| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,673,380 | T→A | 5.4% | S233T (TCA→ACA) ‡ | ydgH → | DUF1471 family periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,673,380 | 0 | T | A | 5.4% | 731.0 / 3.6 | 264 | S233T (TCA→ACA) ‡ | ydgH | DUF1471 family periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base T (110/135); new base A (6/13); total (116/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 284 total aligned reads displayed.
AGAGCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTGC > CP009273/1673231‑1673528 | agagCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcat > 1:4385688/1‑150 (MQ=255) agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcctca > 2:680030/1‑150 (MQ=255) agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcatca < 2:894549/150‑1 (MQ=255) agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcatca < 1:3185481/150‑1 (MQ=255) agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcatca > 2:3067343/1‑150 (MQ=255) gCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCaa < 2:4591174/150‑1 (MQ=255) cGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAg < 1:859685/150‑1 (MQ=255) cGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAg < 1:1649975/150‑1 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGTAACCCAGTCATCCAAAgg > 2:2811228/1‑150 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAgg < 1:3374740/150‑1 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAgg < 1:2869504/150‑1 (MQ=255) gATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggc < 2:629145/150‑1 (MQ=255) tgtgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgg < 1:621646/150‑1 (MQ=255) tgtgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgg < 1:3930867/150‑1 (MQ=255) gtgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcggg < 1:4477778/150‑1 (MQ=255) tCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGTCTGCAGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGtt > 2:1566584/1‑150 (MQ=255) tCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGtt < 1:3941156/150‑1 (MQ=255) tCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGTCATCAAAAGGCGGGCGtt > 2:1024711/1‑150 (MQ=255) cccGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTa < 1:2173178/150‑1 (MQ=255) cGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAAAACACTCCTCAAAAAGCGGGCGTTaaa > 1:1763264/1‑148 (MQ=255) cAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCg > 1:672109/1‑150 (MQ=255) aGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGt > 2:2594627/1‑150 (MQ=255) aTTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCa < 2:1716045/150‑1 (MQ=255) aTTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGTAATAAAAATGCGGGCGTTACACCGTCa > 1:915597/1‑150 (MQ=255) cGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCt > 2:2678883/1‑150 (MQ=255) cGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCt > 2:3431005/1‑150 (MQ=255) gAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCAACAAAATGCGGGCGTTAAACCGTCACGCTc > 1:3874419/1‑150 (MQ=255) aaGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGTTcc < 1:1660292/150‑1 (MQ=255) aaGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGTTcc < 1:2765527/150‑1 (MQ=255) aaGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCACGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTcc > 2:2929918/1‑150 (MQ=255) aGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTccc > 2:256447/1‑150 (MQ=255) cAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCgg > 1:1103124/1‑150 (MQ=255) aGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGCAACCCAGTCCTCAAAATGCGGGCGTTACACCGTCACGCTCCCGGa > 1:3742787/1‑150 (MQ=255) ggACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGAt < 2:2067436/150‑1 (MQ=255) ggACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGTCATCAAAAGGCGGGCGGTACACCGTCACGCTCCCggct > 2:1257015/1‑148 (MQ=255) aCGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATgg < 2:4466681/150‑1 (MQ=255) gTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCACTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGcc > 1:2576636/1‑149 (MQ=255) tGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCAc > 1:771587/1‑150 (MQ=255) cAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTa > 2:1683731/1‑150 (MQ=255) gCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTaaa < 2:3625163/150‑1 (MQ=255) gCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTaaa < 2:4230001/150‑1 (MQ=255) ctctGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAg < 1:2506954/150‑1 (MQ=255) ctctGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAg < 1:2066192/150‑1 (MQ=255) cTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCgaag > 2:1959654/1‑150 (MQ=255) gCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCgaagaa < 2:2267030/150‑1 (MQ=255) gCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCgaagaa < 1:1387099/150‑1 (MQ=255) cGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACt > 2:1891124/1‑150 (MQ=255) cGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACt > 2:770633/1‑150 (MQ=255) ggTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTg < 1:4776969/150‑1 (MQ=255) ggTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTATTTGAAACCCAGTCATCAAAATGCGGGCGTTAAACCGTAACGCTCCCGGATGGCAATAAAATAgaagaaatt > 1:1047512/1‑147 (MQ=255) tGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGaa < 1:542114/150‑1 (MQ=255) gCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACa < 2:4262532/150‑1 (MQ=255) cGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACaa < 2:2711313/150‑1 (MQ=255) gAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACaaa < 1:925414/150‑1 (MQ=255) aaGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAg < 2:1101254/150‑1 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCCCGAAAGTCGAAGAACTGAACAAAGc > 2:4353390/1‑150 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGc < 1:345934/150‑1 (MQ=255) gCCGCGAAGTAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGTACAAAGCg < 1:3826547/150‑1 (MQ=255) ccGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTGTTTTTAAACCACACAAAAAAAGGCGGGCGTTACACCGGCACCCACCCGGCAGGCACGAAAGTCGAAGAAAAGaaaaaaacca > 1:3601648/1‑146 (MQ=255) cgAATAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACAAAGTTCTGAAGTCGGTCGCTACTTTGAAACCCAGTCAAAAAATGGCGGGCGTTACACCGTCACGATCCCGGATGGCAATAAAGTCTAATAACTGAACAAAGCGACCg < 2:3872081/150‑1 (MQ=255) gaaAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAAACCAGTCATAAAAAATCGGGCGGTAAAACCAAACGCTCCCCGATGGCACTAAACTAGAACAAATGAACAAATCCACCGCaac > 1:3812130/1‑148 (MQ=255) aaGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACAGAACAAAGCGACCGCAGCga > 1:1432188/1‑150 (MQ=255) agaTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATgg > 2:4618057/1‑150 (MQ=255) aTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAAACCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAATTCGAAGAACTGAACAAATCGAACGCAGCGATGATGGTc > 1:1431218/1‑150 (MQ=255) tCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTcc > 2:3800704/1‑150 (MQ=255) cGGGTGTTGCGACTCCCGCATCCCCAAGTTCTGATGTCGGGCGGTTCTTTCAACCCCCGTCATCAAACGGCGGGGGTTCCCCGGACACGCTCCCGGATGCCACTAAAGGCTACGAACTCAACAACGCGACCGCAGCGATGATGGTCCCGt < 2:2846540/150‑1 (MQ=255) gggTGTTGCGACTACCGCATCACCATTTTCTGATGTCGGTCGCTTCTTTTAAACCCAGACAAAAAAAGGCGGGCGTAACACCGTCACGCACCCGGAGGGAACTAAAGTCCACCAACTGAACAACGCGACCGCAGCGATGATGGTCCCGtt < 1:765670/150‑1 (MQ=255) gggTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGtt > 2:792050/1‑150 (MQ=255) ggTGTTGCTAATACCGAATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCGGGATGGAACTAAATTCTAAGAAATTAACAAAGCGACCGCAGCGATGATGGTCCCGTTc < 2:919874/150‑1 (MQ=255) gtgtGGCGACTACCGAATCACCATTTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGACATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCTAACAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCg < 2:2373582/150‑1 (MQ=255) gtggCGACTCCCGATTCACCAAGTTCGGATGGGGGTCGGTTCTTTGAACCCCCGTCATCAAAGGGCGGGCGTTACCCGGTCCCGCGCCGGGCGGGCACTAACGTCGACGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGAc < 2:3278528/147‑1 (MQ=255) tGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACAGAACAAAGCGGCCGCAGCGCTGATGGGCCCGTGCGACAg > 1:4343846/1‑150 (MQ=255) ggctaCTACCGCAAAACCATGTTCTGAAGTCGGTCGATTCTTTGAAACCCAGTAAAAAAATGGGGGGCGTTACACCGTAACGCTCCCGGATGGCACTAACGTCGAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAg < 1:2346489/146‑1 (MQ=255) cGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGGTACACCGTCCCGCTCCCGGATGGCACAAAAGTCGAAGAACAGAACAAAGCGACCCCAGCGATGATGGTCCCGGTCGACAGcc > 1:3465070/1‑149 (MQ=255) gACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCCGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCCTTCGACAGCAt > 1:3092827/1‑150 (MQ=255) aCCGAAACACAATGTTCTGATGTGGGTCGATTCTTTGAAACCCAGACATAAAACGGCGGGCTTAACACCGTCCCGCTCCCGGTTGCCAATAAAGACCACGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCaaa < 1:1482839/150‑1 (MQ=255) ccGAATCACCATGTTCTTATGTGGGTCGCTTATTTTAAACCCAGTCATCAAATGGGGGGCTTTACACCTTCACGCTCCCGTTTGGCAATAACGTCGAATAACTTAAAAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAAt < 1:4385087/150‑1 (MQ=255) ccGAATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACGGCATCAAAt < 2:1799077/150‑1 (MQ=255) gCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAATGGCGGGCTTTACACCGTCACGCTCCCGGATGGCACAAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATtc < 2:4385688/150‑1 (MQ=255) aTCACCAAGTTCTGAAGTCGGTCGATTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCCCTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATtctc < 2:1134154/150‑1 (MQ=255) ccATGTTCTGATGTGGGTCGCTTATTTGAAACCCTGAAATAAAATGGGGGGCTTTACACCGTCACGCTCCCGGTGGGCAATAAAGTCGAATAACTCAAAAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGc < 1:4236025/150‑1 (MQ=255) gtgggtctCTTATTTTAAACCCATACATAAACTGGGGGGCTTAACACCGACAGGCTCCGGTTTGTCACTAAACTCCACAAAATCAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAAc < 1:2548514/147‑1 (MQ=255) gtgggtcgATTATTTTAAACCCAGTCATCAAACGGCGGGCGTTACACCGTCACGCTCCCGGAGGGCAATAAAGTCGAAGAACTTAAAAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAAc < 1:1777657/147‑1 (MQ=255) gtcggtcgCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAATGTCGAATAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAAc < 2:4773712/150‑1 (MQ=255) tcggtcgCTTATTTGAAACCCCGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGACTAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACa < 2:3977478/150‑1 (MQ=255) gggtcgTTTTTTTCAACCCCCGACATCAATGGGGGGGGTTTCCACCGACCGGCTCCGGGTGGGAAAAAAAGGCCACTAACTCAACACCGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACAt < 1:4046025/149‑1 (MQ=255) cggtcgATTCTTTTAAACCCAGTAATAAAAGGGGGGGGGTTACCCCGTCACGCTCCCGGATGGCACTAAAGTCGACGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACAt < 1:244052/150‑1 (MQ=255) ttcgTTTATTTTAAACCCAGACATAAAATGGCGGGCTTTACCCCTTCAGTATCCGGTATGGAAATAAAGTCTAACAACTTAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGa < 2:1433174/149‑1 (MQ=255) gtcgTTTCTTTAAAACCCAGACATAAAATGGCGGGGGTTACACCGGCACGCTCCCGGATGCCACTAAAGTCGAATAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGa < 1:4183681/150‑1 (MQ=255) cgCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAcc > 2:554786/1‑150 (MQ=255) cgCTTCTTTGAAACCCAGTCATAAAATGGGGGGCGTTACACCGTCACGCTCCGGGATGGCAATAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAcc < 2:1076905/150‑1 (MQ=255) tcttTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATTGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAg > 2:2455427/1‑150 (MQ=255) cttTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGt > 1:1306914/1‑150 (MQ=255) ttGAAACCCATTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAACGAAGtct > 2:3149104/1‑150 (MQ=255) tGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtctc > 1:2050565/1‑150 (MQ=255) aaCCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTa > 1:1010854/1‑150 (MQ=255) aCCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTAt > 1:3649863/1‑150 (MQ=255) aGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAgg > 2:3309073/1‑150 (MQ=255) tcatcaAAAGGCGGGCTTTACCCGGTCACGCTCCCGGATGGCACTAACGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGtt < 2:4097877/150‑1 (MQ=255) tcatcaAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGtt > 1:3283110/1‑150 (MQ=255) | AGAGCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTGC > CP009273/1673231‑1673528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |