| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,454,118 | A→T | 7.0% | I270F (ATT→TTT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,454,118 | 0 | A | T | 7.0% | 918.5 / 4.3 | 314 | I270F (ATT→TTT) | paaH | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (102/180); new base T (15/6); total (128/186) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.04e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 316 total aligned reads displayed.
CGATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACGAT > CP009273/1453973‑1454267 | tGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACATAGCTGGTGCAAAACGCACGGGTGTTtggt‑gg > 2:179281/1‑150 (MQ=255) ggCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGa < 1:4545315/150‑1 (MQ=255) gcgcTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGAc < 2:2087394/150‑1 (MQ=255) gcTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTAGCTGGTGCAACAGGAACAGGTGATTGGT‑GGACgg > 2:2909392/1‑150 (MQ=255) tGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTTACATCGCGGGTGCAACAGGAACAGGGGATTGGT‑GGACGGtt > 1:1887930/1‑150 (MQ=255) tGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGtt < 1:974604/150‑1 (MQ=255) tGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGtt < 1:3998475/150‑1 (MQ=255) ggTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTg < 2:674561/150‑1 (MQ=255) tttCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTggg < 2:2309072/150‑1 (MQ=255) tCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTACCTTCGCTGGTGCAACCGGAACTGGTGATTGGG‑GGACGGTTGGGCa > 2:1862846/1‑150 (MQ=255) cGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTAACATAGCATGTGCAACACGAACGGGTGTGTTGG‑GGACGGGTGGGGAAGa > 2:3263747/1‑150 (MQ=255) gATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGaa > 2:2780906/1‑150 (MQ=255) cGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTCGCTGGTGCAACAGGAAAGGGTGATTGGG‑GGTCGGTTGGGCAAGAAACGtgggc > 2:3246646/1‑150 (MQ=255) tGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCACGAAAATtgggctgg > 2:2557329/1‑150 (MQ=255) tGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGtgggctgg < 2:1092129/150‑1 (MQ=255) gAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGtgggctgggc < 1:3076442/150‑1 (MQ=255) aTTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTTAATTAGCTGGTGCAAAACGAAAAGGTGGTTGGT‑GGACGGTTTGGGAAAAAAATATGGCTTGGCgt > 1:1655595/1‑150 (MQ=255) aTTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTTAAATAGCGGGTGGAACAGGAACAGGTGATTGGT‑TGTCGGTTGGGGAAAAAAACTGTGCTGGGCgt > 1:1343240/1‑150 (MQ=255) aTTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAAAATAGCAGGGGCGACACGAAAAGGGGTATTGT‑GGTCGGGTGGGGACCAAAAGTTGGCTGGGCgg > 1:4442712/1‑149 (MQ=255) aaCCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCACGAAAAGTGGGCTGGGCGTGTa > 1:2495774/1‑150 (MQ=255) aaCCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTa < 2:349089/150‑1 (MQ=255) aaCCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTa < 1:623001/150‑1 (MQ=255) aCCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTAGCTGGTTCAACAGGAACTGGTGTTTGGT‑GGACGGTTTGGGAAGAAAATTGGGCTGGGCGGGTAc > 1:3007844/1‑150 (MQ=255) gATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGAc > 2:3983949/1‑150 (MQ=255) aTCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACt < 2:135139/150‑1 (MQ=255) aTCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACt < 2:3096260/150‑1 (MQ=255) tCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTACCTTCGCTGGTGCAAAAGGAAAGTGGGATTTGT‑GGTCGGTTTGGCAAGAAAAATTGGCTTGGCGTGTACGACTg > 2:1216940/1‑150 (MQ=255) ttGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTAACTTATCTGGTGCAACACGAAAAGGGGTTTTGG‑GGTCGGGTGGGGACGAAAAATGGGCTGGGCGTGGACGACAGgcgcg > 1:4430886/1‑150 (MQ=255) tGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAACTTAGCAGGTGCAACAGGAACTGGTGTTTGGT‑GGACGGTTGGGCAAGAAAAGTTGGCTGGGCGGGTAAGACTGgcgcgc > 2:539668/1‑150 (MQ=255) tGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTAACATAGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTTGGCTGGGCGGGTACGACTGgcgcgc > 1:396233/1‑150 (MQ=255) ggTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTAAAATAGCTGGTGCAAAAGGAACAGGTGATTTGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGcgcgcg > 1:3434542/1‑150 (MQ=255) gTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCgg < 2:4649045/150‑1 (MQ=255) cAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGaa < 1:4727153/150‑1 (MQ=255) cAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGaa < 2:628404/150‑1 (MQ=255) tgACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTAACATAGCGGGTGCAACAGGAACTGGGGATTGGT‑GGTCGGTTGGGCCAGAAAAGTTGGCTGGGCGGGTACGACATGCGCGCCGAAcc > 1:276572/2‑149 (MQ=255) gACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGt < 2:2422558/150‑1 (MQ=255) aCGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTg < 2:1018638/150‑1 (MQ=255) gTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTAACATAGCAGGTGGAACAAGAAAGGGGGTTTTGTGGGCCGGTTGGG‑AAGAAAAGTGGGGGGGGGGGGTTCGACGGGCGCGCGGAACCTggg > 1:1243179/1‑148 (MQ=255) tCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAgg < 1:2555352/150‑1 (MQ=255) tCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCATCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAgg > 2:4282799/1‑150 (MQ=255) aaTTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCa < 1:3263747/150‑1 (MQ=255) aTTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAg < 2:2029132/150‑1 (MQ=255) aTTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAg > 2:3185706/1‑150 (MQ=255) tttGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAgtt < 2:2881761/150‑1 (MQ=255) tttGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAgtt < 2:1992816/150‑1 (MQ=255) cTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGttgttg < 1:3860659/150‑1 (MQ=255) tCACCTGTTCGGTGTTTAACGCTGTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGcc < 2:812593/150‑1 (MQ=255) aCCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTg < 1:2218579/150‑1 (MQ=255) cTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGGAACAGGAACTGGTGATTGGG‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACGGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGa > 2:3005859/1‑150 (MQ=255) cTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGa < 1:3542223/150‑1 (MQ=255) cTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCATCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGa > 2:3101898/1‑150 (MQ=255) cTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTAACTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCCAGAAAATTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCCGTTGTTGGCCTGGa > 2:1723246/1‑150 (MQ=255) ttCGGTGTTTAACGCTTTCTGGCAGGATCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGc < 1:106381/150‑1 (MQ=255) cGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCgg < 2:3742224/150‑1 (MQ=255) ggTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGt < 2:4149128/150‑1 (MQ=255) ggTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCATCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCCAGAAAAGTGGGCTGGGCGGGTACGACAGGCGCGCGGAACGTGTGGCCGTTGTTGGCCTGGAAGCGGt > 2:2211763/1‑150 (MQ=255) gtgtTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTa < 2:1757813/150‑1 (MQ=255) gtgtTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTa > 2:4317935/1‑150 (MQ=255) tgtTTAACGCTTTCTGGCAGGAGCGTCGTGTTTTTCCTTCGCTGGTGGAACAGGTACGGGTGGTTGGT‑GGGAGGTTGGGGAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGGACGTGAGGCAGTTGTTTGCCGGGAAGCGGTaa > 2:1242770/1‑150 (MQ=255) gtTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAg < 2:3414413/150‑1 (MQ=255) gtTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAg < 1:924933/150‑1 (MQ=255) ttAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCg < 1:3935811/150‑1 (MQ=255) aaCGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGAc < 1:1823899/150‑1 (MQ=255) aCGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACa < 2:3595562/150‑1 (MQ=255) tttCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGttt < 2:1545293/150‑1 (MQ=255) tCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTa < 1:153445/150‑1 (MQ=255) tCTGGCAGGAGCGTCGTTTTTTACCTGCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTa < 2:94317/150‑1 (MQ=255) cTGGCAGGAGCGTCGTTTTTTAACTTCGCGGGTGCAACAGGCACTGGTGATTGGT‑GGACGGTTGGGCCAGAAAAGTGGGCTTGGCGTGTACGACTGGCGCGCCGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAg > 2:4226553/1‑150 (MQ=255) gAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATg < 1:4653378/150‑1 (MQ=255) gAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATg < 1:3857180/150‑1 (MQ=255) cgtcgtTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGaaa < 1:1190612/150‑1 (MQ=255) tcgtTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAgg > 2:1482375/1‑149 (MQ=255) cgtTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTa < 1:1940890/150‑1 (MQ=255) gtTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTag < 1:4274434/150‑1 (MQ=255) ttttttACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTaga < 2:1441469/150‑1 (MQ=255) ttACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaaaag > 2:2177532/1‑150 (MQ=255) aCCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaaaagaa < 2:1968722/150‑1 (MQ=255) ccTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTagaaaagaaa > 2:3965526/1‑150 (MQ=255) cTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAgaaaagaaaa < 2:1402132/150‑1 (MQ=255) tCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGt < 2:4437868/150‑1 (MQ=255) cTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGAc > 2:4788964/1‑150 (MQ=255) tGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACg > 2:4676105/1‑150 (MQ=255) tGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACg > 2:4386862/1‑150 (MQ=255) tGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACg > 1:3725262/1‑150 (MQ=255) tGGTGCAACAGGAACTGGTGATTGGT‑GGACGGCTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGTGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACg < 1:2373577/150‑1 (MQ=255) ggTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACgg < 1:3304810/150‑1 (MQ=255) gTGCAACTGGAAGTGGTGTTGGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAG‑TTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGgtg < 2:4691893/150‑1 (MQ=255) tGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGgtg < 1:735600/150‑1 (MQ=255) cAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTc > 2:2524387/1‑150 (MQ=255) aCAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCAc > 1:1641408/1‑150 (MQ=255) cTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAAtt < 1:179281/150‑1 (MQ=255) tGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTg > 1:107187/1‑150 (MQ=255) tGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTg < 1:4174463/150‑1 (MQ=255) gTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAACGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGAc < 1:920493/150‑1 (MQ=255) tGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACg > 2:4393860/1‑150 (MQ=255) tGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACg > 1:2350421/1‑150 (MQ=255) tGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACg < 2:1680676/150‑1 (MQ=255) tGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACg > 1:1500649/1‑150 (MQ=255) ngATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGGAGAAAAGAAAAGTGACGGTGTCACGGAAAGTGACg > 2:1961700/2‑150 (MQ=255) gATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACGa > 1:2453665/1‑150 (MQ=255) | CGATGGCGCTGGTTTCCCGATGGGGCCGCTGGAATTAACCGATCTGATTGGTCAGGACGTCAATTTTGCTGTCACCTGTTCGGTGTTTAACGCTTTCTGGCAGGAGCGTCGTTTTTTACCTTCGCTGGTGCAACAGGAACTGGTGATTGGT‑GGACGGTTGGGCAAGAAAAGTGGGCTGGGCGTGTACGACTGGCGCGCGGAACGTGAGGCAGTTGTTGGCCTGGAAGCGGTAAGCGACAGTTTTAGCCCAATGAAAGTAGAAAAGAAAAGTGACGGTGTCACGGAAATTGACGAT > CP009273/1453973‑1454267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |