| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,388,902 | G→T | 91.9% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,388,902 | 0 | G | T | 91.9% | 932.7 / 68.2 | 310 | A558A (GCG→GCT) | mutL | methyl‑directed mismatch repair protein |
| Reads supporting (aligned to +/- strand): ref base G (13/12); new base T (157/128); total (170/140) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.79e-01 | |||||||||||
Only 100 of 310 total aligned reads displayed.
TTGGGTATTGATTTCCAGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTACATCC > CP009273/4388756‑4389048 | tGGGTATTGATTTCCAGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGt > 2:1829933/1‑150 (MQ=255) tGGGTATTGATTTCCAGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGt > 2:3060837/1‑150 (MQ=255) tGGGTATTGATTTCCAGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAAGTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGt > 2:3472083/1‑150 (MQ=255) gggTATTGATTTCCAGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACATGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTg < 2:301286/150‑1 (MQ=255) aTTGATTTCCAGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGAtt > 1:2955031/1‑150 (MQ=255) tGATTTCCAGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTACTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGc > 1:340671/1‑150 (MQ=255) aGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATc < 1:3914492/150‑1 (MQ=255) aGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATc > 2:968748/1‑150 (MQ=255) tCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCtg > 2:1432374/1‑150 (MQ=255) tCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCtg > 2:1433178/1‑150 (MQ=255) cAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCtga > 1:2388943/1‑150 (MQ=255) cAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCtga > 2:243599/1‑150 (MQ=255) aGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCtgat > 1:1577550/1‑150 (MQ=255) aGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCtgat > 1:1339647/1‑150 (MQ=255) aacaGCATGTGACCATCAGGGCAGAGCCTATACCCTTAAGCCAACAAAAAATACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGTCAATATTGCTCAGTGGATTGCACCAAATCTGATGAGCg > 2:3220918/2‑150 (MQ=255) acaGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGa > 2:344513/1‑150 (MQ=255) acaGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGa > 2:3283295/1‑150 (MQ=255) acaGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGa < 2:526365/150‑1 (MQ=255) tgtgACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATgc < 2:396054/150‑1 (MQ=255) agtataGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGt < 1:796695/145‑1 (MQ=255) cATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTg < 1:3326666/150‑1 (MQ=255) tCAGGGCAGTGCCTTTACCCGTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGt < 2:88542/150‑1 (MQ=255) cAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTc < 1:4170596/150‑1 (MQ=255) cAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTc > 2:2959202/1‑150 (MQ=255) cAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATgg < 2:271908/150‑1 (MQ=255) aGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGc > 1:2250265/1‑150 (MQ=255) aGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGc > 1:1687762/1‑150 (MQ=255) gTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGca < 1:3255397/150‑1 (MQ=255) tGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGcac > 1:2289734/1‑150 (MQ=255) tGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGcac < 1:1053662/150‑1 (MQ=255) gCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGcaca > 1:2713912/1‑150 (MQ=255) gCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGcaca > 2:4213243/1‑150 (MQ=255) ttACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGcc > 1:2104146/1‑150 (MQ=255) ttACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGcc < 1:581136/150‑1 (MQ=255) aCCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCAt > 2:1808658/1‑150 (MQ=255) aCCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCAt > 2:471733/1‑150 (MQ=255) tACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAAccc > 1:91858/1‑150 (MQ=255) cGCCAACAAAATTTACAACTCTTGATTCCTGACCTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCctg < 2:1255832/150‑1 (MQ=255) ccAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCctgct < 1:2783367/150‑1 (MQ=255) ccAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCctgct > 1:1645994/1‑150 (MQ=255) caacaaAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCctgctg < 2:2217942/150‑1 (MQ=255) caacaaAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCctgctg > 1:3085387/1‑150 (MQ=255) acaaAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGc > 2:2738835/1‑150 (MQ=255) caaAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCg < 1:3338393/150‑1 (MQ=255) aaaaTTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCgg > 1:3547638/1‑150 (MQ=255) aaTTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGAc > 2:1350372/1‑150 (MQ=255) ttACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTg < 2:2124805/150‑1 (MQ=255) cAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGac > 2:4317084/1‑149 (MQ=255) aaaTCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAAc < 1:2023126/150‑1 (MQ=255) aTCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACgg > 2:3792404/1‑150 (MQ=255) aTCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGAATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATATGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACgg > 2:1021182/1‑150 (MQ=255) cTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGtt > 1:526863/1‑150 (MQ=255) ttGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCTATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTa < 1:1734173/150‑1 (MQ=255) tGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTAt < 2:2284027/150‑1 (MQ=255) tGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTAt < 1:1326470/150‑1 (MQ=255) ttCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTc > 1:1276193/1‑150 (MQ=255) ttCCTGAACTGATAGGCTACCTGGCGAAACAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTc < 2:815226/150‑1 (MQ=255) ccTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCg < 1:3513730/150‑1 (MQ=255) acTGAACAGATAGTCTAACTGTCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCAAGAAATCTGATGAGCGAACATGCTCAGAGGTCAATGGCAAAGGCAATAACACTGCTTGCGGACGTGGAAAGGTTATGTcag > 1:3741362/2‑148 (MQ=255) cTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGc > 1:1807798/1‑150 (MQ=255) cTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGc > 2:2170765/1‑150 (MQ=255) tGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCa > 2:2495832/1‑150 (MQ=255) tGAACTGAGAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCa < 2:2663018/150‑1 (MQ=255) aaCTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAAc > 1:4042955/1‑150 (MQ=255) aCTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACt < 2:2138874/150‑1 (MQ=255) aCTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACt < 2:1729641/150‑1 (MQ=255) tGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTtg < 1:1384249/150‑1 (MQ=255) gATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTtgt < 2:3642686/150‑1 (MQ=255) aTAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTtgtg > 2:3876033/1‑150 (MQ=255) aTAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTtgtg < 1:4233339/150‑1 (MQ=255) aTAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTtgtg > 2:2385858/1‑150 (MQ=255) aGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGaa > 2:625887/1‑150 (MQ=255) aGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGaa > 1:1945764/1‑150 (MQ=255) aGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGaa > 2:3691921/1‑150 (MQ=255) cTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAAc < 1:1432374/150‑1 (MQ=255) cTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAAc < 1:1433178/150‑1 (MQ=255) tACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAAcg < 2:1573426/150‑1 (MQ=255) tACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAAcg > 2:743295/1‑150 (MQ=255) gCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGccgccg < 2:2101825/150‑1 (MQ=255) aaGCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGggt > 2:4089653/1‑150 (MQ=255) gCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGggtgg > 2:1090921/1‑150 (MQ=255) gCAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGggtgg > 2:220012/1‑150 (MQ=255) cAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGTGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGggtggt > 1:3954090/1‑150 (MQ=255) cAGTCCGTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGggtggt < 2:340691/150‑1 (MQ=255) gTATTCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTa > 2:3044006/1‑150 (MQ=255) ttCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACaa < 2:1165529/150‑1 (MQ=255) tCGAACCTGGCAATTTTGCTCTGTGGATTGCACGAAATCTGAGGAGCGAACATGCGCTGTGGTCATTGGCACAGGCCATAACCCTGGTGGCGGACGTGGAAGGGTTTTGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAAt < 1:3376517/150‑1 (MQ=255) tCGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAAt > 1:1096258/1‑150 (MQ=255) cGAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATc > 2:283122/1‑150 (MQ=255) gAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCt > 1:413160/1‑150 (MQ=255) gAACCTGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCt > 1:443196/1‑150 (MQ=255) tGGCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGa > 2:2889514/1‑150 (MQ=255) ggCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGAt > 1:1991450/1‑150 (MQ=255) ggCAATATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGAt > 1:1155940/1‑150 (MQ=255) cAATATGGCTCTGTGTATTGCACTAAATCTGATGAGCGAACATGCGCAGTGGTCAAGGGCACCGCCCATACCCCTGGTGGCGGACGTGGAACGTTTATGTCCGCAACTTGTTAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGAttt < 1:2978062/150‑1 (MQ=255) aaTATTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTa > 2:2515988/1‑150 (MQ=255) atatTGCTCTGGGGATTGCACTAAATCTGATGAGCGAACATGCGCTGTGTTAAATGGACCCGGCCATAACCCTGCTGGGGGAGGTGGAACGGTTTGGTCCGCAAGTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTAc < 1:1839912/150‑1 (MQ=255) tatTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTACa > 1:429257/1‑150 (MQ=255) atTGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTACAt < 2:4178351/150‑1 (MQ=255) tGCTCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTACATcc > 2:3378029/1‑150 (MQ=255) | TTGGGTATTGATTTCCAGTCAGATGCACAGCATGTGACCATCAGGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTACATCC > CP009273/4388756‑4389048 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |