Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 523,947 G→A 16.7% pseudogene (540/708 nt) rhsH → pseudogene, Rhs familly protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273523,9470GA16.7% 556.2 / 85.3 203pseudogene (540/708 nt)rhsHpseudogene, Rhs familly protein
Reads supporting (aligned to +/- strand):  ref base G (70/99);  new base A (20/14);  total (90/113)
Fisher's exact test for biased strand distribution p-value = 8.77e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 203 total aligned reads displayed.

TGATCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAG  >  CP009273/523800‑524095
                                                                                                                                                   |                                                                                                                                                    
tGATCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCt                                                                                                                                                    <  2:4004254/150‑1 (MQ=255)
 gATCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTa                                                                                                                                                   <  2:2774441/150‑1 (MQ=255)
 gATCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTa                                                                                                                                                   <  1:3472180/150‑1 (MQ=255)
  aTCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCTAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTAt                                                                                                                                                  <  2:657226/150‑1 (MQ=255)
  aTCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCTAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTAt                                                                                                                                                  <  2:655448/150‑1 (MQ=255)
  aTCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTAt                                                                                                                                                  <  1:999297/150‑1 (MQ=255)
  aTCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTAt                                                                                                                                                  >  2:1095239/1‑150 (MQ=255)
   tCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATc                                                                                                                                                 >  1:2278875/1‑150 (MQ=255)
    cAATTTTTCCATTGTATGGCTTTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATcc                                                                                                                                                <  2:2710337/150‑1 (MQ=255)
    cAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATcc                                                                                                                                                <  2:2025512/150‑1 (MQ=255)
    cAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTGAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATcc                                                                                                                                                <  1:2960918/150‑1 (MQ=255)
     aaTTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATccc                                                                                                                                               >  1:1254160/1‑150 (MQ=255)
      aTTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCa                                                                                                                                              >  2:2316358/1‑150 (MQ=255)
      aTTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCa                                                                                                                                              >  1:1491082/1‑150 (MQ=255)
      aTTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCa                                                                                                                                              >  2:1919407/1‑150 (MQ=255)
       tttttCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCAt                                                                                                                                             <  2:3688937/150‑1 (MQ=255)
         tttCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTc                                                                                                                                           >  1:399441/1‑150 (MQ=255)
         tttCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTc                                                                                                                                           <  1:21565/150‑1 (MQ=255)
             cATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGATAGGGCTTGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGaa                                                                                                                                       <  2:2324937/150‑1 (MQ=255)
               ttGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAAt                                                                                                                                     >  1:833919/1‑150 (MQ=255)
               ttGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAAt                                                                                                                                     <  1:3605381/150‑1 (MQ=255)
               ttGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAAt                                                                                                                                     <  2:3318112/150‑1 (MQ=255)
               ttGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAAt                                                                                                                                     <  2:3500074/150‑1 (MQ=255)
               ttGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAAt                                                                                                                                     <  2:1019019/150‑1 (MQ=255)
               ttGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAAt                                                                                                                                     <  1:4273095/150‑1 (MQ=255)
                 gTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGa                                                                                                                                   >  2:495437/1‑150 (MQ=255)
                  tATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGAt                                                                                                                                  <  1:1153991/150‑1 (MQ=255)
                  tATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGAt                                                                                                                                  <  2:4715826/150‑1 (MQ=255)
                   aTGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGAtt                                                                                                                                 <  1:2320696/150‑1 (MQ=255)
                   aTGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGAtt                                                                                                                                 <  2:3842724/150‑1 (MQ=255)
                   aTGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGAtt                                                                                                                                 >  2:2437967/1‑150 (MQ=255)
                    tGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTg                                                                                                                                >  2:2873328/1‑150 (MQ=255)
                     ggCCTTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGa                                                                                                                               >  2:2382438/1‑150 (MQ=255)
                     ggCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGa                                                                                                                               >  2:2382607/1‑150 (MQ=255)
                       cATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAg                                                                                                                             <  1:478835/150‑1 (MQ=255)
                        aTTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGa                                                                                                                            >  1:3660762/1‑150 (MQ=255)
                        aTTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGa                                                                                                                            >  1:4352407/1‑150 (MQ=255)
                         ttttGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGat                                                                                                                           <  2:2523240/150‑1 (MQ=255)
                         ttttGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGat                                                                                                                           <  2:877421/150‑1 (MQ=255)
                           ttGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGATAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGataa                                                                                                                         <  1:3175967/150‑1 (MQ=255)
                             gTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTCATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGataata                                                                                                                       >  2:3777466/1‑150 (MQ=255)
                                  gtgtCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATaaaaaa                                                                                                                  >  2:4561201/1‑150 (MQ=255)
                                  gtgtCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATaaaaaa                                                                                                                  <  1:1289675/150‑1 (MQ=255)
                                   tgtCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAg                                                                                                                 >  1:659791/1‑150 (MQ=255)
                                     tCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGAc                                                                                                               <  1:4522717/150‑1 (MQ=255)
                                       taaattaaatGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACtt                                                                                                             <  1:1388559/150‑1 (MQ=255)
                                        aaattaaatGACGCTGGTGTTAGCCGATCAGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTg                                                                                                            <  2:790641/150‑1 (MQ=255)
                                         aattaaatGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTgg                                                                                                           >  2:1150271/1‑150 (MQ=255)
                                            taaatGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTg                                                                                                        >  2:1032123/1‑150 (MQ=255)
                                              aatGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAATACTTGGCTGTa                                                                                                      >  1:3726800/1‑150 (MQ=255)
                                               atGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTaa                                                                                                     >  1:1107836/1‑150 (MQ=255)
                                                            tAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGtt                                                                                        <  2:4197671/150‑1 (MQ=255)
                                                            tAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGtt                                                                                        <  1:2383968/150‑1 (MQ=255)
                                                             aGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTg                                                                                       <  2:1503859/150‑1 (MQ=255)
                                                               ccGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGAc                                                                                     <  1:1829199/150‑1 (MQ=255)
                                                                cGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACa                                                                                    <  2:3830020/150‑1 (MQ=255)
                                                                 gATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACAt                                                                                   >  1:512467/1‑150 (MQ=255)
                                                                  aTCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATg                                                                                  >  1:3278087/1‑150 (MQ=255)
                                                                     ggCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATGCCGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGCCCATGGGTTGACATGTcc                                                                               <  2:3650881/150‑1 (MQ=255)
                                                                        gAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATc                                                                            <  1:1500588/150‑1 (MQ=255)
                                                                        gAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATc                                                                            >  1:2412757/1‑150 (MQ=255)
                                                                         aaaGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATca                                                                           >  1:4076491/1‑150 (MQ=255)
                                                                         aaaGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATca                                                                           >  2:2483057/1‑150 (MQ=255)
                                                                          aaGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATcaa                                                                          >  2:4305157/1‑150 (MQ=255)
                                                                          aaGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATcaa                                                                          >  2:4305576/1‑150 (MQ=255)
                                                                           aGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATcaac                                                                         <  1:3685604/150‑1 (MQ=255)
                                                                             ggCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATcaacaa                                                                       >  1:3383348/1‑150 (MQ=255)
                                                                               cTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAacaaca                                                                     >  2:1077086/1‑150 (MQ=255)
                                                                                tGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAg                                                                    <  1:1691977/150‑1 (MQ=255)
                                                                                  ggTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGAt                                                                  >  1:1188164/1‑150 (MQ=255)
                                                                                   gtcaTGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGAtt                                                                 <  1:3777466/147‑1 (MQ=255)
                                                                                    ttATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTg                                                                >  1:503351/1‑150 (MQ=255)
                                                                                        gAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCa                                                            <  2:44801/150‑1 (MQ=255)
                                                                                           aaaGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCagat                                                         <  1:3329631/150‑1 (MQ=255)
                                                                                              gagattagagattaCGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCagataga                                                      >  1:3132735/1‑150 (MQ=255)
                                                                                                     gagattaCGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTg                                               <  2:2807788/150‑1 (MQ=255)
                                                                                                       gattaCGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGAt                                             <  1:2739840/150‑1 (MQ=255)
                                                                                                       gattaCGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGAt                                             <  2:1520104/150‑1 (MQ=255)
                                                                                                       gattaCGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGAt                                             <  2:3942376/150‑1 (MQ=255)
                                                                                                          taCGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATtat                                          >  1:936762/1‑150 (MQ=255)
                                                                                                             gggTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATAtt                                       >  2:2984164/1‑150 (MQ=255)
                                                                                                              ggTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTa                                      >  2:1467959/1‑150 (MQ=255)
                                                                                                                ttAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAAt                                    <  1:3690712/150‑1 (MQ=255)
                                                                                                                     tCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCaga                               <  2:799549/150‑1 (MQ=255)
                                                                                                                      cTGTTCGGTATGTACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCagag                              >  1:4581748/1‑150 (MQ=255)
                                                                                                                          tCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATa                          >  1:1937771/1‑150 (MQ=255)
                                                                                                                           cGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATaa                         >  2:3538280/1‑150 (MQ=255)
                                                                                                                           cGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATaa                         >  2:2266690/1‑150 (MQ=255)
                                                                                                                            ggTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATaaa                        <  1:2454870/150‑1 (MQ=255)
                                                                                                                            ggTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATaaa                        >  2:4514266/1‑150 (MQ=255)
                                                                                                                             gTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATaaaa                       >  1:1001221/1‑150 (MQ=255)
                                                                                                                              tATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATaaaaa                      <  2:2278875/150‑1 (MQ=255)
                                                                                                                                 gTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAAc                   <  2:463069/150‑1 (MQ=255)
                                                                                                                                  tACGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACg                  >  1:2796638/1‑150 (MQ=255)
                                                                                                                                   aCGTCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAATTGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACGa                 <  2:1850259/150‑1 (MQ=255)
                                                                                                                                   aCGGCAGAAAAGTAAAACTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACGa                 >  2:1372174/1‑150 (MQ=255)
                                                                                                                                     ggCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACGATa               <  2:265580/150‑1 (MQ=255)
                                                                                                                                                 aaGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACaa   <  1:2316358/150‑1 (MQ=255)
                                                                                                                                                  aGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAg  >  2:339217/1‑150 (MQ=255)
                                                                                                                                                  aGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAg  >  2:1301461/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TGATCAATTTTTCCATTGTATGGCATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCCCATTCTGAAATGATTGAAGATAATAAAAAAGACTTGGCTGTAAATGACCATGGGTTGACATGTCCATCAACAACAGATTGCTCAGATAGATGTAGTGATTATATTAATCCAGAGCATAAAAAAACGATAAAGGCTTTACAAG  >  CP009273/523800‑524095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: