Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 3,542,744 | T→A | 11.3% | Q229L (CAG→CTG) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 3,542,744 | 0 | T | A | 11.3% | 1039.6 / 104.0 | 327 | Q229L (CAG→CTG) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
Reads supporting (aligned to +/- strand): ref base T (136/154); new base A (7/30); total (143/184) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.30e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
Only 100 of 329 total aligned reads displayed.
CATCTGCTCATCATCACGTTGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAGGCCAATGAACGAC > CP009273/3542596‑3542893 | cATCTGCTCATCATCACGTTGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTg < 1:2967783/150‑1 (MQ=255) cATCTGCTCATCATCACGTTGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTg < 1:128464/150‑1 (MQ=255) tCTGCTCATCATCACGTTGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAg < 1:2073854/150‑1 (MQ=255) cTCATCATCACGTTGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCctc < 2:3206392/150‑1 (MQ=255) tcatcaCGTTGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCg < 2:1540014/150‑1 (MQ=255) gTTGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGAt < 1:1313572/150‑1 (MQ=255) tGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATgg < 1:185752/150‑1 (MQ=255) gcgAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGaaa < 1:237379/150‑1 (MQ=255) cgAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAAt < 2:4307368/150‑1 (MQ=255) gAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATc > 1:3614459/1‑150 (MQ=255) aaaCCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCt < 2:2802867/150‑1 (MQ=255) aCCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTc < 1:815070/150‑1 (MQ=255) ccTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCa > 2:3959539/1‑150 (MQ=255) tttCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAAc < 1:1009715/150‑1 (MQ=255) tttCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAAc < 1:1111774/150‑1 (MQ=255) tCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACgg > 2:3064465/1‑150 (MQ=255) ccACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGc < 2:464125/150‑1 (MQ=255) aCGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGt < 1:765544/150‑1 (MQ=255) cGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGtt < 2:2296170/150‑1 (MQ=255) cGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGtt > 1:4189172/1‑150 (MQ=255) gCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTa > 2:1886776/1‑150 (MQ=255) gCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTa > 1:2649960/1‑150 (MQ=255) gCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTa < 2:4110908/150‑1 (MQ=255) ccATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTaa > 2:540795/1‑150 (MQ=255) ccATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTaa < 1:3196098/150‑1 (MQ=255) tttCGTAATGCTGTCATTTTTCGGGGGGTAACCGTGGATTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACg < 1:734099/149‑1 (MQ=255) tCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTc < 2:2981247/150‑1 (MQ=255) cGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCg > 2:69088/1‑150 (MQ=255) cGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCg > 2:810589/1‑150 (MQ=255) tAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGat < 1:4107379/150‑1 (MQ=255) tAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGat > 1:83268/1‑150 (MQ=255) tAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGat < 2:4274749/150‑1 (MQ=255) aaTGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGata < 1:3897717/150‑1 (MQ=255) gCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATaa > 1:874540/1‑150 (MQ=255) cTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATaaa > 1:2719294/1‑150 (MQ=255) tGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAAt > 2:1183613/1‑150 (MQ=255) tGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAAt < 1:117427/150‑1 (MQ=255) gTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATc < 1:2200209/150‑1 (MQ=255) tCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATca < 2:1341902/150‑1 (MQ=255) tCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATca > 1:1090897/1‑150 (MQ=255) tCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCAACCAGGCCTGAGCCTCTTCGCTAAGATGTAAATCTTCAACGGCGTTAACGTCGATATAAATca < 1:90955/150‑1 (MQ=255) cATTTAAAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGAGTGGTCGGCAACTGCCACCAGTCCTGAGCCTCTACGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATcac > 1:2267853/1‑150 (MQ=255) aTTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATcaca > 2:869976/1‑150 (MQ=255) ttttAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACAtt < 2:3866042/150‑1 (MQ=255) ttttAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACAtt < 2:1678020/150‑1 (MQ=255) ttAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCa > 1:1762906/1‑150 (MQ=255) tAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAg < 1:491214/150‑1 (MQ=255) tAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAg < 1:3054342/150‑1 (MQ=255) aGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGc > 2:4181949/1‑150 (MQ=255) gggCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGcc < 2:1281436/150‑1 (MQ=255) ggCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCa < 1:1247515/150‑1 (MQ=255) cGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAAc < 1:4341153/150‑1 (MQ=255) cGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAAc > 1:2810496/1‑150 (MQ=255) ggTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACg < 2:2488756/150‑1 (MQ=255) ggTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACg > 2:1439388/1‑150 (MQ=255) aaCCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCg > 2:1346248/1‑150 (MQ=255) aaCCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCg < 2:2563883/150‑1 (MQ=255) cGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCgaga > 2:3887925/1‑150 (MQ=255) gTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGagaa > 1:3709469/1‑150 (MQ=255) tGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAGATCACATTCAGCCAACGGCGagaag < 2:827892/150‑1 (MQ=255) tGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGagaag < 2:3289385/150‑1 (MQ=255) gtgTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCGGTTGCGTGGTCGGCAACTGCCACCTGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGAc < 1:2957603/148‑1 (MQ=255) gAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGAc < 2:833057/150‑1 (MQ=255) aTCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCt > 2:1073209/1‑150 (MQ=255) cGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGt < 1:137291/150‑1 (MQ=255) gACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTa > 2:1086150/1‑150 (MQ=255) ccAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTGAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATgg > 2:1608418/1‑150 (MQ=255) cAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATggg < 2:3527201/150‑1 (MQ=255) aGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGc > 2:4236061/1‑150 (MQ=255) tCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTg < 1:2380445/150‑1 (MQ=255) ggCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGgc > 2:1646016/1‑150 (MQ=255) ggCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGgc > 1:145888/1‑150 (MQ=255) aTCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGct < 2:590185/150‑1 (MQ=255) gcgcgcCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCtctc < 1:628936/150‑1 (MQ=255) cgcCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCgg > 2:3329637/1‑150 (MQ=255) cgcCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCgg > 1:176494/1‑150 (MQ=255) cTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGAtt > 1:2026707/1‑150 (MQ=255) tGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGAttt < 1:3440691/150‑1 (MQ=255) tGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGAttt < 2:1975642/150‑1 (MQ=255) gTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTg > 1:2859091/1‑150 (MQ=255) gTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTg < 2:2058544/150‑1 (MQ=255) gCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGGGCCTCTTCGCTAAGATGGAAATCTTCAACGGAGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCg > 2:337941/1‑150 (MQ=255) aGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGa > 2:4348029/1‑150 (MQ=255) gCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCAt < 1:1099409/150‑1 (MQ=255) cGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATg < 2:2193891/150‑1 (MQ=255) ggTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAAt < 2:287840/150‑1 (MQ=255) cAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGtt < 1:4294593/150‑1 (MQ=255) aaCTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTc < 1:3235725/150‑1 (MQ=255) aCTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCTGGATAGAGCGCATGAATCGGGTTCa < 1:1279398/150‑1 (MQ=255) aCTGCCACCAGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCa < 2:2580347/150‑1 (MQ=255) cTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAg > 2:1860932/1‑150 (MQ=255) cTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAg < 1:1641414/150‑1 (MQ=255) tGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAgg < 1:3398356/150‑1 (MQ=255) tGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAgg < 1:1205356/150‑1 (MQ=255) ccaccaGGCCAGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAGGcc > 1:4013224/1‑150 (MQ=255) aGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAGGCCAATGa > 1:251549/1‑150 (MQ=255) aGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAGGCCAATGa > 1:3549764/1‑150 (MQ=255) cgCCTGAGCCTCTGCGCTAAGATGGAAATCATCTACGGCGTTAACGTCGATATAAATCACATTCAGCCAACTGCGAGAAGACGGGCTGTATTGGCAGGCGCTCTCCGGATTTTCCGGATAGACCGCATGACTCGGGTTGAGCCCAAAGac > 2:2177950/2‑149 (MQ=255) ccTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAGGCCAATGAACg > 2:3806637/1‑150 (MQ=255) tGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAGGCCAATGAACGAc > 1:1538718/1‑150 (MQ=255) | CATCTGCTCATCATCACGTTGCGCGAAACCTTTCCACGCCATTCGTAATGCTGTCATTTTTAGGGCGGTAACCGTGGAGTAATCGACCCAGTCGGCATCGCGCGCCTGTTGCAGCGTCTGTTGCGTGGTCGGCAACTGCCACCAGGCCTGAGCCTCTTCGCTAAGATGGAAATCTTCAACGGCGTTAACGTCGATATAAATCACATTCAGCCAACGGCGAGAAGACGGGCTGTATGGGCTGGCGCTCTCCGGATTTGCCGGATAGAGCGCATGAATCGGGTTCAGGCCAATGAACGAC > CP009273/3542596‑3542893 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |