| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,897,991 | C→A | 5.1% | D323Y (GAC→TAC) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,897,991 | 0 | C | A | 5.1% | 1019.8 / 22.2 | 264 | D323Y (GAC→TAC) | bglF | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
| Reads supporting (aligned to +/- strand): ref base C (130/118); new base A (4/10); total (134/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 268 total aligned reads displayed.
TACCGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAGAGATAACCGGCGGCAATCA > CP009273/3897842‑3898140 | taCCGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTc > 2:380321/1‑150 (MQ=255)taCCGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTc > 2:379504/1‑150 (MQ=255) aCCGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCg > 2:676980/1‑150 (MQ=255) ccGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCCTTAACAGCGGGATCATGGTGTCGt > 2:2965463/1‑150 (MQ=255) ccGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGt > 1:281450/1‑150 (MQ=255) cGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTa > 2:3956663/1‑150 (MQ=255) cGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTa > 2:3955425/1‑150 (MQ=255) cGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTa < 1:2261966/150‑1 (MQ=255) cTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGc > 1:2407964/1‑150 (MQ=255) ggTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGccc < 2:3367180/150‑1 (MQ=255) ttCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGTGGGATCATGGTGTCGTAGCCCAg > 2:772122/1‑150 (MQ=255) cGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCa < 2:2456464/150‑1 (MQ=255) cGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCa < 1:902787/150‑1 (MQ=255) ggTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCAc < 1:4324598/150‑1 (MQ=255) ggTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCAGCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCAc > 1:252961/1‑150 (MQ=255) gTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACg > 1:1047462/1‑150 (MQ=255) gTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTAGTAGCCCAGCACg < 1:66920/150‑1 (MQ=255) aTACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTg < 2:1869381/150‑1 (MQ=255) tACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTAGTAGCCCAGCACGGTGa < 1:1318504/150‑1 (MQ=255) aCCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGaa > 2:640633/1‑150 (MQ=255) aaaCAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGtt < 1:1871386/150‑1 (MQ=255) aaaCAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGtt < 2:1143210/150‑1 (MQ=255) aaaCAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGtt < 2:4015310/150‑1 (MQ=255) aaaCAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGtt > 2:2663809/1‑150 (MQ=255) aaCAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTa < 2:747140/150‑1 (MQ=255) aaCAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTa < 2:1333622/150‑1 (MQ=255) aCAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTAGTAGCCCAGCACGGTGAAGTTAt > 2:1533445/1‑150 (MQ=255) cAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTAtt < 2:3427458/150‑1 (MQ=255) aGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTTGTAGCCCAGCACGGTGAAGTTATTg < 2:467700/150‑1 (MQ=255) aGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTg > 1:2956618/1‑150 (MQ=255) aGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTg > 1:2682583/1‑150 (MQ=255) aGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTg > 2:710425/1‑150 (MQ=255) cTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATa < 1:1344889/150‑1 (MQ=255) cAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAg < 2:3488954/150‑1 (MQ=255) cAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAg > 2:1758981/1‑150 (MQ=255) cAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAg < 2:1296259/150‑1 (MQ=255) gccgcTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGc > 1:2735439/1‑150 (MQ=255) gcTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTAGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCAcc < 1:2388596/150‑1 (MQ=255) tGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAg < 2:1789113/150‑1 (MQ=255) tGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAg < 2:3350314/150‑1 (MQ=255) tGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAg > 1:3651997/1‑150 (MQ=255) gATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAgg < 2:2854269/150‑1 (MQ=255) aTCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGc > 1:3216855/1‑150 (MQ=255) cccGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTAGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGccc > 1:2071606/1‑150 (MQ=255) gCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAg < 2:3230431/150‑1 (MQ=255) caccacTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTg < 2:2060693/150‑1 (MQ=255) ccacTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCa > 2:2348011/1‑150 (MQ=255) cacTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAg < 1:1068159/150‑1 (MQ=255) cacTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAg > 1:2294214/1‑150 (MQ=255) cacTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAg < 1:1205008/150‑1 (MQ=255) cTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTc < 1:1010819/150‑1 (MQ=255) ttttttCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTcc < 1:2955649/150‑1 (MQ=255) ttttCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGa < 1:3949420/150‑1 (MQ=255) ttCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAAc < 1:2834500/150‑1 (MQ=255) cgcATCGCGGTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGAc < 2:3647926/150‑1 (MQ=255) gcATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACg < 1:576240/150‑1 (MQ=255) gcATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACg > 1:3422712/1‑150 (MQ=255) cATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGa > 2:1583949/1‑150 (MQ=255) aTCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTAGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGaa < 1:744879/150‑1 (MQ=255) cgcgTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGa > 2:2464313/1‑150 (MQ=255) cgTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGAtt > 1:3840106/1‑150 (MQ=255) cAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAg < 1:2119633/150‑1 (MQ=255) cAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTAGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAg > 2:1892728/1‑150 (MQ=255) agagGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGa > 1:3040233/1‑150 (MQ=255) agagGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGa > 1:1180344/1‑150 (MQ=255) gagGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGaa > 2:3848912/1‑150 (MQ=255) gagGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGaa > 1:792808/1‑150 (MQ=255) agGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAg < 2:3527234/150‑1 (MQ=255) agGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAg < 1:3382072/150‑1 (MQ=255) gACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAgccgcc > 2:490430/1‑150 (MQ=255) cGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCa > 1:992771/1‑150 (MQ=255) gAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTTGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTAc < 1:3935991/150‑1 (MQ=255) gAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTAc > 2:1437367/1‑150 (MQ=255) gAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTAGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTAc < 1:713665/150‑1 (MQ=255) gcgcCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACcg > 2:3165094/1‑150 (MQ=255) cgccCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGcc < 1:1752226/150‑1 (MQ=255) ccTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATg > 2:2549464/1‑150 (MQ=255) ccATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGaa < 2:2294214/150‑1 (MQ=255) aaTGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGc > 2:2778898/1‑150 (MQ=255) tGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCt > 2:414773/1‑150 (MQ=255) gCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGa < 2:3334209/150‑1 (MQ=255) gCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGa < 2:2102868/150‑1 (MQ=255) aTTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGc > 1:3114046/1‑150 (MQ=255) ttAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGcc < 2:1980230/150‑1 (MQ=255) ttAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGcc < 1:2218716/150‑1 (MQ=255) ttAACAGCGGGATCATGGTGTAGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGcc < 2:1718624/150‑1 (MQ=255) tAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCa > 2:4178146/1‑150 (MQ=255) tAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCa < 1:3956663/150‑1 (MQ=255) aaCAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCag > 1:3116031/1‑150 (MQ=255) aaCAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCag > 2:2522135/1‑150 (MQ=255) cAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCagag < 1:1758981/150‑1 (MQ=255) aGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAgaga < 1:3798540/150‑1 (MQ=255) aGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAgaga > 2:2885081/1‑150 (MQ=255) aGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAgaga < 1:4053406/150‑1 (MQ=255) cGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAGAGATa < 1:2626058/150‑1 (MQ=255) cGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAGAGATa < 1:708577/150‑1 (MQ=255) gggATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAGAGATaa > 1:1514773/1‑150 (MQ=255) ggATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAGAGATAAc > 2:4081652/1‑150 (MQ=255) gATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAGAGATAAcc > 1:3890071/1‑150 (MQ=255) cGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAGAGATAACCGGCGGCAATCa > 1:1136683/1‑150 (MQ=255) | TACCGCTGGTTCGGTGATACCAAACAGACTCGTCAACGCCGCTGATCCCGCCACCACTTTTTTCTGCGCATCGCGTTCGCAGAGGAAGACGCCGAGCGCCGCCCCGACCTGCGCCATAATGGCGGGCATTAACAGCGGGATCATGGTGTCGTAGCCCAGCACGGTGAAGTTATTGATACACAGCGGCACCAGGCCCCAGTGCAGTCCGAACATGACGAAGATTTGCCAGAAGCCGCCCATTACCGCGCCCGCAAATGCAGGAACCGCCTGATAAAGCCAGAGATAACCGGCGGCAATCA > CP009273/3897842‑3898140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |