| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,548,048 | T→A | 7.8% | S535R (AGT→AGA) | malT → | mal regulon transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,548,048 | 0 | T | A | 7.8% | 828.8 / 47.4 | 245 | S535R (AGT→AGA) | malT | mal regulon transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base T (134/92); new base A (9/10); total (143/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.74e-01 | |||||||||||
Only 100 of 252 total aligned reads displayed.
AGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGGCGCG > CP009273/3547899‑3548197 | aGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGt < 1:3532468/150‑1 (MQ=255)aGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGt < 1:3386832/150‑1 (MQ=255)aGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGt < 1:565536/150‑1 (MQ=255) gCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGaaa > 1:763481/1‑150 (MQ=255) gCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGaaa > 2:3716766/1‑150 (MQ=255) ttGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTc < 2:2253824/150‑1 (MQ=255) ttGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTc < 1:519509/150‑1 (MQ=255) tgGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTACTGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGt < 2:376430/150‑1 (MQ=255) ggCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGtt > 2:3453220/1‑150 (MQ=255) gCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGttt < 2:2741105/150‑1 (MQ=255) gCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGttt < 1:2434764/150‑1 (MQ=255) aaCCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGc > 1:1705769/1‑150 (MQ=255) ccTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGccc < 2:3093400/150‑1 (MQ=255) cGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGAGGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAATTGAAATTCTGTTTGCCCAAg < 2:1585883/150‑1 (MQ=255) ggTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAgg > 1:1986899/1‑150 (MQ=255) gTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAggg > 1:1210131/1‑150 (MQ=255) gTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAggg < 1:1893639/150‑1 (MQ=255) tGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGt < 1:318577/150‑1 (MQ=255) tGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGt > 1:2669507/1‑150 (MQ=255) tGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTcc > 1:2056202/1‑150 (MQ=255) tGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTcc > 1:2056353/1‑150 (MQ=255) gggTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCt < 2:2619119/150‑1 (MQ=255) tGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCa > 1:3304723/1‑150 (MQ=255) tGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCa > 1:2823443/1‑150 (MQ=255) gTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTCCGCTTTGTGGAGTTTAATCCAGAAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAAcc > 1:3661302/1‑150 (MQ=255) gctgcACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACcgc > 2:3977046/1‑150 (MQ=255) tgcactgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGt > 1:972135/1‑150 (MQ=255) gcactgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTg < 1:3343473/150‑1 (MQ=255) cactgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTgg > 2:1149105/1‑150 (MQ=255) ctgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGa < 1:1155520/150‑1 (MQ=255) ctgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGa > 1:1426678/1‑150 (MQ=255) caAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAAc < 2:2944395/150‑1 (MQ=255) cGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGa < 1:1530237/150‑1 (MQ=255) cGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGa > 1:1112971/1‑150 (MQ=255) gAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAACCGCAGGaa > 2:2814311/1‑150 (MQ=255) cTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCa > 1:431758/1‑150 (MQ=255) tCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAg < 1:1849484/150‑1 (MQ=255) aCTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCt > 1:1301263/1‑150 (MQ=255) aCTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCt > 1:3739931/1‑150 (MQ=255) ggCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGAt > 2:2434935/1‑150 (MQ=255) tAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACg > 2:2458727/1‑150 (MQ=255) aaTGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGa > 1:1314469/1‑150 (MQ=255) gcagcaAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGagca > 2:4357382/1‑150 (MQ=255) gcagcaAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGagca < 2:568976/150‑1 (MQ=255) agcaAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGagcagc > 2:2344049/1‑150 (MQ=255) agcaAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGagcagc > 2:3383733/1‑150 (MQ=255) caAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGACAAAGCATTCCAGCTGATCAACGAGCAGCAt > 2:2572273/1‑150 (MQ=255) caAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCAt > 2:3125453/1‑150 (MQ=255) caAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCAt > 1:1201885/1‑150 (MQ=255) caAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCAt > 1:2650923/1‑150 (MQ=255) cGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGa > 1:3180474/1‑150 (MQ=255) cGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTAATCAACGAGCAGCATCTGGa > 1:3182455/1‑150 (MQ=255) aaCAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAAc > 1:3250352/1‑150 (MQ=255) cAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAg > 2:2911244/1‑150 (MQ=255) aGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGc > 1:2934406/1‑150 (MQ=255) gATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCAAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACTGCt < 1:2624090/150‑1 (MQ=255) ggCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGcc > 1:1325144/1‑150 (MQ=255) gCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCa < 2:1537304/150‑1 (MQ=255) aCGCCAGCACGATGTCTGGCACTTCGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAAt < 2:1959477/150‑1 (MQ=255) gCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGc > 1:761040/1‑150 (MQ=255) ccAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCa > 1:3973643/1‑150 (MQ=255) aGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATg < 1:1294968/150‑1 (MQ=255) cACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAg < 2:2166663/150‑1 (MQ=255) cACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAg < 2:3055186/150‑1 (MQ=255) ncGATGTCTGGNACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGt > 2:2032669/2‑150 (MQ=255) gATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTACCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGttt < 2:191947/150‑1 (MQ=255) aTGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTc > 1:4336602/1‑150 (MQ=255) tGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCt < 1:3400484/150‑1 (MQ=255) tGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCt < 1:3400639/150‑1 (MQ=255) gTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTg < 2:763077/150‑1 (MQ=255) tGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTg > 1:1054551/1‑150 (MQ=255) ggCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTgc > 2:1314711/1‑150 (MQ=255) gCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTgcg < 1:3825457/150‑1 (MQ=255) cACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTgcgc > 2:2190957/1‑150 (MQ=255) cTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCAt > 1:1458175/1‑150 (MQ=255) cTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCAt > 1:3008321/1‑150 (MQ=255) cTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCAt < 1:3269648/150‑1 (MQ=255) cGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCg > 1:2250242/1‑150 (MQ=255) ttGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTgcg < 1:1051632/150‑1 (MQ=255) gtgGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCa < 2:1239114/150‑1 (MQ=255) gtgGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCa > 2:672469/1‑150 (MQ=255) ggAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGc > 1:693078/1‑150 (MQ=255) gAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCt > 1:4061161/1‑150 (MQ=255) gTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGt > 2:3158588/1‑150 (MQ=255) tttAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGtt < 2:857365/150‑1 (MQ=255) tttAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGtt < 2:1426678/150‑1 (MQ=255) ttAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCAGTCGTGCGCAGCTGTTa > 2:3510955/1‑150 (MQ=255) tAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTAt < 2:3134570/150‑1 (MQ=255) tAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTAt > 1:3698139/1‑150 (MQ=255) tAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTAt > 1:887186/1‑150 (MQ=255) aaTCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATg > 1:3047335/1‑150 (MQ=255) aTCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATgg > 2:3203825/1‑150 (MQ=255) ccAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGc < 1:1841761/150‑1 (MQ=255) ccAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGc > 1:707525/1‑150 (MQ=255) ccAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTGATGGGc > 2:2872549/1‑150 (MQ=255) cAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGcc > 1:278049/1‑150 (MQ=255) cAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGcc < 2:3841680/150‑1 (MQ=255) gCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTg > 2:593116/1‑150 (MQ=255) aGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGgcg < 1:4232182/150‑1 (MQ=255) tGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGGcgcg > 2:2705679/1‑150 (MQ=255) | AGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGGCGCG > CP009273/3547899‑3548197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |