| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,997,389 | C→A | 11.3% | M50I (ATG→ATT) | rarD ← | putative chloramphenical resistance permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,997,389 | 0 | C | A | 11.3% | 522.0 / 2.8 | 157 | M50I (ATG→ATT) | rarD | putative chloramphenical resistance permease |
| Reads supporting (aligned to +/- strand): ref base C (113/19); new base A (2/23); total (115/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.39e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 169 total aligned reads displayed.
GCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT > CP009273/3997241‑3997538 | gCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCAccacca > 2:1763974/1‑150 (MQ=255)gCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCAccacca > 2:892034/1‑150 (MQ=255) atatGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATa > 1:3084833/1‑150 (MQ=255) ggTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGa < 1:2205047/150‑1 (MQ=255) ggTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGa < 1:1610879/150‑1 (MQ=255) gTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGaa < 1:3714043/150‑1 (MQ=255) gTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGaa < 1:2914271/150‑1 (MQ=255) aTTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGaaaaa > 2:4259829/1‑150 (MQ=255) ttGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAAc > 1:3065158/1‑150 (MQ=255) ttCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGAc > 2:2642192/1‑150 (MQ=255) tCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGAcc > 1:162315/1‑150 (MQ=255) tCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGAcc > 1:162455/1‑150 (MQ=255) aaCCGCCCATATAAACTGTAGCCATTGGCCACCAATCAGCACGGCAGAGACTGCCAGA‑ATAAAAATTTTCTGTGGCTTCTGAATCAGCTTTTTTAATTTGGACCACGGGCGGAAAA‑T‑GATCACAACAACCCCAATAAAAAAAAACGACCa < 2:235255/149‑1 (MQ=255) aCCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAg > 2:3444101/1‑150 (MQ=255) gATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAATTAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgcg > 1:1420673/1‑150 (MQ=255) gATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAcgcg > 1:1048989/1‑150 (MQ=255) tAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGAt > 2:2460200/1‑150 (MQ=255) tAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGAt > 2:287999/1‑150 (MQ=255) aaaCAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTGTCTGTGGCGTCTGACTCAGCGTTTTTAAATAGGACCACTGGCGGCAAC‑T‑GCTCATCAGCACCACCCTAAAGAACAACGACCAGATCACGCGATg > 2:2960768/1‑150 (MQ=255) aaCAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGc > 2:2699903/1‑150 (MQ=255) aCAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCg > 2:2593603/1‑150 (MQ=255) cAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGt > 1:1903805/1‑150 (MQ=255) aGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTc > 1:3145185/1‑150 (MQ=255) aGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTc > 2:3739892/1‑150 (MQ=255) gctaGTTCCCACCATCCAGAACGGCCGAGACTCCAATC‑ATAAAATTTGTCTGTGCTGACTTATTCATGTTTTTTAATTAGCACACGGGGCGGAATA‑T‑GAACAACTTAACCACCATAACGAAAAACGACCAGATCACGCGATGCGTCAGGa < 2:3587906/147‑1 (MQ=255) aGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGAttt > 1:2351382/1‑150 (MQ=255) aGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGAtgt > 2:3003287/1‑148 (MQ=255) gTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTc > 1:2113290/1‑150 (MQ=255) cccccaATCCGCCCGGAAGAGACTGCCACA‑ATAAAATTTTTGTGTGGGGTGTTAAGCTGGTTTTTTAACTCGGACCCGTGGCGCCAAT‑T‑GCTCAACCCCCCCCCCAAAACTAACCACGACCAGATCACGCGATGCGTCAGGATTTCATcg < 2:2021363/147‑1 (MQ=255) caccaATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATcgg > 1:313387/1‑150 (MQ=255) caccaATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATcgg > 2:2618679/1‑150 (MQ=255) accaATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATcggc > 1:111015/1‑150 (MQ=255) caagccgCACGCCAGACACTCCCAGA‑ATAAATTTTTTGTGTGGCTTATTAATCTGCTTTTTAAAATAGCCCCCGGGGCGTCAAA‑T‑GACCAACCCCACCACAAAAAAAAAACACGACCAGATCACGCGATGCGTCAGGATTTCATcggcgg < 2:550045/144‑1 (MQ=255) aaTCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCggg > 1:2253465/1‑150 (MQ=255) aaTCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCggg > 1:820591/1‑150 (MQ=255) aaTCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCggg > 1:462709/1‑150 (MQ=255) aaTCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCggg > 1:462737/1‑150 (MQ=255) aCGGCAGAGAC‑GCAAACAATAAAATTTTTCTGTGGTTTCTGAAACTGTTTTTTTAAATCTGACCTGGGGC‑GCAAA‑TCGCACACCCCCACCACAAAAAACAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACgtag < 2:3347239/150‑1 (MQ=255) gtgaCTCCCACA‑ATAAAATTTTTCTGTGGCGACTTAATCTGCTTTTTTAAATAGCACCAGGGGGGTCAAA‑T‑GCACAACACAACCACAAAAAACAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATc < 2:3530591/148‑1 (MQ=255) aCTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAAc > 1:2264679/1‑150 (MQ=255) cTGCCAGA‑AAAAAAATTTTCTGGGGCTTCTTAATCTGCTTTTTTAATTAGCACCACTGGCGTCAAA‑T‑GCTCATCACCACCACCAAAAAAAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACt < 2:2156452/150‑1 (MQ=255) tGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACtt > 2:1654258/1‑150 (MQ=255) c‑ATAAAATTTTTCTGTGGCGTCTTAAACTTCTTTTTTAATTAGCA‑CACGGGGCGCAAATT‑GATCATCACCACAAAAAAAAACAAACACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTa < 2:1573069/150‑1 (MQ=255) c‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTa > 1:3556065/1‑150 (MQ=255) c‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTa > 2:661617/1‑150 (MQ=255) c‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTa > 1:3800011/1‑150 (MQ=255) aataataTTTTTCTGTGGGGTCTTAATCTGTTTTTTTAATTAGTACCACTGGGTGAAAA‑T‑GATAAACCGAACCACAATAAACAACAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTa < 2:2416832/149‑1 (MQ=255) aaTAAAATTTTTTTGTGGCGTCTTATTCCGGTTTTTTATTTAGCCCCAGTGGCGGAAAA‑T‑GATAATCACAACCAACTTAATTAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTa < 2:4320224/149‑1 (MQ=255) aaTAAAAATTTGGGGTGGCTTCTTAATCTGCTTTTTTAAATAGCACCAGTGGCGGAAAA‑T‑GCTAATCAGCACCACAAAAAACAAACACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTa < 2:2418804/149‑1 (MQ=255) aTAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAc > 2:1505821/1‑150 (MQ=255) aaTTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTgg > 1:107311/1‑150 (MQ=255) aaTTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTgg > 2:1427496/1‑150 (MQ=255) aaTTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTgg > 2:1427493/1‑150 (MQ=255) aaTTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTgg > 1:992825/1‑150 (MQ=255) aTTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGgc > 2:1177043/1‑150 (MQ=255) tttCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGgcgc > 2:2099301/1‑150 (MQ=255) tttgtgGCGTCTTACTCTGTTTTTTTAAATCGCACCCGGGGCGTAAAA‑T‑CATCACCACCACAACAAAAAACAACCACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCta < 1:2441289/148‑1 (MQ=255) tggggggCGTCTTAATCTGCTTTTTTAAATTGGACCAGGGGCGGAAAA‑G‑GCTCATCACCACCACAATAAATAAACACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCta < 2:3877841/145‑1 (MQ=255) tCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCtc > 2:526706/1‑149 (MQ=255) ggggCGTCTTAATCTGTTTTTTAAATTAGCACCACTGGCGCAAAA‑T‑GAACACCACCACCACAAAAAACAACCACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAc < 1:359504/148‑1 (MQ=255) tgGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAcc > 1:2562492/1‑150 (MQ=255) tgGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAcc > 1:4063128/1‑150 (MQ=255) gTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaa > 1:1888116/1‑150 (MQ=255) tCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTCTACCCCaaa > 1:3335985/1‑150 (MQ=255) tGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaata > 1:1330/1‑150 (MQ=255) gAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataa > 2:692907/1‑150 (MQ=255) aaTCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataaa > 2:232350/1‑150 (MQ=255) tCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataaaat > 2:1874595/1‑150 (MQ=255) cGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGc > 1:2763273/1‑150 (MQ=255) cGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGc > 1:1418176/1‑150 (MQ=255) gTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCg > 1:1296143/1‑150 (MQ=255) gTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCg > 2:2815890/1‑150 (MQ=255) tttAAATTGGACCACTGGCGTAAAT‑T‑GCTCATCAGCACCACAATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCa < 2:1345025/150‑1 (MQ=255) tttAAATCGGACCAGGGGGGGCATA‑T‑GCTCTTCAGCACAAAAATAAATAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCa < 2:1345136/150‑1 (MQ=255) tttAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCa > 2:2550913/1‑150 (MQ=255) aaTAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAagag > 2:1630915/1‑150 (MQ=255) aaTAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAagag > 2:2725582/1‑150 (MQ=255) aaTAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAagag > 2:730905/1‑150 (MQ=255) tAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCg > 1:4216887/1‑150 (MQ=255) agtaCCACTGGCGTAAAA‑T‑GATCATCAGCACCACAATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGa < 2:1403543/147‑1 (MQ=255) aGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGa > 1:2480378/1‑150 (MQ=255) aGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGa > 1:2026483/1‑150 (MQ=255) aGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGa > 1:1287713/1‑150 (MQ=255) ccACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTaa > 2:305436/1‑150 (MQ=255) aCTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa > 1:1359458/1‑150 (MQ=255) cTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAc > 2:633525/1‑150 (MQ=255) gggcgccAAA‑G‑GCAAATCACCACCCAAAAAAAGAAACACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACg < 2:1991402/149‑1 (MQ=255) ggcAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCt > 2:2297194/1‑150 (MQ=255) ggaaact‑GCTCAGCCGCACCACAATAAATAAACACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCt < 2:2284158/144‑1 (MQ=255) aa‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcg > 2:4171347/1‑150 (MQ=255) gCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt > 2:327108/1‑150 (MQ=255) cTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt > 1:3012740/1‑150 (MQ=255) atcatcaGCACCACAATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTACATCGGCGGGCACGTAGTAAATCAACTAGAAGTACGCTCGAGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt > 1:895037/2‑150 (MQ=255) catcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttg > 1:269024/1‑150 (MQ=255) acccccacaaAAAAAAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATGGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGtttt < 1:3436720/146‑1 (MQ=255) aGCACCACAATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGtttt > 2:2906791/1‑150 (MQ=255) accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca > 1:242212/1‑150 (MQ=255) cccaTAAATAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatcc < 2:2883122/149‑1 (MQ=255) accaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatcc > 1:1169111/1‑150 (MQ=255) accaTAAAGAAAAACGACCAGATCACCCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatcc > 1:1168431/1‑150 (MQ=255) | GCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC‑ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAA‑T‑GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT > CP009273/3997241‑3997538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |