| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,673,381 | C→A | 7.7% | S233* (TCA→TAA) ‡ | ydgH → | DUF1471 family periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,673,381 | 0 | C | A | 7.7% | 782.8 / 2.4 | 264 | S233* (TCA→TAA) ‡ | ydgH | DUF1471 family periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base C (106/124); new base A (10/24); total (116/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.47e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 280 total aligned reads displayed.
GAGCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTGCGA > CP009273/1673232‑1673530 | agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcctca > 2:680030/1‑150 (MQ=255) agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcatca < 2:894549/150‑1 (MQ=255) agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcatca < 1:4411341/150‑1 (MQ=255) gCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCaa < 2:4591174/150‑1 (MQ=255) cGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAg > 1:370695/1‑150 (MQ=255) cGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAg < 1:1649975/150‑1 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAgg > 2:2811488/1‑150 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAgg < 1:2869430/150‑1 (MQ=255) gATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggc < 2:629145/150‑1 (MQ=255) tgtgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgg < 1:621646/150‑1 (MQ=255) gtgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcggg < 1:881132/150‑1 (MQ=255) tgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgggc > 2:2673836/1‑150 (MQ=255) tgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgggc > 2:4322338/1‑150 (MQ=255) gATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgggcg < 1:3783742/150‑1 (MQ=255) aTCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTATTTGAAACCCACTCATCAAAAGGCGGGCGt > 1:4097877/1‑150 (MQ=255) tCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGtt < 1:3144139/150‑1 (MQ=255) cccGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTa < 1:2172100/150‑1 (MQ=255) cGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAAAACACTCCTCAAAAAGCGGGCGTTaaa > 1:1763264/1‑148 (MQ=255) cGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTaca < 2:3065248/150‑1 (MQ=255) ggCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTacac < 2:709223/150‑1 (MQ=255) cAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCg > 1:671669/1‑150 (MQ=255) aTTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAAACCAGTCATCAAAAGGCGGGCGTTACACCGTCa > 1:915691/1‑150 (MQ=255) aTTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCa < 2:1714357/150‑1 (MQ=255) tCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGTAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACg < 2:1947237/150‑1 (MQ=255) tCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACg < 1:2471094/150‑1 (MQ=255) tCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACg < 2:1084049/150‑1 (MQ=255) gAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTc > 1:3874412/1‑150 (MQ=255) aaGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGTTcc < 1:2765527/150‑1 (MQ=255) aaGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGTTcc < 1:1660292/150‑1 (MQ=255) aaGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTcc < 1:1769709/150‑1 (MQ=255) aGCAGGACGTGCAGCTCTGGCTGCCTGTGGCGAAGCCGCTAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTcca < 1:4187829/150‑2 (MQ=255) aGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCACTCATCAAAAGGCGGGCGTTACACCGTCACGCTccc > 2:2002570/1‑150 (MQ=255) gCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCg > 2:2487891/1‑150 (MQ=255) cAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCgg > 1:1103124/1‑150 (MQ=255) ggACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGAt < 2:1011394/150‑1 (MQ=255) aCGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATgg < 2:4466681/150‑1 (MQ=255) gTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCACTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGcc > 1:2576636/1‑149 (MQ=255) tGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCAc < 1:3979937/150‑1 (MQ=255) aGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTaa > 2:4738501/1‑150 (MQ=255) gCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTaaa < 2:4230001/150‑1 (MQ=255) ctctGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAg < 1:2065684/150‑1 (MQ=255) tctGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGt < 1:2249060/150‑1 (MQ=255) cTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCgaag > 2:552830/1‑150 (MQ=255) gCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCgaagaa < 1:1387099/150‑1 (MQ=255) cGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACt < 2:3420057/150‑1 (MQ=255) cGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACt < 2:3817427/150‑1 (MQ=255) cGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTATTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACt > 2:2901479/1‑150 (MQ=255) ggTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTg < 1:4776959/150‑1 (MQ=255) ggTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTATTTGAAACCCAGTCATCAAAATGCGGGCGTTAAACCGTAACGCTCCCGGATGGCAATAAAATAgaagaaatt > 1:1047512/1‑147 (MQ=255) tGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGaa < 1:542114/150‑1 (MQ=255) gCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACa < 2:4262442/150‑1 (MQ=255) cGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACaa < 2:2807294/150‑1 (MQ=255) aaGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAg < 2:2093866/150‑1 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGc < 1:345928/150‑1 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGc < 2:165633/150‑1 (MQ=255) gCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCg < 2:2690308/150‑1 (MQ=255) gCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCg < 1:3373159/150‑1 (MQ=255) cgcgAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGAc < 2:3296832/150‑1 (MQ=255) gaagaaAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGc > 2:2575912/1‑150 (MQ=255) agaTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATgg > 2:4617932/1‑150 (MQ=255) aTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTGTTTGAAAACCAGTCATCAAAAGGCGGGCGTTAAAACGTCAACCTCCCGGATGGCACTAAAGTCGAAGAACTGAAAAAAGCGACCGCAGCGATGATGGTc > 1:3461898/1‑150 (MQ=255) aTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAAACCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAATTCGAAGAACTGAACAAATCGAACGCAGCGATGATGGTc > 1:1431218/1‑150 (MQ=255) aTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGGTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCCCAGCGATGATGGTc > 1:1431297/1‑150 (MQ=255) ccggggTGTTGCTACTCCCGAATCACCAAGTTCTGATGTCGGTCGTTTATTTGAAACCCAGACATCAAAAGGCGGGCGTTACACCGTCACGCTCCGGGATGGCAATAACGTCGACTAACTGAACAACGCGACCGCAGCGATGATGGTccc < 1:2369538/147‑1 (MQ=255) ccGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAACCCACTCATCAAAAGGCGGGCGTTACACCCTCACGCTCCCCGATGGCACAAAAGTCGAAGAACAGAACAAAGCGACCGCAGCGATGATGGTCCCg > 1:3920401/1‑150 (MQ=255) ccGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCGGCGATGATGGTCCCg > 2:2384943/1‑150 (MQ=255) gggTGTTGCGACTACCGCATCACCAAGTTCTGATGTCGGTGGATTCTTTCAAACCCGGTCATCAAACGGCGGGCGTTACCCCGTCCCGCTCCCGTTTGGCAATAAAGTCTAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGtt < 1:4303512/150‑1 (MQ=255) gggTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGtt > 2:791871/1‑150 (MQ=255) ggTGTTGCTAATACCGAATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCGGGATGGAACTAAATTCTAAGAAATTAACAAAGCGACCGCAGCGATGATGGTCCCGTTc < 2:919874/150‑1 (MQ=255) tgtTGCGACTACCGCATAACCAATTTCTGATGTGGGTCGCTTCTTTTAAACCCAGACATAAAACGGCGGGCTTTACACCGTCACGCTCCGGGTTGGCACTAAAGTCCAAGAACTGAAAAAAGCGACCGCAGCGATGATGGTCCCGTTCGa < 1:3551935/150‑1 (MQ=255) tGCTACTACCGCATAACAATGTTCTGAAGTGGGTCGCTTCTTTTAACCCCAGTCAACAAACGGGGGGGGTAACCCCGCCCCGCTCCCGTTTGGAACTAACGGCGAATAAATCACAAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAg < 2:3687912/150‑1 (MQ=255) tGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAATGCGGGCGTTACACCGTCACGCTCCCGGATGGCACAAAAGTCGAATAACAGAACAAAGCGACCGCAGCGATGATGGTACCGTTCGACAg > 1:4349050/1‑150 (MQ=255) cGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTGTTTTTAAAACCGTCAACAAAACGCGGGGGTTAAACCCTCACCCGCCCGGCGGGCACAAAAATAGAAGAAAAGAAAAAAACGACCCCACCCAAGATGGTCCCCGTCGACACCa > 1:3617693/1‑150 (MQ=255) taCTACCGCATCACCATGTTCTGAAGTCGGTCGCTTCTTTTAAACCCAGTCATAAAATGGCGGGCGTTACACCGACACGCTCCCGGATGGCACTAAAGTCGAATAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCAt < 2:1045562/149‑1 (MQ=255) cTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCCTCAAAAGGCGGGCGTTACACCGTCACGCTCCCCGCTGGCACTAAAGTCGAAGAACTTAACAAAGCGACCCCCGCGAAGATGGTCCCGGTCGACACCATCa > 2:3248613/1‑150 (MQ=255) cTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCa > 2:1353365/1‑150 (MQ=255) aCCGAAACACAATGTTCTGATGTGGGTCGATTCTTTGAAACCCAGACATAAAACGGCGGGCTTAACACCGTCCCGCTCCCGGTTGCCAATAAAGACCACGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCaaa < 1:1482839/150‑1 (MQ=255) ccGAATCACCAAGTTCTGATGTGGGTCGCTTATTTTAACCCCAGACATCAAACGGCGGGCGTTACACCGTCACGCTCCCGTATGGCAATAAAGTCGAAGAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAAt < 1:4385088/150‑1 (MQ=255) gCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAATGGCGGGCTTTACACCGTCACGCTCCCGGATGGCACAAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATtc < 2:4385688/150‑1 (MQ=255) aacaccacGTTGTGATGTCGGGCGATTCTTTTAAACCCCCTAAAAAACTGGGGGGGTTTCCCCCGTCACGCCCCGGTTTGGCAATACCGTCGAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATtctc < 2:1198912/148‑1 (MQ=255) aTCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAAACCAGTCAACAAAAGGCGGGCGTTACACCGGCACCCACCCGGATGGCACTAAAGTCGAAGAACAGAACAAATCGACCGCAGCGATGATGGTCCCGGTCGCCCGCATCAAAAtctc > 1:716521/1‑150 (MQ=255) aTCACCAAGTTCTGAAGGCGGTCGCTTCTTTGAAACCCAGGCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATtctc < 2:3540650/150‑1 (MQ=255) aTCACAATGTTCTTATGTCGGTCGCTTCTTTGAAACCCAGTCATCAAATGGCGGGCGTTACACCGTCACGCTCCCGGTTGGAACTAACGTCGAAGAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATtctc < 2:1132492/150‑1 (MQ=255) cACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCAACAAAAGGCGGGCGGTACACCCGCCCGCGCCCGGCTGGCACTAAAGTCGAATAACAGAACAAACCGACCCCCGCCATGATTGTCCCCGTCGACAGCCTCAAAATCACTg > 1:3821488/1‑150 (MQ=255) aattttCTGATGTCGGTCGTTTCTTTGAAACCCAGTCATCAAATGGCGGGCGTTACACCGTCACGCTCCGGGATGGCACTAACGTCTAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCa < 1:768620/146‑1 (MQ=255) gTTCTGAAGTCGGTCGATTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGTATGGCAATAAAGTCGACTAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACt < 1:1959654/150‑1 (MQ=255) tcggtcgCTTATTTGAAACCCCGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGACTAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACa < 2:3977478/150‑1 (MQ=255) gtcgCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCTAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGa < 2:1836889/150‑1 (MQ=255) cgattttttAAACCCCTGTCATAAAATGGGGGGGTTCACACCGTCACGCCCCCGTTTGCCACTAAAGTCTAACAACTCAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAcc < 1:82699/144‑1 (MQ=255) cttTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGt > 1:1306914/1‑150 (MQ=255) ttttAAACCCCGTCATAAACGGGGGGGCTTTACACGGTCACGCGCCCGGTTGCAACTAATGTCCAACAACTCAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtc < 1:3278883/150‑1 (MQ=255) ttGAAACCCAGACAACAAATGGCGGGCGTAACACCGTCCCGCGCCCGGATGGCACTAAAGCCGACTAACTCAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtct < 1:3938109/150‑1 (MQ=255) tGAAACCCAGTCAACAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCAATAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtctc < 2:2367306/150‑1 (MQ=255) aaaCCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCt > 2:1500306/1‑150 (MQ=255) aaCCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTa > 1:1010854/1‑150 (MQ=255) cccAGTAATAAAATGGCGGGGTTTACACCGTCACGCTCCGGGTTGGAAATAATGTCGAAGAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATc < 1:3067343/150‑1 (MQ=255) tcatcaAAAGGCGGGCTTTACCCGGTCACGCTCCCGGATGGCACTAACGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGtt < 2:4097877/150‑1 (MQ=255) catcaAAAGGCGGGCGTTACACCGTCACGCTCCCGGAAGGCACTAAAGTCGAAGAACAGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATACTCTGCCAACTACGGCAACATGACCGAAGTCTCCTAACAGGTTg > 1:2538481/1‑150 (MQ=255) atcaAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTGc > 2:1740066/1‑150 (MQ=255) atcaAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTGc > 2:3078930/1‑150 (MQ=255) | GAGCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTGCGA > CP009273/1673232‑1673530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |