| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,239 | A→C | 6.8% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,239 | 0 | A | C | 6.8% | 422.2 / 7.8 | 163 | intergenic (+97/+55) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base A (37/111); new base C (12/3); total (49/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 167 total aligned reads displayed.
TCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTGTG > CP009273/3498093‑3498388 | ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAgg < 2:1839283/150‑1 (MQ=255) cgcgCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCg < 2:226311/150‑1 (MQ=255) cgcgCCAATCGCATCACCGTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCg < 2:225516/150‑1 (MQ=255) gcgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGa < 1:292657/150‑1 (MQ=255) gcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCGCACCC‑GAACCCACA‑‑C‑CCCCCAGGGGCGCgg > 2:3995342/1‑150 (MQ=38) ccAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAggg < 2:1099227/150‑1 (MQ=255) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGGCCGCGCCC‑CAACACACTGCC‑CCCAAAggggggggg > 1:1226039/1‑145 (MQ=37) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACAACC‑AAACCCGCG‑‑C‑CCCCAAGgggggggggg > 2:3601128/1‑150 (MQ=38) tCGCATCACCTTCACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGAcc < 1:1398258/150‑1 (MQ=255) tCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTTCCCGCACCC‑CCACCCGCA‑‑C‑ACCCAACGGGCggggggggc > 2:2648656/1‑147 (MQ=37) cGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACACCC‑AAAACCACA‑‑A‑CCCCAAAGGGCGAGGGGcccc > 2:3033489/1‑149 (MQ=37) cGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCC‑AAACCCGAA‑‑A‑CCCAAACGGGCGGGGGGGCCg > 2:2109730/1‑150 (MQ=38) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGtt < 2:3169886/150‑1 (MQ=255) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCGCACCC‑CAAACCCCA‑‑A‑CCCCAACGGGCGACGGGccccct > 2:3167746/1‑147 (MQ=37) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑AAAACCACT‑‑C‑CCCAAAGGGGCGAGGGGCCCggta > 2:4188532/1‑147 (MQ=39) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACACCC‑AAAACCACT‑‑A‑CCCAAACCGGCGAGGGGccccgtc > 2:4062374/1‑146 (MQ=37) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCa < 1:3003997/150‑1 (MQ=255) aCCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑GAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGCCCCttaact > 2:3189935/1‑146 (MQ=255) ccTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCCCACCC‑CAAACCCCA‑‑CACCCAACCGGGCGGGGGGCCCGtaagta > 1:1802996/1‑145 (MQ=37) ttAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACg < 1:239219/150‑1 (MQ=255) aCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGaa < 2:3029359/150‑1 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAAtt < 1:1671444/150‑1 (MQ=255) aTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAAttt < 1:2881253/150‑1 (MQ=255) aTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCACCCCCAAAACCCACC‑‑C‑CCCAACGGGG‑GCGGGGACCCGTCCCG‑ACGGAAttt > 2:3109827/1‑150 (MQ=25) tGATAATAACAGACATTACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAg < 1:1108595/150‑1 (MQ=255) tGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAg < 1:2785694/150‑1 (MQ=255) gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGc < 1:2085705/150‑1 (MQ=255) taataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCtt < 1:633254/150‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTg < 1:2155240/150‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGa < 1:1588524/150‑1 (MQ=255) ataaAAGACATAAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGa < 1:1588923/150‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATCAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCC‑GAACCCTCT‑‑C‑CCCCAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATGTAGCGTTACg > 2:2832137/1‑150 (MQ=39) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACg < 1:143038/150‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACg < 2:2892434/150‑1 (MQ=255) aaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTACCCACACCC‑CAACCCCCA‑‑C‑CCCCAAAGGGCGAGGGGGCCCGTCAGA‑AACGCAATTATCTTGACGGt > 2:2531260/1‑150 (MQ=25) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTGCCCACCCCC‑CAAACCCCA‑‑A‑CCCCAACGGGCGGGGGGGCCCGTCAGTAACGCAATTTA‑CGTGACGGTg > 1:687150/1‑150 (MQ=19) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTa < 1:4094311/150‑1 (MQ=255) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCACCC‑AAACCCCCT‑‑C‑CCCAAAGGGGCGAGGGGGCCGTTAAGT‑ACGGAAATTAGCATGACGGTGCTa > 2:3211974/1‑150 (MQ=38) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACAACC‑AAACCCTCT‑‑A‑CCCAAATGGGCGAGGGGTCCGTTAAGT‑ACGGTAATTATATTTTCGGTGCTa > 2:3211907/1‑150 (MQ=25) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATCTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTa < 1:1279847/150‑1 (MQ=255) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTAt < 2:3709965/150‑1 (MQ=255) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCa < 1:304226/150‑1 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAg < 1:3844391/150‑1 (MQ=255) ccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGc < 1:795864/150‑1 (MQ=255) gTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 1:2824327/150‑1 (MQ=255) gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTaaa < 1:3162713/150‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATa < 1:4243862/150‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATa < 1:197748/150‑1 (MQ=255) ggATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACAACC‑TAACCCAAT‑‑A‑CCCCCAGGGGCGAGGGGGCCGTTCCTT‑ACGGAATTTAGCTTGACGGTGCAATCCAGCCTTAAATAc > 2:696696/1‑150 (MQ=255) ggATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATAc < 2:762716/150‑1 (MQ=255) gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACt < 1:4060918/150‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTgg < 2:523009/150‑1 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAAt < 1:2579790/150‑1 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAAt < 2:2183148/150‑1 (MQ=255) cgcCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATAct < 2:3325238/150‑1 (MQ=255) catcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACACAC‑AAACCCACA‑‑C‑CCCAAAAGGGCGGGGGGACCGGGAAGT‑ACGGCATTTATCTTGAACGTGGTATCCAGCAATAAAAAAAGGCAAAAATCTCACCCcaaa > 2:2053692/1‑150 (MQ=255) atcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAAt < 2:2273462/150‑1 (MQ=255) aTCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCCAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 1:2188018/150‑1 (MQ=255) aTCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTTCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 1:3181571/150‑1 (MQ=255) aTCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 1:107379/150‑1 (MQ=255) aTCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 1:107560/150‑1 (MQ=255) aTCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 1:2187909/150‑1 (MQ=255) tCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTc < 1:506627/150‑1 (MQ=255) cccGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCg < 1:2648656/150‑1 (MQ=255) gTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGt < 1:2109730/150‑1 (MQ=255) tACGTTCCCCTCACCC‑TCACCCTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGtt < 2:2624476/150‑1 (MQ=255) aCGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTa < 1:3515562/150‑1 (MQ=255) aCGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTa < 1:3515545/150‑1 (MQ=255) gTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 2:3669591/150‑1 (MQ=255) ttCCCCTCACCC‑TACCCCTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATg < 2:1422877/150‑1 (MQ=255) ttCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGGTAAtt > 2:4337479/1‑149 (MQ=255) tCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAATGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTATTGc > 2:4291683/1‑150 (MQ=255) tCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGc < 2:1036488/150‑1 (MQ=255) ccccTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCg > 1:1608776/1‑150 (MQ=255) cccTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGa > 2:4338353/1‑150 (MQ=255) cTCACCC‑TAACCCTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt < 2:1226039/150‑1 (MQ=255) cTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt < 2:1225363/150‑1 (MQ=255) tCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATc < 1:3312178/150‑1 (MQ=255) tCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATc < 1:3280403/150‑1 (MQ=255) tCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATc < 1:1029464/150‑1 (MQ=255) cACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCg > 2:3518778/1‑150 (MQ=255) cACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAGTCGGGTTAATGCGAATCg > 2:3518655/1‑150 (MQ=255) aCCC‑TAACCCGCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGc < 2:3879763/150‑1 (MQ=255) ccc‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGca < 2:4096585/150‑1 (MQ=255) c‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcaca < 1:953622/150‑1 (MQ=255) c‑TAACCCGCT‑‑C‑CCCACCGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATAGcaca < 2:478453/150‑1 (MQ=255) tAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACaa > 1:4254838/1‑150 (MQ=255) tAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACaa > 1:2065773/1‑150 (MQ=255) tAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACaa < 2:2754657/150‑1 (MQ=255) tAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAGTCGGGTTAATGCGAATCGCACaa > 2:1528149/1‑150 (MQ=255) aaCCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGACTCGCACAAt > 1:2618708/1‑150 (MQ=255) aCCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCAGGTTAATGCGAATCGCACAATg > 1:2659378/1‑150 (MQ=255) ccTCT‑‑C‑CCCACAGGGGCGAGGGGACCGTTCAGT‑ACCGAATTTAGCTTGACGGTGCGATCCAGCATTAAATACTGGCAATACTCTCACGCAACATCCGCAGCACCGTCTCTTCCCCGCTGCGATTCGGGTTAATGCGAATCGCACACTGtt < 2:4210377/150‑1 (MQ=255) ccTCT‑‑C‑CCCAACGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAACTCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt < 2:2022026/150‑1 (MQ=255) ctct‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTc < 1:922633/150‑1 (MQ=255) ct‑‑c‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTg > 1:408341/1‑150 (MQ=255) ccccAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAtt < 2:598506/150‑1 (MQ=255) cccACAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAtt < 1:3072065/150‑1 (MQ=255) aaaGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtgtg > 2:1902177/1‑150 (MQ=255) aaaGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCGTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtgtg < 2:1645517/150‑1 (MQ=255) | TCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCC‑TAACCCTCT‑‑C‑CCCAAAGGGGCGAGGGGACCGTTCAGT‑ACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTGTG > CP009273/3498093‑3498388 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |