cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCtt > 2:263702/1‑150 (MQ=255) tGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCttt > 2:3511928/1‑150 (MQ=255) tGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCttt > 2:1888184/1‑150 (MQ=255) aTAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTAt > 1:1033055/1‑150 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTct > 1:388085/1‑150 (MQ=255) gCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCTCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTctgctg > 1:2393436/1‑150 (MQ=255) gCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTctgctg > 1:4063948/1‑150 (MQ=255) cATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCtgctgc > 1:792181/1‑150 (MQ=255) tttccgcgGCGCATCTGGCACCGGCTGTCGGTTGCGGCGTGAACGCCTTATCCGACCTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct < 2:1059046/146‑1 (MQ=17) aTTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct > 2:4252632/1‑150 (MQ=255) aTTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct > 1:3072879/1‑150 (MQ=255) ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc > 1:578904/1‑150 (MQ=255) cgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTCCCTGTATTCTGCTGCTCACTAg > 2:4279451/1‑150 (MQ=255) cgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCGTATCCGACCGACGGTTCTGTTCACTGTAGGCCTGATCAGACGCCTTACGCGTCGCATCTGGCA‑CCGGCTGTTATTCGGCCTTGTGTCCTGTATTCTGCTGCTccctag > 2:4278115/1‑145 (MQ=17) gcctCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc > 2:757070/4‑150 (MQ=255) gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCACTAGAAGc > 2:2952109/1‑150 (MQ=255) cATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGcc > 2:3251540/1‑150 (MQ=255) aGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa > 2:4004340/1‑150 (MQ=255) aGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa > 1:1827348/1‑150 (MQ=255) aaggggtgtgGGTTGGGGGGTGACCGCATTAACCGACCTCCGGTTCTGTTCACTGTCGGCCTTATACGACGCTTTCCGGGGCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc < 1:1641937/144‑1 (MQ=255) gTCGGAGGCGGCGTGACCGCCTTACCCGACCTCGGTTTATGTACACTGTCGGCCTTATAAGACGCATTACGCGTCGCATCAGCCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg < 2:797012/150‑1 (MQ=25) ggATGCGGGTTGACCGCCTTATCCGCCCTAGGTTTCTGTAAACTGTAGGCCTGAAAAGACGCATTCCGCGTCGAATCAGGAA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGata < 2:543081/150‑1 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGACCTAGGGTTCTGTTCACTGTCGGCCTGAAAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGata < 2:2319593/150‑1 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGata > 2:1356125/1‑150 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGata > 1:1052164/1‑150 (MQ=255) tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTc > 2:4289644/1‑150 (MQ=255) gggcgTGACCGCATAATCCGACCTACGTTTCTGTACACTGTAGGCCTGATAAGCCGAATTCCGCGTCGCATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCaa < 1:2108604/149‑1 (MQ=37) ggcgTGAACGCCTAATCCGACCTCGGGTTCTGTTCACTGTCGGCGTGATAAGACGCATTACGCGTCGAATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 2:3410103/150‑1 (MQ=25) gcgTGACCGCCTTAGCCGACCTTGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCCGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt < 2:3752093/150‑1 (MQ=25) cttGAACGCCTAACCCGACCTCCTTTTCTTTTCTCTTTAGCCCTTAAACCACCCATTCGGCGACGCATCAGCCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTc < 1:3413211/148‑1 (MQ=255) cgTTAACCCATTATCCGACCTCGGTTTCTGTTCAGTGTTGGCCTGAAACGACGATTTACGCGTCGCACCAGCCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTc < 2:1171009/150‑1 (MQ=255) tGACCGCCTTATCCGACCTCCGGTTCTGTTCACTGTAGGCCTTATAAGACGCATTCCGCGTCGCATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCt < 2:1909976/150‑1 (MQ=37) taaCGCCTTACCCGACCTCGGGTTCTGTTCAGTGTAGGCCTTATAAGCCGCATCCGGCGTCGAATCCGGCC‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg < 1:3727187/149‑1 (MQ=255) gaccGCATTAGCCGACCTTGGGTTCTTTTCTCTGTAGGCCTGATATGCCGCTTTCCGCGTCGCTTCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg < 2:1250630/147‑1 (MQ=255) ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCttt > 1:2467001/1‑150 (MQ=255) tATCCGACATAGGGTTCGGTTCACTGTAGGCCTTATAAGACGCATTACGCGTCGCATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCg < 2:2461976/150‑1 (MQ=37) caTCCGACATAGGGTTCTTTTCACTGTTGGCCTGAAAAGACGAATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCg < 2:287889/149‑1 (MQ=37) tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCggg > 2:881176/1‑150 (MQ=255) ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgc > 2:3953076/1‑150 (MQ=255) gACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgc > 1:1105924/1‑150 (MQ=255) ccctcgggTTCTTTACCCTGTCGGCCTGATAACCCGCATAACGCGCCGCAT‑ACGCACACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgcg < 1:1060923/144‑1 (MQ=255) ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgcgc > 1:2544129/1‑150 (MQ=255) tccgtttCTGTTCACTGTAGGCCTTAAAAGCCGCATTCCGCGTCGCATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCAc < 2:1610802/145‑1 (MQ=255) aggtttCTTTTCAGTGTCGGCCTTATACGACGCATTCCGCGTCGCAACAGCCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACg < 1:631920/146‑1 (MQ=255) ttttttCAGTGTTGGCCTTATATCCCGCTTTACGCGTCCAATCAGGCC‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTaa < 1:2665420/146‑1 (MQ=255) gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACa > 2:500922/1‑150 (MQ=255) ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAg > 1:2754886/1‑150 (MQ=255) cagtGTCGGCCTTATATGCCGCATTACGGGTCGAATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGAc < 1:2787587/147‑1 (MQ=255) tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgc > 1:172158/1‑150 (MQ=255) gcccgCCTCAAAAGCCCCATCACGCGCCCCAACAGCCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCCGCTGCTCAATCGACGCCAGAATCCCGCGCAGGATATACAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgcg < 1:4348180/146‑1 (MQ=255) gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgcg > 1:1526447/1‑150 (MQ=255) tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgcgc > 2:3508693/1‑150 (MQ=255) tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgcgc > 2:3550789/1‑150 (MQ=255) tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgcgc > 2:2983776/1‑150 (MQ=255) ggCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCaa > 1:2213988/1‑150 (MQ=255) gCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAt > 1:880597/1‑150 (MQ=255) cttaTAAGACGAATTCCGCGTCGCATCTGGCC‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAttt < 1:3803053/147‑1 (MQ=255) cTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAttt > 2:3595966/1‑150 (MQ=255) ttaTAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTa < 2:2819670/148‑1 (MQ=255) taTAAGACTCATTACGCGTCGAATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTAt < 2:1499042/149‑1 (MQ=255) taTAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTAt < 2:1500210/149‑1 (MQ=255) aTAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTAtt > 1:3821577/1‑150 (MQ=255) aatactcATTACGCGTCGCATCCGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtca < 2:1405059/144‑1 (MQ=255) aaGACGCATTACGCGTCGCATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtca < 2:916384/150‑1 (MQ=255) aaGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtca < 2:4257090/150‑1 (MQ=255) cgccGCAGTCCGCGGCGCATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtcat < 2:2205808/147‑1 (MQ=255) aGACGAATTACGCGTCGAATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtcat < 2:2687306/150‑1 (MQ=255) cATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCt > 2:3161354/1‑150 (MQ=255) ttACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGc > 1:2362801/1‑150 (MQ=255) cgcgTCGCATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGcccc < 2:2074576/150‑1 (MQ=255) cgcgTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGcccc < 2:2151148/150‑1 (MQ=255) gcgTCGCATCTGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCg < 2:3692138/150‑1 (MQ=255) gcgTCGCATCAGGCC‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCg < 2:1981411/150‑1 (MQ=255) cgTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCgg > 1:346534/1‑150 (MQ=255) tCGCATCAGCCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGAt < 1:3030288/150‑1 (MQ=255) cGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATg > 2:270752/1‑150 (MQ=255) tctggCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGttt < 2:4090296/147‑1 (MQ=255) tCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGttt < 2:3709297/150‑1 (MQ=255) tCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGttt > 1:706490/1‑150 (MQ=255) gctggCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGttt < 2:2802798/147‑1 (MQ=255) aGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTc > 1:327057/1‑150 (MQ=255) ggCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTCa > 2:2458687/1‑150 (MQ=255) ggCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTCa > 2:3807384/1‑150 (MQ=255) cA‑ACGGCTGTTATTCGGCCTTGTTACCGTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAGTTATTCATCACCTGCCCCGGATGGTTTTCACg > 2:3416743/1‑150 (MQ=255) | CGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCA‑ACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTCACGG > CP009273/2655785‑2656083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |