| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,156 | C→G | 6.9% | intergenic (‑90/+505) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,156 | 0 | C | G | 6.9% | 738.7 / 10.1 | 250 | intergenic (‑90/+505) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (55/175); new base G (13/7); total (68/182) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.52e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 251 total aligned reads displayed.
GGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGA > CP009273/360008‑360302 | gCACTTCACCGCTTGCCAGCGGCTTACCATCCCGCGCCACCATCCAGTGCTGGAGCTCCTATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCGGGCAGTTTTTGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCtt < 1:3230948/150‑1 (MQ=38) ctactcaggagagcgttcacccacaaacaacccataaaacgaacgccccagtctttcgactgagcctttctttttatttgatgcctggggaattAA‑TACCTGGAATTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTc > 2:541034‑M1/95‑150 (MQ=255) tactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCg < 2:2221220‑M1/57‑1 (MQ=255) tactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCg < 2:46034‑M1/57‑1 (MQ=255) tCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCaa > 1:868165/1‑150 (MQ=255) tCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCaa > 1:4272798/1‑150 (MQ=255) caggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc < 1:2497959‑M1/61‑1 (MQ=255) cACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc > 2:4057812/1‑150 (MQ=255) cggttGCCAGCGGCTTACCACCCCGCGCCACCATCCAGGGCAGGAGCTCCTATTATAAGCTGTAAAACATGATAATTCCGACCCCCAA‑TTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGtt < 1:3862973/147‑1 (MQ=25) gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc < 2:4242769/150‑1 (MQ=255) gCTTGCCAGCGGCTTACCACCCCGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGAAAAACATGAGAATTCCGATCCCCAA‑TCCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc < 2:2545200/150‑1 (MQ=37) cTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCGCCACCTTcc > 1:3275158/1‑149 (MQ=255) ttGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa < 2:2771984/150‑1 (MQ=255) gCCAGGGGCTTACCATCCCGCGCCACCATCCCGGGCTGGAGCTCCGTGGATACGCTGTCAAACATGAGAATGCCGATCCCCAA‑GTCCTGGATTTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt < 1:2370998/150‑1 (MQ=21) cAGCGGATTACCATCCCGCGCCACCCTCCTGTGCTGGAGCTCCGATTATAAGGTGACAAACATCAGAATCCCGACCCCCAC‑TGCCGGGCTGTTTATGGGGGGCGACCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc < 1:945466/150‑1 (MQ=18) aGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCg < 2:1695711/150‑1 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAAGGTAAAATACCCTc > 1:3483453/1‑150 (MQ=37) cgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGGTAAAATCCGCTcc < 2:1453350‑M1/76‑1 (MQ=255) tACCCTCCAGCGCCACCATCCTGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg < 1:3629873/150‑1 (MQ=255) caaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTGAGCAACGTTCAaatacgcagcccg < 1:1181588‑M1/79‑7 (MQ=255) caaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtgttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGGGCTTGGCCACCTTCAAAACCGCTCCcgg < 2:67226‑M1/79‑1 (MQ=255) aacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGGAACGTTCAAAGCCGGTCgcggcg < 2:4265703‑M1/81‑1 (MQ=255) caacagataaaacgaaaggccccgtctttcgactgagcctttcgtgttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGGGCGTCGCACCGTTCAACTCCGCTCccggcggc < 2:3032383‑M1/83‑2 (MQ=255) aTCCCGCGCCCCCAGCCTGTGCTGTAGCTCCGATGATAAGCTTTCAAACATGACATTTCCGACCCCCAT‑TGCGTGGATGTTTTGGGGGGGGGTCCTGCCCCCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGa < 1:1868303/150‑1 (MQ=12) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt < 2:4211995/150‑1 (MQ=255) aacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt < 2:1766945‑M1/84‑1 (MQ=255) ccccccaTCCCGGGCCGGAGCTCCGATTATAAGCTGACAAACATTATAATTCCGACCCCAAT‑TTCCTGGCTGTTTCTGGGGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:3424279/146‑1 (MQ=17) ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCt > 1:3585621/1‑150 (MQ=255) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGGTTCGCAACCGTCAAATAAGCACCCCGCGGCtttttgcaa > 1:2679555/1‑144 (MQ=25) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCGCAACCGTCAAATACGCGCCCCGCGGATTTGtacaa > 1:2796548/1‑146 (MQ=25) accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTAc < 1:4297579/150‑1 (MQ=255) aacgaaaggcccagtctttcgactgagcctttcgttttatttgatgccgggggaattCA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCCACGTTCCGTTCCGGTCCCGGCGGAGTTGTCCTAc < 2:4178909‑M1/93‑1 (MQ=255) tccccgTGCTGGTGCTCCGTTGATAAGCTGACAAACTTGATATTTCCGAACCCAAA‑TTCCGGGCTTTTTTTGGGGGGGGTCCTGCCCCCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCa < 1:3360574/145‑1 (MQ=17) gaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAT‑TTCCTGTCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACCTTCAAATCCGCTCCCGGCGGCTTTGTCCTCCTCa < 2:798844‑M1/96‑1 (MQ=255) aTCCTGTGCTGGAGCTCCGATGATATGCTGACAAACATGAGAATTCCGACCCCCAA‑TTCCTGGCAGTTTTGGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCa < 1:2318901/150‑1 (MQ=18) aaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGTGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAgg < 2:3978897‑M1/98‑1 (MQ=255) aaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGTGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAACCGCTCCCGGCGGATTTGTACTACTCAgg < 2:3337770‑M1/98‑1 (MQ=255) ggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCg > 2:2499876‑M1/51‑122 (MQ=255) ggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACGCTCCCGGCGGAGTTGTCCTACTcaggcg < 2:4021669‑M1/100‑3 (MQ=255) cgTGCCGGAGCTCCGATGATACGCTGTCAAACATGAGAATTCCGATCCCCAA‑GTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgag < 2:3611716/149‑1 (MQ=255) tGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCGCCACCTTCAAATACCCAACCCGCGGATTTGTCCGACACACgagat > 1:4178292/1‑149 (MQ=21) ccagtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCGCAACCATAAAAAACGCTCCCCGCCGCTTTGTGCAACACAGGCGAGc < 1:4155751‑M1/103‑1 (MQ=255) cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCg > 2:3012410/1‑150 (MQ=255) agtctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt < 2:4260217‑M1/105‑1 (MQ=255) aGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt < 2:3544064/150‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt < 2:1972622/150‑1 (MQ=255) ctttcgactgagcctttggttttatttgatgcgtggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCa > 1:2134028‑M1/43‑150 (MQ=255) ctttcgactgagcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGGTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCa < 2:2306637‑M1/108‑1 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCa < 2:3813323/150‑1 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCATTTTCTGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc < 1:1322095/150‑1 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTGGCAACCTTAAAATACGGACCCGGCGGCTTTTTGGTAAACAGGTGGGCGTTAACACacaaa > 2:370003/1‑150 (MQ=18) tatAAGCTGTAAAACAGGACAATTCCTATCCCAAA‑TACGTGGCATTTTATGGCGGGCGTCCGCCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaac < 1:456309/149‑1 (MQ=14) agcctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaaca < 2:2504106‑M1/118‑1 (MQ=255) cctttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAAGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCAAaacaac < 2:1570209‑M1/120‑1 (MQ=255) tttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAg < 2:4285960‑M1/122‑1 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAg < 2:92621/150‑1 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAg < 1:1674890/150‑1 (MQ=255) ttcgttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAACCGCTCCCGGCGGATTTGTCCTACACAGGAGTGCGTTCACCGACAAACCACAGa < 1:3995563‑M1/123‑1 (MQ=255) tCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa < 2:3915038/150‑1 (MQ=255) ttttatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCGACTCAGGAGAGCGTTCACCGACCAACCCCAGATaaa < 2:3705473‑M1/127‑1 (MQ=255) aaCATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc < 2:3823060/150‑1 (MQ=255) aaCATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc < 2:2671572/150‑1 (MQ=255) aaCATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc < 2:242535/150‑1 (MQ=255) aaCATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTAGCAAACTTAAAAAACGCGACCCGCGGAGTTTTGCAACTAAGGAGAGCGTTAAACGACCAACAACACAAAAAAc > 1:2253553/1‑150 (MQ=12) tatttgatgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg > 1:4260217‑M1/21‑150 (MQ=255) aCATGAGAATACCGATCCCCAA‑TTCCTGGCAGTTTAGGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg < 1:3846884/150‑1 (MQ=255) cATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGCGCGTTCACCGACAAACAACACATAAAACGa > 2:1523453/1‑150 (MQ=255) tgatgcctgggtaattAA‑TTCGTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg > 2:3657642‑M1/17‑150 (MQ=255) gatgcctggggatttAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGAAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg > 2:2953981‑M1/16‑150 (MQ=255) gaATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCCCAACGTTCAAATCCCCTCCCGGCGGATTTGTCCTACGCAGGCGCGCGGTCTCCGCCAAACCCCAGATAAGAAGAAAGGc > 1:2860867/1‑150 (MQ=14) atgcctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACGCTCCCCGCGGCTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAAGAAAGGc < 2:3372534‑M1/136‑1 (MQ=255) ctggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAg < 2:311023‑M1/140‑1 (MQ=255) tggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCa < 2:3506708‑M1/66‑1 (MQ=255) tggggaattAA‑TCCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTAATCAGGAGAGGGTTAACCGACAAACAACAGATAAAAAGAAAGGCCCAGt < 1:2463217‑M1/141‑1 (MQ=255) ggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa > 1:1051097‑M1/9‑133 (MQ=255) ggggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa < 2:1051097‑M1/125‑1 (MQ=255) gggaattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt > 1:1766945‑M1/8‑150 (MQ=255) gATCCCCAA‑TTCCTGGCTGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 2:1105129/150‑1 (MQ=255) aTCCCCAT‑TTCGTGGCTGTTTTGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt < 1:2666175/150‑1 (MQ=11) aTCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt < 2:4136492/150‑1 (MQ=38) aTCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt < 2:2155885/150‑1 (MQ=38) aTCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCGCAACGGTCAAAACCCCTCCCGGCGGCGTTGTCCCACGCCGGCGAGCGGTCCCCGACAAACCACAGATAAAACCAAAGGCCCCGTCtt > 2:3679593/1‑150 (MQ=11) accccAATTTCCTGGCTGTTTTTGGCGGGCGTCCTGCCCCCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt < 1:490327/149‑1 (MQ=11) aattAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACGCTCCCGGCGGATTTGTCCTACACAGGAGAGCGGTAACCGACAAACAACAGATAAAAACAAAAGCCCACTcttta < 2:2563305‑M1/146‑2 (MQ=255) attAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACACCAGCTAAAACGCAAGGCCCAGTCTTTCg < 2:4199050‑M1/147‑1 (MQ=255) cAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc < 1:2882237/150‑1 (MQ=33) aa‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 2:1819434/150‑1 (MQ=32) aa‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTGGCAAAGGTCAAAACCGCGCCCGGCGGGTTTGTCCTACACAGGAGGGCGTTCACCGCCCAACCACAGATAAAACGCAAGGGCCAGTCTTTCGTCt > 1:1999055/1‑150 (MQ=11) atttCCTGGCTTTTTCTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 1:843478/148‑1 (MQ=9) a‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTg > 2:2412019/1‑150 (MQ=32) tagggcgggcgCCCGCCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACCCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGACAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:2958077/147‑1 (MQ=1) tGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:2418664/150‑1 (MQ=11) gCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAGCCGCTCCCGGCGGATTGGTCCTCCTCAGGAGAGCGTTCACCGACAAACAACAGATAAACCGAAAGGCCCAGTCTTTCGACTGAGCCGTTCGTTTTATTTGATGCCTgggg < 2:2931970/150‑1 (MQ=11) cccccccACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAGCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg < 1:35423/149‑1 (MQ=14) cccccACCCTCCGGGCCGGTGCTTCGCAACGTTCAACTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:2718110/147‑1 (MQ=12) cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:3012410/150‑1 (MQ=33) cGCCACCCGCCGGGCCGTTGCATCGCAACGTACAACTCCGCGCCCGGCGGATTGGTCCTACTCAGGAGAGCGTTCACCGACAAACACCAGATAACACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 2:1903363/150‑1 (MQ=11) gCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAACTCCGCTCCCGGCGGACTGGTCCGACTCAGGAGAGCGTTCACCGACAAACAACAGATACAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt < 2:2094991/150‑1 (MQ=11) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattg > 1:3932847/1‑134 (MQ=35) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattg > 1:3339285/1‑134 (MQ=35) | GGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAA‑TTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGA > CP009273/360008‑360302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |