| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,487 | A→T | 5.9% | intergenic (‑100/+330) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,487 | 0 | A | T | 5.9% | 594.5 / 3.1 | 237 | intergenic (‑100/+330) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base A (127/78); new base T (4/15); total (131/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.79e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 240 total aligned reads displayed.
TTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACG > CP009273/3385338‑3385636 | ttCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTa > 1:4118268/1‑150 (MQ=255) cAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTGTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAgg < 1:3439605/150‑1 (MQ=255) ggCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGcc > 2:1697604/1‑150 (MQ=255) ggCCGTTCGCCGCTAGCAATTGTTCACTGACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGcc < 1:1606339/150‑1 (MQ=255) gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCt < 2:160303/150‑1 (MQ=255) ccGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTg < 2:1364409/150‑1 (MQ=255) ccGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTg < 2:3556753/150‑1 (MQ=255) ccGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTg > 2:817851/1‑150 (MQ=255) gTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGAt < 1:1830806/150‑1 (MQ=255) gccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGa > 1:3578215/1‑150 (MQ=255) gccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGa > 1:2442094/1‑150 (MQ=255) gcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGc > 1:772937/1‑150 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTTCGGCTGCCGTATGCGGCGTGAACGCACTATCCAGGCTACGGTTATGTTACGG‑TTTGTAGGCGTGATAAGACGcaca < 2:2589489/150‑1 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGcaca > 1:4342595/1‑150 (MQ=255) gCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAg < 1:4048780/150‑1 (MQ=255) cAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGc > 1:2919511/1‑150 (MQ=255) cAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGc > 2:3674022/1‑150 (MQ=255) gtGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTc > 1:1853199/2‑150 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCg < 1:4306301/150‑1 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCg < 1:1644327/150‑1 (MQ=255) ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACTGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCa < 2:1333920/150‑1 (MQ=255) tCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 1:374849/1‑150 (MQ=255) cTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:305663/150‑1 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGTTACGACGCACAGCGTCGCATCAgg > 2:459025/1‑150 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg < 1:3996447/150‑1 (MQ=255) tACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTTGGCCTGATAAGACGCACAGCGTCGCAGCAGGc > 1:2342738/1‑150 (MQ=255) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa > 1:11209/1‑150 (MQ=255) aGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg < 2:1102576/150‑1 (MQ=255) ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgg < 2:407910/150‑1 (MQ=255) ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgg > 2:3248313/1‑150 (MQ=255) ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgg > 2:2071256/1‑150 (MQ=255) tAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGG‑CTCGTTGGCCtttggca > 1:1769594/1‑115 (MQ=17) tAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 2:2981568/1‑150 (MQ=255) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACg > 2:1722983/1‑150 (MQ=255) tCATGGTTTTTGCTACTGGTTTGTTACTGCTGTAGAGGTTTTTTTACGGCTGCCGGATGCGGCGTGACCGCCCTATCCCGCATACGGTTATGTTCCGG‑TTTGTTGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGAt < 2:3838637/150‑1 (MQ=21) tCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAt > 1:1410147/1‑150 (MQ=255) cATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAATACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATg > 1:500053/1‑150 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATgc > 1:3956681/1‑150 (MQ=255) gTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 2:3832372/1‑150 (MQ=255) gTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATgcggc > 1:270919/1‑150 (MQ=255) tttttGCTACTCTTTTGGTACTGCAGGAGTGGATTTTGACCGGCGGCGGGCGGCGGCTTGACCGCCCTACCCAGCATCGGGTTATGTTCGGG‑TTTGTTGGCCTGATAAGCCGCCCCGCGTCGCACCAGGCAACGGCTGTCGGATgcggcg < 2:1450357/150‑1 (MQ=255) ttttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTAGTAGGCCTGATAAGACGCACAGCGTCGCAACAGGCAACGGCTGTCGGATGCGGCGt > 1:2570182/1‑150 (MQ=255) ttGCTACTGGTTTTTTACTGCAGTAGAGTATTTTTTACGGCTGCCGTATGCGGCGTGAACGCCCTATCCAGCCTACGTTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaa < 2:3713226/150‑1 (MQ=21) tGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaaa > 2:3442035/1‑150 (MQ=255) tGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCAACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaaa > 1:1781812/1‑150 (MQ=255) gCTACTGGTTAGTTTCGGCTGTAGAGGATTTTTTCGGGCGGCCGGATGCGGCGTGAACGCCCTCTCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACCCACCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAAc < 2:3861568/150‑1 (MQ=18) cTACTGGTTGGTTACTGCAGTAGTGTTTTTTTTCCGGCGGCCGGATGCGGCGTGAACGCCCTACCCAGCCTACGTTTATGTGCGGG‑TTTGTCGGCCTGATACGACGCACCGCGTCGCATCAGGCCACGGCTGTCGGATGCGGCGTAAACg < 2:3376018/150‑1 (MQ=25) cTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGAGGCGGCGTGAACGCCCTACCCAGCCTACGTTTTTGTTCCGG‑TTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACg < 2:500510/150‑1 (MQ=25) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTAGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGc > 1:4003030/1‑150 (MQ=255) cTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCt > 1:3390044/1‑150 (MQ=255) tCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCtt > 1:3341931/1‑150 (MQ=255) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGG‑ATAGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGAAAACGCCTTAt > 1:974300/1‑150 (MQ=255) agttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCg > 1:1256960/1‑150 (MQ=255) agttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCg > 1:2166175/1‑150 (MQ=255) agttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTAGTAGGCCTGATAAGACGCACATCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTCAACGCCTTATCCg > 2:1101197/1‑150 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGa > 1:2870415/1‑150 (MQ=255) aCTGCAGTAGAGGTTTTTTTACGGCTGCCGGAGGGGGCGTGAACGCCCTATCCAGCCTAGGGTTATGTTCCGT‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:1195811/150‑1 (MQ=18) tGCAGTAGAGGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATACGACGCCCAGCGTCGCACCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 2:2468925/150‑1 (MQ=255) tGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCtcc > 1:2384687/1‑148 (MQ=255) tgTAGAGGATTTTTTACGGCTGCCGGTTGCGGCGTGAACGCCCTATCCAGCCTCCGGTTTTGTTCCGG‑TTTGTTGGCATGATAATACGCCCAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGt < 2:2399680/149‑1 (MQ=18) gTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGtt > 1:1069570/1‑150 (MQ=255) taTTTTTTACGGCTGCCGTATGCGGCTTGAACGCCCTCTCCAGCCTACGGTTATGTTCCGG‑TTGGTTGGCATTATATTACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc < 1:1059282/149‑1 (MQ=17) aTTTTTTCGGGCGGCCGTTTGGGGGTTGAACCCCCTAGCCCGCCTAGGTTTTTGTTCCGT‑TTTGTCGGCCTGATAAGACGCACAGCGTCGCATCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 1:4357233/150‑1 (MQ=14) ttACGGCTGCGGGTGGGGGCGTGAACGCCATAACCAGCCTTCGTTTTTGTTCCGT‑TTTGTTGGCCTTATAAGACCCACAGCGTCGCATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg < 2:1458065/150‑1 (MQ=14) tccGGCTGCCGGAGGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGt < 2:949639/148‑1 (MQ=255) cTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGcc < 2:1299649/150‑1 (MQ=255) cTGCCGGATGCGGCGTGAACGCCCTACCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGcc < 2:1300842/150‑1 (MQ=255) tGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCt > 1:977256/1‑150 (MQ=255) cGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTGGGTTTGTTGGCCTgtt > 1:2512998/1‑148 (MQ=255) cGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTTGGCCTGAt > 1:4277803/1‑150 (MQ=255) cGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAt > 1:3095824/1‑150 (MQ=255) cGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTGATGTTCGGTTTGTAGGCCTGAt > 2:2308957/1‑150 (MQ=255) gtggcggcgTTAACGCCATACCCAGCCT‑CGGTTTTTTTGCGGTTTTGTGGGCTTGAAAAGACGCACAGCGTCCCAACAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:4134606/147‑1 (MQ=14) ttGCGGCGTGAACGCCATATCCAGCCTCGGTTTTTGTTCCGT‑TTTGTAGGCCTGATAAGACGCACCGGGTCGAACCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg < 1:3832372/149‑1 (MQ=14) cggcgTGAACGCCCTAGCCAGCCTCGGGTTATGTTCCGG‑TTTGTAGGCCTGAAAACACGCCCCCCGGCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACg < 2:3347697/150‑1 (MQ=14) tGACCGCCCTACCCAGCCTACGGTTTTGTCCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCACCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAg < 1:3176221/150‑1 (MQ=14) tGAACGCCCTACCCAGCCTAGGGTTTTGTTCCGG‑TTTGTTGGCCTGATAAGACGCCCAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAg < 1:1426446/150‑1 (MQ=14) gCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:461101/1‑150 (MQ=255) cataaccAGCCTTCGTTTTTTTTCGGT‑TTTGTTGGCCTTATAAGACGCACCGCTTCGCACCAGCACACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa < 1:527691/145‑1 (MQ=11) cTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 1:4292154/1‑150 (MQ=255) cTAACCAGCCTAGGGTTATGTTCGGT‑TTTGTCGGCCTTATACGACCCACCGCGGCGCATCCGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt < 1:2071256/150‑1 (MQ=11) gacccAGCCTCGGGTGTTGTTCCGG‑TTGGTCGGCCGGATAAGACGCACCGCGCCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 2:3999264/147‑1 (MQ=11) cccgCCTAGGGTTTTGTTCCGG‑TTTGTCGGCCTGTTCAGACGCACCGGGTGGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg < 1:342041/147‑1 (MQ=11) ccAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAgg > 1:5975/1‑150 (MQ=255) cAGCCTACGTTTTTGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc < 2:4159096/150‑1 (MQ=255) cAGCCTACGTTTATGTACCGG‑TTTTTAGGCCTGATAAGACGCACAGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc < 2:4159916/150‑1 (MQ=255) aGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTGAGTAGGCCTGATAAGACGCACAGCGACGCATCAGGCa > 1:350569/1‑150 (MQ=255) ccTAGGTTTATGTTCCGT‑TTTTTTGGCCTGATATTACGAACAGCTTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc < 1:1754948/150‑1 (MQ=11) ccTAGGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc < 2:2716286/150‑1 (MQ=255) ccTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTCTAGGCCTGATAAGACGCACAGCGACGCATCAGGAAAc > 2:3201790/1‑150 (MQ=255) ccTACGGTTATGTTCCGG‑TGTGGCGCCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAGGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGATTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc < 2:544503/150‑1 (MQ=11) aCGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 1:1415480/1‑150 (MQ=37) ggTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTGTGGAGGCCTGATAAGACCCACAGCGTCGCATCAGGCAACGGCTg > 1:965403/1‑150 (MQ=255) gTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 1:2971473/1‑150 (MQ=37) tttGTTCGGT‑TTTGTGGGCCTTTTAAGACGAACCGGTTCGCATCAGGCAAGGGCTGTGGTAGGCGGCGTAAACGCCTTATCCGACCTAGGGTTTTTTTCCGTTTGTAGGCCTTATATGACGCACAGCTTCGCATCTGGCAACGGCTGCCg < 2:1781105/148‑1 (MQ=2) tCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgc > 1:929926/1‑150 (MQ=35) ccGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcg > 1:3269825/1‑150 (MQ=34) ccGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcg > 1:1072857/1‑150 (MQ=34) g‑TTTGTAGCCCTTATAACACCCCCCGCGCCGCAACTGGCAAGGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGTTTATGTTCCGTTTGTAGGCCTTATAAGACGCACCGCGTCGCATCAGGCAACGGCTGCCGGATgcggcg < 2:1410147/150‑1 (MQ=11) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTa > 1:830345/1‑150 (MQ=32) | TTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACG > CP009273/3385338‑3385636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |