| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,901,867 | T→G | 9.1% | intergenic (‑141/+42) | pstB ← / ← pstA | phosphate transporter subunit/phosphate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,901,867 | 0 | T | G | 9.1% | 570.5 / 14.9 | 258 | intergenic (‑141/+42) | pstB/pstA | phosphate transporter subunit/phosphate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (160/67); new base G (7/24); total (167/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.98e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 263 total aligned reads displayed.
CATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCG > CP009273/3901718‑3902015 | aTACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTg < 2:2383296/150‑1 (MQ=255) aTACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTg < 2:3796673/150‑1 (MQ=255) tACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTgg > 1:1117129/1‑150 (MQ=255) tACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTgg > 1:2304755/1‑150 (MQ=255) aCTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTggg > 2:220523/1‑150 (MQ=255) aCTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTggg > 2:1691989/1‑150 (MQ=255) tCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGga > 1:3417235/1‑150 (MQ=255) tCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGga > 2:1514989/1‑150 (MQ=255) cATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGgag > 1:1195187/1‑150 (MQ=255) cATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGgag > 1:4215917/1‑150 (MQ=255) aTTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGgaga > 1:3502665/1‑150 (MQ=255) tGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAgg > 1:2209243/1‑150 (MQ=255) tGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAgg > 1:36628/1‑150 (MQ=255) tGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAgg > 1:605802/1‑150 (MQ=255) gCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAggg < 2:1348889/150‑1 (MQ=255) aaTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCCAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGtt > 2:332966/1‑150 (MQ=255) aaTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAggggt > 2:2506369/1‑148 (MQ=255) aTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTa < 2:2521339/150‑1 (MQ=255) tCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAg < 2:4336292/150‑1 (MQ=255) cTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCTTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGAGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAgg > 1:482222/1‑150 (MQ=255) cTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACA‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAgg > 2:2407417/1‑150 (MQ=255) ctcccgcATCGTGCCTGATGCCCGTCGCGAATCAGGCTTACCGTCGGCCGGATCAGGCGTTCACGCCGCAGCCGGCAAAGTGTTAACC‑GTGGACTGCGTCAAACAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGt < 2:4208171/144‑1 (MQ=38) ccTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAg > 1:4069087/1‑150 (MQ=255) cTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAgg < 1:1638366/150‑1 (MQ=255) cTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAgg < 1:959355/150‑1 (MQ=255) cATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAgggg < 1:3054260/150‑1 (MQ=255) aTCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGGACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGa > 1:651927/1‑150 (MQ=255) tCGTGACTGATGCAATTCGATAATCAGGCTTACCTTAGGCCGGATCAGGCGTTCACGCCGCATCCGTCAATGTTTTAACC‑GTGTACAGATTAAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGTATTGGGTTTGTGTGAGGGGaa < 2:1943620/150‑1 (MQ=255) gTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGaaaa > 1:3282235/1‑150 (MQ=255) ccTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCg > 1:1407286/1‑150 (MQ=255) ccTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGAACAGAGTCAAAAAGTCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCg > 2:3487010/1‑150 (MQ=255) tGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCgtg > 2:2604122/1‑150 (MQ=255) ttgtcTAATCTGGATTACGGTAGGCCGTATCTGGCGTTCACGCCGCATCCGGCAATGTTTTACCG‑TTTTACAGATTAAAAATGGCGCTCGGTCGGACCCCTCGCCCCTGTGGGTTGTGGTTTTGGGTGAGGGGAAAACCGTGTCAGCAat < 2:4157310/146‑1 (MQ=255) ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAat > 2:1569935/1‑150 (MQ=255) ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAat > 2:3157050/1‑150 (MQ=255) cTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCa > 2:2253719/1‑150 (MQ=255) cTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCa > 2:79799/1‑150 (MQ=255) tAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGCGAGGGGTAGGGTGAGGGGAAAACCGTGTCAGCAAGATCaa > 2:2365537/1‑150 (MQ=255) tAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAACCCCGTGTCAGCAATATCaa > 2:2831582/1‑150 (MQ=255) tAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCaa > 1:3206075/1‑150 (MQ=255) aTCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTCCAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGGTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAcc > 2:3528043/1‑150 (MQ=255) tCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGtt > 1:1734177/1‑114 (MQ=255) tCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGtt < 2:1734177/114‑1 (MQ=255) cAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCgt > 2:2462338/1‑150 (MQ=255) cAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCgt > 1:3190022/1‑150 (MQ=255) ggCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCgtgt > 2:582599/1‑150 (MQ=255) ggttACGGTTGGCCGTATCTGGCGTTCACGCCGCTTCCGGAAACGTTTTAACG‑GTTTACAGATTCAAAAGGGCGCTGGGTGGGACCCCTCGCCCCTCGGGGTTTTGGTTTTGGGTGTGGGGAAAACCGTGTCAGCAATATCAACCGTGtt < 2:3977623/148‑1 (MQ=255) tACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAt > 1:2716559/1‑150 (MQ=255) tACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCGGGGGAGAGGGTTAGGGTGAGGGGACAACCGTGTCAGCAATATCAACCGTGTTTAt > 2:3756967/1‑150 (MQ=255) ccGTCGGCCGGATCCGGCGTTCCCGCCGCATCCTGCAAAGTGTTAACC‑GTTTACAGACTCAAAACGGCGCTCGGTCGGGCCCCGCCCCCCTCTGGGGAGTGGGTTCGGGTGCGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAttc < 1:2076009/150‑1 (MQ=255) tcggCCGGATCCGGCTTACACGCCGAAACCGCAAAAGTTTTAACC‑GTGTACAGAGAAAAAACGGCGCTCGGCCGGCCCCCACCCCCCTCGGGGTAGCGGTTTTGGGTGAGGGCAAAACCGTGTCAGCAATATCAACCGTGTTTAttcttc < 1:527107/148‑1 (MQ=255) ggATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCaaaa > 1:4249169/1‑150 (MQ=255) gATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCaaaaa > 1:4339205/1‑150 (MQ=255) gTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCGGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCCATATCAACCGTGTTTATTCTTCGCAAAAACAAcgcgc > 1:2564547/1‑150 (MQ=255) tccACGCCGCATCC‑GCAAATTTTTTACCGGTGAAACGAGAAAAACCGGCGGGCGGTCGGCCCCCTCGCCCCTGGGGGTTGTGGTTTCGGGGGCGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAAcgcgcg < 2:1282644/148‑1 (MQ=255) cACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGcc > 2:2165608/1‑150 (MQ=255) ccgccgcATCCGGAAATTTGTTAACG‑GTGTACATAGTCAAAATGGCGCTCGTAGGGCCCCCTCGCCCCTCGGGGTAGTGGTTTTGGGTGCGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCa < 1:626988/149‑1 (MQ=255) aTCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGtt > 1:459326/1‑150 (MQ=255) tCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTc > 2:1104330/1‑150 (MQ=255) cGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcag > 1:2972629/1‑150 (MQ=255) ggCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagc > 1:999930/1‑150 (MQ=255) cAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcag > 1:4234614/1‑150 (MQ=255) aaaGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcagc > 2:3342149/1‑150 (MQ=255) aaaGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcagc > 1:2224048/1‑150 (MQ=255) gtgtTAACC‑TTGTACAGAGTCAAAACGGCGCTCGGTCGGGCCCCTCGCCCCTCGGGGGAGTGGTTTCGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGt < 2:303748/150‑1 (MQ=255) gtgtTAACC‑GTGTACAGAGTCAACACGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGCGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGACTGTTCAGCAGCAGt < 2:2030128/150‑1 (MQ=255) tgtTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTa > 2:1380927/1‑150 (MQ=255) gtTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTAc > 1:3226013/1‑150 (MQ=255) ttAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACg > 1:1315795/1‑150 (MQ=255) aaCC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGca > 1:3775075/1‑150 (MQ=255) aCC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCACTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGGCAGCAATATCAACCGTGTTTATTCTTCGCTAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGcac > 2:268737/1‑150 (MQ=255) c‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAg > 2:2344928/1‑150 (MQ=255) gtgtACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAgg > 1:3937182/1‑150 (MQ=255) gtgtACAGAGTAAAAACGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTTAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAgg < 2:4239169/150‑1 (MQ=255) gtgtACAGAGAAAACCCGGCGCTCGGTCGGTCCCCTCGCCCCTGGGGGTTGTGGTTTTGGGTGCGGGCAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAgg < 1:2248363/150‑1 (MQ=255) gtccAGAGACAAAACGGCGCTCGTGCGGGCCCCTCGCCCCTCTGGGGTGTGGGTTTGGGTGCGGGCAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGt < 2:3102393/147‑1 (MQ=255) agagTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATg > 1:753568/1‑150 (MQ=255) gagTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGa > 1:414172/1‑150 (MQ=255) tCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCa > 2:3228504/1‑150 (MQ=255) ccAAAACGGCGCTCGGTCGGGCCCCCCGCCCCGCGGGGGCGCGCGTTAGGGTGAGGGGACAACCGTGGCAGCAATATCCCCCGGGTTTATTCTTCGCCAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCa < 2:2880564/149‑1 (MQ=255) acAAAACGGCGCTGGGGCGGTCCCCGCGCCCGTGTGGTTTGTGGTTTTGGGGGCGGGCAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCa < 1:286860/149‑1 (MQ=255) aaaaaGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCACCCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAAt < 2:2729829/150‑1 (MQ=255) aaaaGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATa > 2:3682055/1‑150 (MQ=255) cggtcggtCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCa > 2:4204839/1‑150 (MQ=255) cggggggtcCCCTCGCCCGTGTGGGGTGTGGGTTTGGGTGTGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCa < 1:3977510/145‑1 (MQ=255) ggtcggtcCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAg > 1:3389433/1‑150 (MQ=255) ggtcggtcCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAg > 1:3191810/1‑150 (MQ=255) gcggccCCCTCCCCGCTGTGGGGTGTGGTTTTGGGGGTGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGc < 2:1825570/149‑1 (MQ=255) ggtcCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCa > 1:260556/1‑150 (MQ=255) tcCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGACAACCGTGTCAGCAATATCAACCGTGTGTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAAt > 2:509163/1‑150 (MQ=255) tcCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAAt > 2:4352078/1‑150 (MQ=255) tcCCCACGCCCCTCGGGTGAGTGGTTTCGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAAt < 2:4069087/150‑1 (MQ=255) ccccCGCCCCTCGGGGGAGTGGGTTCGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtg < 1:2007857/150‑1 (MQ=255) ccccCGCCCCGCTGGGGTGTGGTTCTGGGGGCGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtg < 1:3157260/150‑1 (MQ=255) cccTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATAACAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtg > 1:595878/1‑150 (MQ=255) ccTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtgc > 1:3859057/1‑150 (MQ=255) cTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtgct > 1:3786527/1‑150 (MQ=255) cGCCCCTCGGGGGTGTGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtgctgc < 2:1411474/150‑1 (MQ=255) gCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGcc < 2:651927/150‑1 (MQ=255) ctGGTGAGTGGGTTTGGTTGAGGGCAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCg < 2:1526900/150‑1 (MQ=255) | CATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACC‑GTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCG > CP009273/3901718‑3902015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |