| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,181 | G→C | 8.6% | intergenic (‑115/+480) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,181 | 0 | G | C | 8.6% | 721.0 / 11.7 | 234 | intergenic (‑115/+480) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (68/143); new base C (13/10); total (81/153) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.54e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 242 total aligned reads displayed.
TTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAT > CP009273/360032‑360330 | acaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCAACGTTCCAATCCGCACCcg < 2:2555649‑M1/78‑1 (MQ=255) tACCCTCCAGCGCCACCATCCTGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg < 1:3629873/150‑1 (MQ=255) aacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTTCTTCGCAACGTTCAAATCCGCTCCcggcg < 2:1868874‑M1/81‑1 (MQ=255) caacagataaaacgaaaggccccgtctttcgactgagcctttcgtgttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGGGCGTCGCACCGTTCAACTCCGCTCccggcggc < 2:3032383‑M1/83‑2 (MQ=255) aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGa < 2:4134265/150‑1 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGATAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt < 1:2816749/150‑1 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGATTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt < 1:4304120/150‑1 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt < 2:4211995/150‑1 (MQ=255) ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc < 2:4261715‑M1/89‑1 (MQ=255) ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCt > 1:3585621/1‑150 (MQ=255) aaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa < 1:3891289‑M1/92‑1 (MQ=255) aacgaaaggcccagtctttcgactgagcctttcgttttatttgatgccgggggaattCATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCCACGTTCCGTTCCGGTCCCGGCGGAGTTGTCCTAc < 2:4178909‑M1/93‑1 (MQ=255) acgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTAGCAACGTTCAAATAAGCTCCCGGCGGATttgtccaaca < 2:1473315‑M1/94‑5 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTGAGCCACGTTCAAAACCGGTCCCGGCGGGTGTGTCCtacac < 1:2717108‑M1/95‑3 (MQ=255) caTCCAGTGCAGGCGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGGGTCGCAACGTTAAAAAACGCGCCCCGCGGCTTTGTCCTAcac > 1:2393267/1‑148 (MQ=21) aTCCTGTGCTGGAGCTCCGATGATATGCTGACAAACATGAGAATTCCGACCCCCAATTCCTGGCAGTTTTGGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCa < 1:2318901/150‑1 (MQ=18) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAACCGCTACCGGCCGATTTGTCCTACTCacg > 1:2453286/1‑148 (MQ=255) aaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGTGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAgg < 2:3978897‑M1/98‑1 (MQ=255) aaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGTGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAACCGCTCCCGGCGGATTTGTACTACTCAgg < 2:3337770‑M1/98‑1 (MQ=255) tGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCGCCACCTTCAAATACCCAACCCGCGGATTTGTCCGACACACgagat > 1:4178292/1‑149 (MQ=21) cccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACGCTCCCGGCGGCGTTGTCCTACTCAGGagag < 2:451555‑M1/102‑1 (MQ=255) cccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCGCAACGGTCAATGCCGCTCCCGGCGGATTGGTCCTACTCAGGagag < 2:2624265‑M1/102‑1 (MQ=255) ccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCGCAACCATAAAAAACGCTCCCCGCCGCTTTGTGCAACACAGGCGAGc < 1:4155751‑M1/103‑1 (MQ=255) cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCg > 2:3012410/1‑150 (MQ=255) agtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt < 2:4260217‑M1/105‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt < 2:1777384/150‑1 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCa < 2:3813323/150‑1 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCTTTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc < 1:2672244/150‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGTGCGTTCACCg > 2:2418664/1‑150 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTGGCAAACTTGAAATACGCAACCCGCGGATTTGTGCAAATCAAGGGAGCGGTGACCCacaaa > 2:370002/1‑150 (MQ=18) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCGCAACGTTCAAATCCGCGCCCGGCGGCTTTGTCCGACGCAGGAGCGCGTTCACCGacaaa > 2:804647/1‑150 (MQ=18) tatAAGCTGTAAAACAGGACAATTCCTATCCCAAATACGTGGCATTTTATGGCGGGCGTCCGCCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaac < 1:456309/149‑1 (MQ=14) agcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaaca < 2:2504106‑M1/118‑1 (MQ=255) agcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAACTTAAAAAACGCTCCCGGCGGGTTTTTCCAACTCAGGAGAGCGTTCACccacaaaaa < 1:942977‑M1/118‑3 (MQ=255) tAAGCTCACAAACATGAGAATACCGACCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaacaa < 1:1951313/150‑1 (MQ=255) cctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAAGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCAAaacaac < 2:1570209‑M1/120‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGGGTCGCAACCTTCAAATACGCGCCCCGCGGATTTGTGCAACAAAGGAGAGCGGTAAACCacaaacaaa > 1:3521524/1‑149 (MQ=17) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAg < 2:92621/150‑1 (MQ=255) gCTGTCAAACATGAGAAGTCCGATCCCCAATTCCTGGATGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAg < 1:1674896/150‑1 (MQ=255) ttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAACCGCTCCCGGCGGATTTGTCCTACACAGGAGTGCGTTCACCGACAAACCACAGa < 1:3995563‑M1/123‑1 (MQ=255) tCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa < 2:3915038/150‑1 (MQ=255) ttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCGACTCAGGAGAGCGTTCACCGACCAACCCCAGATaaa < 2:3705473‑M1/127‑1 (MQ=255) cAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACCTTAAAATCCGCACCCCGCGGATTTGTCCTACTCAGGAGATCGTTAAACGACACACAACAGATaaa > 2:3641361/1‑150 (MQ=17) aaaaATGAGAATTCCTATCCCAAATTCCTGGCAGTTTTTGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa < 2:2180778/150‑1 (MQ=14) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc < 2:3485365/150‑1 (MQ=255) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTAGCAAACTTAAAAAACGCGACCCGCGGAGTTTTGCAACTAAGGAGAGCGTTAAACGACCAACAACACAAAAAAc > 1:2253553/1‑150 (MQ=12) tatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg > 1:4260219‑M1/21‑150 (MQ=255) tgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACCTTCAAAAACGCTCCCGGCGGATTTGTCCTACACAGGAGAGCGGTCAACCCCCAACCACAGATAAaaagaaag < 2:764703‑M1/134‑1 (MQ=255) gatgcctggggatttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGAAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg > 2:2953981‑M1/16‑150 (MQ=255) atgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACGCTCCCCGCGGCTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAAGAAAGGc < 2:3372534‑M1/136‑1 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCTTCGCAACGGTGAAATACCCTCCCCGCGGCTTTGTGCTAATCAGGAGAGCGTTCACCCACAAACAAAAGATAAAAACAAAGGcc < 2:35423‑M1/137‑1 (MQ=255) ttCCGATCCCCAATTCCTGGCAGTTTATGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCa < 2:564014/150‑1 (MQ=255) ctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAg < 2:310959‑M1/140‑1 (MQ=255) tggggaattAATCCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTAATCAGGAGAGGGTTAACCGACAAACAACAGATAAAAAGAAAGGCCCAGt < 1:2463217‑M1/141‑1 (MQ=255) ggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa > 1:1051458‑M1/9‑133 (MQ=255) ggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa < 2:1051097‑M1/125‑1 (MQ=255) ggtaattAATTCGTGGCTGTTTTTGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGTTTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt > 1:3337770‑M1/8‑150 (MQ=255) gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt > 1:1766945‑M1/8‑150 (MQ=255) gATCCCCAATTCCTGGCTGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 2:1105129/150‑1 (MQ=255) aTCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt < 2:2155885/150‑1 (MQ=38) aTCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt < 2:4136492/150‑1 (MQ=38) aTCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCGCAACGGTCAAAACCCCTCCCGGCGGCGTTGTCCCACGCCGGCGAGCGGTCCCCGACAAACCACAGATAAAACCAAAGGCCCCGTCtt > 2:3679593/1‑150 (MQ=11) cccAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg < 1:3970826/150‑1 (MQ=25) attAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACACCAGCTAAAACGCAAGGCCCAGTCTTTCg < 2:4199050‑M1/147‑1 (MQ=255) ttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa > 2:2497959‑M1/3‑150 (MQ=255) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 2:1743458/150‑1 (MQ=34) cAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc < 1:2882237/150‑1 (MQ=33) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTGGCAAAGGTCAAAACCGCGCCCGGCGGGTTTGTCCTACACAGGAGGGCGTTCACCGCCCAACCACAGATAAAACGCAAGGGCCAGTCTTTCGTCt > 1:1999055/1‑150 (MQ=11) tagggcgggcgCCCGCCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACCCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGACAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:2958077/147‑1 (MQ=1) gCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAGCCGCTCCCGGCGGATTGGTCCTCCTCAGGAGAGCGTTCACCGACAAACAACAGATAAACCGAAAGGCCCAGTCTTTCGACTGAGCCGTTCGTTTTATTTGATGCCTgggg < 2:2931970/150‑1 (MQ=11) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:2718167/150‑1 (MQ=32) cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:3012410/150‑1 (MQ=33) gCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAACTCCGCTCCCGGCGGACTGGTCCGACTCAGGAGAGCGTTCACCGACAAACAACAGATACAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt < 2:2094991/150‑1 (MQ=11) gCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt < 1:3453626/150‑1 (MQ=34) ttGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATGGGGAATTAATTCTTGa > 1:2884406/1‑150 (MQ=255) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattg > 1:3339450/1‑134 (MQ=35) ttCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGACTTGGGAATTAATTCTTGAAGAc > 2:636387/1‑150 (MQ=255) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACg < 2:1635946/150‑1 (MQ=255) cGCAACGTTCAACTCCGCGCCCGGCGGATTTGTCCTACGCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGa < 1:136133/150‑1 (MQ=255) gCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTGGTTTTATTTGATGCCTGGGGAAGTGGGAATTAATTCTTGTAGACGaa > 1:4094784/1‑150 (MQ=255) gaaCTTTAAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAACCAAAAGATAAAACGACAGGCCCAGTCTTTAGACTGAGCCTTTCGTTTTATTTGATGCCTGTGGAATTGGGAATTAATTCTTGAAGACGaaa < 1:1360970/149‑1 (MQ=17) aCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATACAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAgg < 2:1913019/150‑1 (MQ=255) cGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTGTCGTGTTATTTGATGCCTGGGGAAGTGGGAATTAATTCTTGAAGACGAAAggg > 1:599657/1‑150 (MQ=255) cAAACCCGCCCCCGGCGGATTGGTCCTACTCCGGAGAGCGTACACCGACAAACCACAGATAAAACGACAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGTAATTAATTCTTGAAGACGAAAGGGCCTc < 1:764703/150‑1 (MQ=17) aaTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGa > 2:136131/1‑139 (MQ=255) tCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTGTCGTTTTATTTGATGCCTGGGGACTTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGa > 1:1769771/1‑150 (MQ=255) ccGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATCAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATGGGGAATTAATTCTTGAAGACGAACGGGCCTCGTGAt > 2:2708582/1‑150 (MQ=255) ccGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAt < 1:4285960/150‑1 (MQ=255) cGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGACTTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATa > 2:2791204/1‑150 (MQ=255) cGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATa > 1:3141250/1‑150 (MQ=255) gCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATAc > 1:1042341/1‑150 (MQ=255) cgcccGGCGGATTTGTCCTACTCCGGAGAGCGTTAACCGAAAAACAACAGATACAAGGAATGGCCCTGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTATTTCTTTAAGACGAAAGGGCCTCGTGATACg < 1:2561761/148‑1 (MQ=18) cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGACTTAATTCTTGAAGACGAAAGGGCCTCGTGATACg > 1:878425/1‑150 (MQ=255) cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTTATTCTTGAAGACGAAAGGGCCTCGTGATCCg > 2:3789762/1‑150 (MQ=255) cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACg < 2:3593255/150‑1 (MQ=255) tCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGACTTGGGAATTATTTCTTGAAGACGATAGGGCCTCGTGATACGc > 2:3146632/1‑150 (MQ=255) tCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGc > 2:86559/1‑150 (MQ=255) tCCCGGCGGATTTGTCCAACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCGTTCGACAGAGCCTTTCGTGTTATTTGAAGCCTGGGGCATTGGGACGTAATTCTTGAAGACGAACTGGCCTCGTGATACGc > 1:1271556/1‑150 (MQ=17) cccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGcc > 2:2810593/1‑150 (MQ=255) ggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACCACAGATACAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAt < 2:2340252/150‑1 (MQ=255) | TTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAT > CP009273/360032‑360330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |