Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 320,920 G→A 90.7% S52S (AGC→AGT ykgH ← putative inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273320,9200GA90.7% 480.7 / 32.3 157S52S (AGC→AGTykgHputative inner membrane protein
Reads supporting (aligned to +/- strand):  ref base G (6/8);  new base A (74/67);  total (81/76)
Fisher's exact test for biased strand distribution p-value = 5.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.80e-01

Only 100 of 157 total aligned reads displayed.

TATTTCTCTGTTCTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGATCGATATCCTGTTTGATT  >  CP009273/320773‑321064
                                                                                                                                                   |                                                                                                                                                
tATTTCTCTGTTCTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACt                                                                                                                                                <  2:672396/150‑1 (MQ=255)
   ttCTCTGTTCTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTa                                                                                                                                             <  2:3915359/150‑1 (MQ=255)
      tctGTTCTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAAt                                                                                                                                          <  2:2544751/150‑1 (MQ=255)
         gTTCTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCAc                                                                                                                                       >  2:1752941/1‑150 (MQ=255)
         gTTCTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCAc                                                                                                                                       >  2:3940696/1‑150 (MQ=255)
            cTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACttt                                                                                                                                    <  1:404197/150‑1 (MQ=255)
            cTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACttt                                                                                                                                    <  2:3142539/150‑1 (MQ=255)
               gACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTtat                                                                                                                                 >  1:533115/1‑150 (MQ=255)
                aCATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTtata                                                                                                                                <  1:1632017/150‑1 (MQ=255)
                 cATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTatat                                                                                                                               <  1:3899253/150‑1 (MQ=255)
                  aTCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATAtt                                                                                                                              <  2:3774161/150‑1 (MQ=255)
                    cTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGt                                                                                                                            <  2:2959947/150‑1 (MQ=255)
                       ggCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCtt                                                                                                                         <  1:4034513/150‑1 (MQ=255)
                          tGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTAt                                                                                                                      <  2:963093/150‑1 (MQ=255)
                                gAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTATGCTGTAAATAACTTTTATATtttatttaattttat                                                                                                                >  1:2716433/1‑143 (MQ=255)
                                gAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGatat                                                                                                                <  1:167273/150‑1 (MQ=255)
                                 aaaaaaTGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGAtata                                                                                                               <  2:3295180/150‑1 (MQ=255)
                                 aaaaaaTGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGAtata                                                                                                               >  2:3617854/1‑150 (MQ=255)
                                  aaaaaTGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATAc                                                                                                              <  1:2975099/150‑1 (MQ=255)
                                  aaaaaTGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATAc                                                                                                              >  1:2994824/1‑150 (MQ=255)
                                     aaTGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGa                                                                                                           >  2:1628828/1‑150 (MQ=255)
                                       tGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGaaa                                                                                                         <  2:143883/150‑1 (MQ=255)
                                       tGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGaaa                                                                                                         <  2:1227030/150‑1 (MQ=255)
                                          agtaATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGTaacaa                                                                                                      >  2:900849/1‑150 (MQ=255)
                                          agtaATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaacaa                                                                                                      >  2:4157777/1‑150 (MQ=255)
                                          agtaATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaacaa                                                                                                      >  2:1968621/1‑150 (MQ=255)
                                          agtaATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaacaa                                                                                                      >  2:900843/1‑150 (MQ=255)
                                          agtaATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaacaa                                                                                                      >  2:740686/1‑150 (MQ=255)
                                           gtaATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaacaac                                                                                                     >  2:1734942/1‑150 (MQ=255)
                                            taATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAacaaca                                                                                                    <  1:1921572/150‑1 (MQ=255)
                                            taATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAacaaca                                                                                                    <  1:1922429/150‑1 (MQ=255)
                                            taATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATAAAGAAacaaca                                                                                                    >  1:2682461/1‑150 (MQ=255)
                                            taATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATAACTTTTATATTGTATTTATTGATATAAAGAAacaaca                                                                                                    >  1:2682443/1‑150 (MQ=255)
                                               ttCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCa                                                                                                 >  2:574932/1‑150 (MQ=255)
                                                tCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTATAATGTAAATAACTTTTATATTGTCTTTATTTATATACAGAAAAAAAAGCAc                                                                                                >  1:3338438/1‑150 (MQ=255)
                                                tCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCAc                                                                                                <  2:4261977/150‑1 (MQ=255)
                                                 cGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCAcc                                                                                               >  2:3173173/1‑150 (MQ=255)
                                                    tGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATa                                                                                            >  2:2215415/1‑150 (MQ=255)
                                                    tGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCAATTTTATATTGTCTTTATTGATATACAGAAACAACATCACCATa                                                                                            >  2:40945/1‑150 (MQ=255)
                                                    tGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATa                                                                                            <  2:1910943/150‑1 (MQ=255)
                                                     gAATAACAACTTCAGTCATTGTAGTCTGACAGGCTAAATTATTATTTCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTTTTTTTTCTTTATTGATATACTGAAACAACAGCACCATAg                                                                                           <  1:2500880/150‑1 (MQ=255)
                                                      aaTAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATTTTGTCTTTATTGATATACAGAAACAACAGCACCATAGc                                                                                          <  1:4070912/150‑1 (MQ=255)
                                                       aTAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGcc                                                                                         >  1:3481277/1‑150 (MQ=255)
                                                            aTCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTTTAATGTTTATATTTAGAAAGTAAAAAACTATTATAAATTCTTTATTTATATAAACAAACAAAATCAACATATCcaaaaa                                                                                    >  1:3765715/1‑146 (MQ=255)
                                                                  aGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGc                                                                              <  2:907556/150‑1 (MQ=255)
                                                                  aGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGc                                                                              >  2:1666169/1‑150 (MQ=255)
                                                                   gTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGcc                                                                             <  2:2735968/150‑1 (MQ=255)
                                                                   gTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTGATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGcc                                                                             <  2:508941/150‑1 (MQ=255)
                                                                   gTCATTGTAGTCTGACAGGCAAAATTATGATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGcc                                                                             <  2:921663/150‑1 (MQ=255)
                                                                      aTTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCata                                                                          <  1:2331658/150‑1 (MQ=255)
                                                                        tGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCataat                                                                        <  2:1863986/150‑1 (MQ=255)
                                                                          tAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCAtaataa                                                                      >  1:3187609/1‑150 (MQ=255)
                                                                          tAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCAtaataa                                                                      >  1:3260420/1‑150 (MQ=255)
                                                                          tAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCAtaataa                                                                      >  1:3600099/1‑150 (MQ=255)
                                                                           aGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATaaa                                                                     >  2:3579643/1‑150 (MQ=255)
                                                                           aGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATaaaa                                                                    >  2:2105457/1‑150 (MQ=255)
                                                                            gTCTGACAGGCAAAATGATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATaaaa                                                                    <  1:3718802/150‑1 (MQ=255)
                                                                                 aCAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGAt                                                               <  2:1944668/150‑1 (MQ=255)
                                                                                     gaaaaaTTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAaca                                                           <  1:2623200/148‑1 (MQ=255)
                                                                                      cAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAacac                                                          <  2:2185995/150‑1 (MQ=255)
                                                                                      cAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCAATTTTATATTGTCTTTATTGATATTCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAacac                                                          >  2:2935556/1‑150 (MQ=255)
                                                                                       aaaaTTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAAAAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACg                                                         >  2:1499721/1‑150 (MQ=255)
                                                                                           ttattattGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTGTTTATTTATATACAGAAACAACAGCACCATAGCCATACATATATCCATAATAAAAAGGATAACACGAAta                                                     >  1:3008509/1‑149 (MQ=255)
                                                                                            tattattGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCCTAGCCATACAAATAGCCATAATAAAAAGGATAACACGAATCt                                                    >  1:3117741/1‑150 (MQ=255)
                                                                                            tattattGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCt                                                    <  2:3661965/150‑1 (MQ=255)
                                                                                             attattGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCtt                                                   <  2:432572/150‑1 (MQ=255)
                                                                                             attattGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCtt                                                   <  2:3229658/150‑1 (MQ=255)
                                                                                                attGCTATCACAGCTAACAAGTATACCTGGCGTTTTCTGGTTTATTTTTAGACTTTAAATCAATTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCttttt                                                <  1:3300776/150‑1 (MQ=255)
                                                                                                attGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCttttt                                                <  2:543252/150‑1 (MQ=255)
                                                                                                 ttGCTATCACAGCTAACAAGTATACCTGGCGTTGTGTTGTTTATTTTTTTTCTTTAAATAAATTTTATATTTTCTTTATTTATATAAATAAAAAAAAGCACCATATACATAAATATATCCAAAAAAAAAAAGATAAAAAGAAACatttta                                               >  1:1469197/1‑149 (MQ=255)
                                                                                                 ttGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGTTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttc                                               <  1:3449136/150‑1 (MQ=255)
                                                                                                 ttGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCttttta                                               >  1:1898040/1‑149 (MQ=255)
                                                                                                 ttGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttc                                               <  1:1532021/150‑1 (MQ=255)
                                                                                                 ttGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttc                                               >  2:3946853/1‑150 (MQ=255)
                                                                                                 ttGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttc                                               >  1:1898122/1‑150 (MQ=255)
                                                                                                 ttGCTATCACAGCTAACAAGCATACCTGGCGTTGTCTGGTTTATTTTTATAATGTAAATCACTTTTATATTTTGTTTATTTATATTAATAAAAAAAAGCACCAAATCCAAAAAAATATCCAAAATAAAAATGATAACAAGAATAatttta                                               >  1:1469959/1‑149 (MQ=255)
                                                                                                    cTATCACAGCTAACAAGTATACCTGGCGTTTTAAGGTTTATTTTTAGAAAGTAAAAAAATTTTATAATTTGTTTTTTGTTATACAGAAAAAAAACCAACAAAGACATAAATATAGCCCAATTAAAAAGGATAACAAGAATATTTttatta                                            >  1:2214528/1‑149 (MQ=255)
                                                                                                    cTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttcttc                                            <  2:1444699/150‑1 (MQ=255)
                                                                                                    cTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttcttc                                            <  2:397062/150‑1 (MQ=255)
                                                                                                     tATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCa                                           >  2:853789/1‑150 (MQ=255)
                                                                                                       tCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGa                                         >  2:2404825/1‑150 (MQ=255)
                                                                                                          caGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTATAATTTAAATAACTTTTATATTTTGTTTTTTTATATAAAGAAAAAAAAGCACCCAATCCATAAATATAGCCATAATAAAAAAGATAAAACCAAAAATTTTATTCAGataa                                      >  1:2941499/1‑150 (MQ=255)
                                                                                                          caGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATAACTTTTATATTGTGTTTATTGATATACAGAAACAACAGCACCATAGCCAAAAATATAGCCATAATAAAAACGATAAAACGAAAATTTTTATTCAGataa                                      >  1:798940/1‑150 (MQ=255)
                                                                                                               aaCAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGTACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaaataa                                 <  1:2361019/150‑1 (MQ=255)
                                                                                                                 cAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGAtaaaataaaa                               <  2:2894927/150‑1 (MQ=255)
                                                                                                                 cAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGAtaaaataaaa                               <  2:2897265/150‑1 (MQ=255)
                                                                                                                   aGTATACCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATAACTTTTATATTTTCTTTATTTATATAAAGAAACAAAAGCACCATAGCCATAAATATATACATAATAAAAAGGATAACACGAATCTTTTTCTTAAGATAAAATAAAAtc                             >  1:1029267/1‑150 (MQ=255)
                                                                                                                        aCCTGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATATCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAAt                        >  1:1405029/1‑150 (MQ=255)
                                                                                                                           tGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAg                     <  1:1483283/150‑1 (MQ=255)
                                                                                                                           tGGCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAg                     <  1:1018976/150‑1 (MQ=255)
                                                                                                                            ggCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGa                    >  1:4310747/1‑150 (MQ=255)
                                                                                                                            ggCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGa                    >  1:4310849/1‑150 (MQ=255)
                                                                                                                            ggCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGa                    <  1:1808306/150‑1 (MQ=255)
                                                                                                                            ggCGTTGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGa                    >  1:1137780/1‑150 (MQ=255)
                                                                                                                              cGTTGTCTGGTTTATTTTTAGTCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGATc                  <  2:1304201/150‑1 (MQ=255)
                                                                                                                                ttGTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGATCGa                <  1:940986/150‑1 (MQ=255)
                                                                                                                                  gTCTGGTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGATCGata              >  2:3778946/1‑150 (MQ=255)
                                                                                                                                       gTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGATCGATATCCTg         >  2:1573833/1‑150 (MQ=255)
                                                                                                                                       gTTTATTTTTAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGATCGATATCCTg         >  2:1573868/1‑150 (MQ=255)
                                                                                                                                              tttAGACTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGATCGATATCCTGTTTGAtt  >  2:284380/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
TATTTCTCTGTTCTTGACATCTGGGCTGGTGTGAAAAAATGTAGTAATTCGCTGAATAACATCTTCAGTCATTGTAGTCTGACAGGCAAAATTATTATTGCTATCACAGCTAACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAAATCTCAATCAGATCGATATCCTGTTTGATT  >  CP009273/320773‑321064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: